Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007797.1

Orthogroup ID

OG0007879

Physical Location & Seq

Genomic Coordinates Reverse (-)

595 .. 3793

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007797.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgaagcactgtcgagttgatacttctcatgcattaaattcttccccatggtttaggtttccttatccgttacaatggggtactcctgttttccactggaaaatggctattgttatgtgtgtggtttcaattatctcatcagtggattcggttggctcatatcatgcttcttcactattggtggcatccaggcctccaactcctggtgttgttagtcgagggataggtcttgaaggtctttccagcatcttggcgggtttatggggtactggaacagggtccacaagtttaactgaaaatgtgcacacaatagctgtcactaagatgggaagccgtagagcagttgaattgggtgcatgcctcttgattgtcttatcccttgttggtaaagttggagggtttcttgcatcaattccccaagtcatggttgcagcacttctgtgcttcatgtgggcgatgcttgctgcattgggtctgtcaaatctacgttatagtgaggctggaagctctcggaatattatcattgtcgggctatctttgtttttctcgctgtcaataccagcatattttcagcaatatggcatctctccaaactccaactcatctgttccaagttattttcagccatatattgtggcttctcatgggcccttccgcagcaaatatggagggatgaactatgtcctcaacacattattttcgttacacatggtgattgcattccttgtggctgttatcctggacaacacagtacctggaagtcgtcaagaacgtggtgtatatgtgtggtccgaacgtgaggttgcaaagagggagcctgccgttgccaaagactatgagctgcccttcagaattggccgggttttcagatgggtgaaatgggttggactttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

297

Amino Acids

32.41

Weight (kDa)

9.72

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27810 AT2G27810 AT2G27810 AT2G27810
fragaria_vesca	FvH4_3g24260
malus_domestica	MD03G1135100.v1.1 MD11G1157800.v1.1
prunus_persica	Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1
pyrus_communis	pycom03g09100 pycom11g12810
rosa_chinensis	RchiOBHm_Chr5g0043401
rosa_laevigata	RLG00000034184
rosa_multiflora	Rmu_sc0000060.1_g000066 Rmu_sc0007797.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037480
rosa_rugosa	Rorug05G0205700
rosa_samantha	Rh5AG291400 Rh5BG298000 Rh5CG327500 Rh5DG307400
rosa_wichuraiana	Rw0G010300 Rw5G027030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	203, 424
AciI	CCGC	2 cut(s)	254, 655
AcoI	YGGCCR	1 cut(s)	856
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	832
AdeI	CACNNNGTG	1 cut(s)	712
AfaI	GTAC	3 cut(s)	82, 268, 753
AfiI	CCNNNNNNNGG	2 cut(s)	203, 424
AgsI	TTSAA	3 cut(s)	129, 233, 347
AjnI	CCWGG	4 cut(s)	188, 202, 738, 754
AleI	CACNNNNGTG	1 cut(s)	439
AluBI	AGCT	3 cut(s)	314, 507, 841
AluI	AGCT	3 cut(s)	314, 507, 841
Alw21I	GWGCWC	1 cut(s)	306
Alw44I	GTGCAC	1 cut(s)	302
AlwNI	CAGNNNCTG	1 cut(s)	755
AoxI	GGCC	3 cut(s)	191, 647, 856
ApaI	GGGCCC	1 cut(s)	651
ApaLI	GTGCAC	1 cut(s)	302
ApeKI	GCWGC	4 cut(s)	431, 464, 657, 841
ApoI	RAATTY	1 cut(s)	37
AspS9I	GGNCC	4 cut(s)	279, 647, 648, 789
AsuC2I	CCSGG	1 cut(s)	860
AsuHPI	GGTGA	2 cut(s)	724, 886
AvaII	GGWCC	2 cut(s)	279, 789
BaeGI	GKGCMC	2 cut(s)	306, 651
BaeI	ACNNNNGTAYC	2 cut(s)	72, 105
BanII	GRGCYC	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	4 cut(s)	443, 451, 669, 828
BccI	CCATC	2 cut(s)	319, 864
BceAI	ACGGC	2 cut(s)	318, 806
BciT130I	CCWGG	4 cut(s)	190, 204, 740, 756
BcnI	CCSGG	1 cut(s)	860
BisI	GCNGC	4 cut(s)	432, 465, 658, 842
BlsI	GCNGC	4 cut(s)	433, 466, 659, 843
Bme1390I	CCNGG	5 cut(s)	190, 204, 740, 756, 860
Bme18I	GGWCC	2 cut(s)	279, 789
BmgT120I	GGNCC	4 cut(s)	279, 647, 648, 789
BmiI	GGNNCC	3 cut(s)	280, 649, 816
BmrFI	CCNGG	5 cut(s)	190, 204, 740, 756, 860
BmsI	GCATC	5 cut(s)	194, 255, 416, 447, 591
BpuMI	CCSGG	1 cut(s)	860
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 424
Bse1I	ACTGG	2 cut(s)	101, 274
BseBI	CCWGG	4 cut(s)	190, 204, 740, 756
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	2 cut(s)	185, 678
BseLI	CCNNNNNNNGG	2 cut(s)	203, 424
BseNI	ACTGG	2 cut(s)	101, 274
BseSI	GKGCMC	2 cut(s)	306, 651
BseXI	GCAGC	4 cut(s)	443, 451, 669, 828
BshFI	GGCC	3 cut(s)	193, 649, 858
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	859
BslI	CCNNNNNNNGG	2 cut(s)	203, 424
BsmI	GAATGC	1 cut(s)	719
BsnI	GGCC	3 cut(s)	193, 649, 858
Bsp120I	GGGCCC	1 cut(s)	647
Bsp1286I	GDGCHC	2 cut(s)	306, 651
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	254, 655
BspANI	GGCC	3 cut(s)	193, 649, 858
BspLI	GGNNCC	3 cut(s)	280, 649, 816
BsrI	ACTGG	2 cut(s)	101, 274
BssECI	CCNNGG	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	4 cut(s)	190, 204, 740, 756
Bst4CI	ACNGT	2 cut(s)	11, 751
BstC8I	GCNNGC	3 cut(s)	358, 462, 819
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	185, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNI	CCWGG	4 cut(s)	190, 204, 740, 756
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	5 cut(s)	188, 202, 738, 754, 858
BstSLI	GKGCMC	2 cut(s)	306, 651
BstV1I	GCAGC	4 cut(s)	443, 451, 669, 828
BstXI	CCANNNNNNTGG	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	193, 649, 858
BtgI	CCRYGG	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	470
BtsCI	GGATG	2 cut(s)	185, 678
BtsIMutI	CAGTG	3 cut(s)	7, 94, 147
Cac8I	GCNNGC	3 cut(s)	358, 462, 819
CaiI	CAGNNNCTG	1 cut(s)	755
Cfr13I	GGNCC	4 cut(s)	279, 647, 648, 789
Csp6I	GTAC	3 cut(s)	81, 267, 752
CviAII	CATG	8 cut(s)	29, 48, 164, 357, 424, 448, 644, 709
CviQI	GTAC	3 cut(s)	81, 267, 752
DdeI	CTNAG	1 cut(s)	321
DraIII	CACNNNGTG	1 cut(s)	712
EaeI	YGGCCR	1 cut(s)	856
Eco130I	CCWWGG	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	651
Eco47I	GGWCC	2 cut(s)	279, 789
Eco57I	CTGAAG	1 cut(s)	832
EcoO109I	RGGNCCY	1 cut(s)	648
EcoRII	CCWGG	4 cut(s)	188, 202, 738, 754
EcoT14I	CCWWGG	1 cut(s)	47
EcoT22I	ATGCAT	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	8 cut(s)	32, 51, 167, 360, 427, 451, 647, 712
FatI	CATG	8 cut(s)	28, 47, 163, 356, 423, 447, 643, 708
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	4 cut(s)	432, 465, 658, 842
FokI	GGATG	2 cut(s)	172, 685
FriOI	GRGCYC	1 cut(s)	651
Fsp4HI	GCNGC	4 cut(s)	432, 465, 658, 842
GluI	GCNGC	4 cut(s)	432, 465, 658, 842
HaeIII	GGCC	3 cut(s)	193, 649, 858
HapII	CCGG	1 cut(s)	859
Hin1II	CATG	8 cut(s)	32, 51, 167, 360, 427, 451, 647, 712
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	1 cut(s)	859
HphI	GGTGA	2 cut(s)	724, 886
Hpy166II	GTNNAC	2 cut(s)	282, 304
Hpy188I	TCNGA	4 cut(s)	513, 793, 851, 869
Hpy188III	TCNNGA	3 cut(s)	230, 364, 767
Hpy8I	GTNNAC	2 cut(s)	282, 304
HpyAV	CCTTC	3 cut(s)	227, 661, 856
HpyCH4III	ACNGT	2 cut(s)	11, 751
HpyCH4IV	ACGT	3 cut(s)	487, 772, 796
HpyCH4V	TGCA	8 cut(s)	32, 304, 356, 407, 431, 467, 719, 806
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	3 cut(s)	487, 772, 796
Hsp92II	CATG	8 cut(s)	32, 51, 167, 360, 427, 451, 647, 712
LmnI	GCTCC	1 cut(s)	814
Lsp1109I	GCAGC	4 cut(s)	443, 451, 669, 828
LweI	GCATC	5 cut(s)	194, 255, 416, 447, 591
MaeII	ACGT	3 cut(s)	487, 772, 796
MaeIII	GTNAC	3 cut(s)	69, 316, 702
MboII	GAAGA	2 cut(s)	33, 162
MhlI	GDGCHC	2 cut(s)	306, 651
MluCI	AATT	5 cut(s)	37, 129, 347, 411, 852
MmeI	TCCRAC	4 cut(s)	221, 373, 621, 865
MnlI	CCTC	9 cut(s)	204, 212, 371, 389, 490, 662, 695, 793, 804
Mph1103I	ATGCAT	1 cut(s)	34
MseI	TTAA	3 cut(s)	35, 290, 892
MslI	CAYNNNNRTG	2 cut(s)	323, 439
MspI	CCGG	1 cut(s)	859
MspR9I	CCNGG	5 cut(s)	190, 204, 740, 756, 860
Mva1269I	GAATGC	1 cut(s)	719
MvaI	CCWGG	4 cut(s)	190, 204, 740, 756
MwoI	GCNNNNNNNGC	1 cut(s)	461
NciI	CCSGG	1 cut(s)	860
NcoI	CCATGG	1 cut(s)	47
NlaIII	CATG	8 cut(s)	32, 51, 167, 360, 427, 451, 647, 712
NlaIV	GGNNCC	3 cut(s)	280, 649, 816
NmuCI	GTSAC	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	34
NspI	RCATGY	1 cut(s)	360
OliI	CACNNNNGTG	1 cut(s)	439
PaeI	GCATGC	1 cut(s)	360
PceI	AGGCCT	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	1 cut(s)	769
PctI	GAATGC	1 cut(s)	719
PfeI	GAWTC	1 cut(s)	146
PflMI	CCANNNNNTGG	2 cut(s)	203, 424
PfoI	TCCNGGA	1 cut(s)	738
PkrI	GCNGC	4 cut(s)	433, 466, 659, 843
Psp6I	CCWGG	4 cut(s)	188, 202, 738, 754
PspGI	CCWGG	4 cut(s)	188, 202, 738, 754
PspN4I	GGNNCC	3 cut(s)	280, 649, 816
PspOMI	GGGCCC	1 cut(s)	647
PspPI	GGNCC	4 cut(s)	279, 647, 648, 789
PstNI	CAGNNNCTG	1 cut(s)	755
RsaI	GTAC	3 cut(s)	82, 268, 753
RsaNI	GTAC	3 cut(s)	81, 267, 752
RseI	CAYNNNNRTG	2 cut(s)	323, 439
SaqAI	TTAA	3 cut(s)	35, 290, 892
SatI	GCNGC	4 cut(s)	432, 465, 658, 842
Sau96I	GGNCC	4 cut(s)	279, 647, 648, 789
ScrFI	CCNGG	5 cut(s)	190, 204, 740, 756, 860
SduI	GDGCHC	2 cut(s)	306, 651
SfaNI	GCATC	5 cut(s)	194, 255, 416, 447, 591
SinI	GGWCC	2 cut(s)	279, 789
SmiMI	CAYNNNNRTG	2 cut(s)	323, 439
SphI	GCATGC	1 cut(s)	360
Sse9I	AATT	5 cut(s)	37, 129, 347, 411, 852
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	2 cut(s)	254, 655
SspI	AATATT	1 cut(s)	517
StuI	AGGCCT	1 cut(s)	193
StyD4I	CCNGG	5 cut(s)	188, 202, 738, 754, 858
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	11, 751
TaiI	ACGT	3 cut(s)	490, 775, 799
TaqI	TCGA	2 cut(s)	13, 217
TasI	AATT	5 cut(s)	37, 129, 347, 411, 852
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	3 cut(s)	35, 290, 892
Tru9I	TTAA	3 cut(s)	35, 290, 892
TscAI	CASTG	3 cut(s)	14, 101, 147
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	4 cut(s)	431, 464, 657, 841
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	17, 436, 689
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	3 cut(s)	14, 101, 147
Van91I	CCANNNNNTGG	2 cut(s)	203, 424
VneI	GTGCAC	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	279, 789
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	1 cut(s)	360
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.