Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000060.1

Orthogroup ID

OG0007879

Physical Location & Seq

Genomic Coordinates Forward (+)

315427 .. 316511

Gene Structure 1085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000060.1_g000066.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atgtcgaactcggaccctaaacccactaggccgcgacccgggccgtggcccccggtcccggagggctcaccactgccgccctcgtcctgggccaagaagaccggcttccggcccaagttctccggcgagaccaatgccagtgattccggccagatagccttgcccccgccccgcccgacccgggagcccgagcccgatctcgaggcgggccgggttaggagccaaccgaaggccgcgaatggggagacggctccggcgccggtggcgaagccggctgctccgagtggggataaggatcaggcggtggtggtgaagaggaggaaggagtccgatggtgggtcgaagaatgcgggccacggaaccaatgggcaagcggcggcggttccggctgagcccaattcgcagccgaggagggcggcgaggagtgaagaagtggtggatgttttgcctggtagtgtggatgatgatgggtatgtgggcaggagttcacatatgaagtatgagctcagagacacgcccgggcttgttcccattggtctatatggattccagcattatctctccatattgggttcgataattttaattccactcgtcatagttccagcaatgggtggtacttatgaggatactgcaaacgtggtgtcgacagtgctctttgtttcgggagtgaccactctcttgcaaacgtcgtttggatcaagattgcccttgatacagggcccttcatttgtttacctagcacccgctttggcaataatcaattccccggaatttcaaggactcaatggaaatgtacgtgttcttgctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005345 GO:0005350 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008324 GO:0015075 GO:0015205 GO:0015207 GO:0015208 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015851 GO:0015853 GO:0015854 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0035344 GO:0042221 GO:0042493 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:0072531 GO:0098655 GO:0098657 GO:0098702 GO:0098710 GO:0098721 GO:0098739 GO:1903716 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

271

Amino Acids

28.5

Weight (kDa)

8.8

Isoelectric Point (pI)

52.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007879)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27810 AT2G27810 AT2G27810 AT2G27810
fragaria_vesca	FvH4_3g24260
malus_domestica	MD03G1135100.v1.1 MD11G1157800.v1.1
prunus_persica	Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1 Prupe.6G119500_v2.0.a1
pyrus_communis	pycom03g09100 pycom11g12810
rosa_chinensis	RchiOBHm_Chr5g0043401
rosa_laevigata	RLG00000034184
rosa_multiflora	Rmu_sc0000060.1_g000066 Rmu_sc0007797.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037480
rosa_rugosa	Rorug05G0205700
rosa_samantha	Rh5AG291400 Rh5BG298000 Rh5CG327500 Rh5DG307400
rosa_wichuraiana	Rw0G010300 Rw5G027030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	647
AccII	CGCG	2 cut(s)	34, 236
AclWI	GGATC	2 cut(s)	303, 706
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	773
AcyI	GRCGYC	1 cut(s)	257
AfaI	GTAC	2 cut(s)	619, 798
AflIII	ACRYGT	1 cut(s)	799
AgsI	TTSAA	1 cut(s)	779
AjnI	CCWGG	2 cut(s)	86, 448
AluBI	AGCT	1 cut(s)	505
AluI	AGCT	1 cut(s)	505
Alw21I	GWGCWC	2 cut(s)	507, 657
Alw26I	GTCTC	3 cut(s)	122, 239, 504
AlwI	GGATC	2 cut(s)	303, 706
Ama87I	CYCGRG	5 cut(s)	38, 180, 188, 200, 518
ApaI	GGGCCC	1 cut(s)	725
ApeKI	GCWGC	2 cut(s)	275, 403
ApoI	RAATTY	1 cut(s)	773
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
AspLEI	GCGC	1 cut(s)	259
AsuHPI	GGTGA	2 cut(s)	60, 322
AvaI	CYCGRG	5 cut(s)	38, 180, 188, 200, 518
AvaII	GGWCC	2 cut(s)	13, 55
BaeGI	GKGCMC	1 cut(s)	725
BanI	GGYRCC	1 cut(s)	256
BanII	GRGCYC	6 cut(s)	68, 189, 195, 396, 507, 725
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	2 cut(s)	507, 657
BbvI	GCAGC	2 cut(s)	262, 415
BccI	CCATC	2 cut(s)	326, 461
BceAI	ACGGC	2 cut(s)	28, 264
BcgI	CGANNNNNNTGC	2 cut(s)	116, 150
BciT130I	CCWGG	2 cut(s)	88, 450
BciVI	GTATCC	1 cut(s)	622
BcoDI	GTCTC	3 cut(s)	122, 239, 504
BfaI	CTAG	2 cut(s)	27, 740
BfoI	RGCGCY	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	622
BisI	GCNGC	8 cut(s)	32, 77, 234, 276, 375, 378, 404, 417
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	8 cut(s)	33, 78, 235, 277, 376, 379, 405, 418
Bme18I	GGWCC	2 cut(s)	13, 55
BmeT110I	CYCGRG	5 cut(s)	38, 180, 188, 200, 518
BpiI	GAAGAC	1 cut(s)	104
Bpu1102I	GCTNAGC	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	800
BsaBI	GATNNNNATC	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	9 cut(s)	38, 44, 51, 87, 180, 355, 407, 518, 768
Bse118I	RCCGGY	3 cut(s)	101, 259, 271
Bse1I	ACTGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	615
Bse8I	GATNNNNATC	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	88, 450
BseDI	CCNNGG	9 cut(s)	38, 44, 51, 87, 180, 355, 407, 518, 768
BseGI	GGATG	2 cut(s)	445, 466
BseJI	GATNNNNATC	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	2 cut(s)	381, 520
BseNI	ACTGG	1 cut(s)	138
BseRI	GAGGAG	3 cut(s)	331, 424, 436
BseSI	GKGCMC	1 cut(s)	725
BseXI	GCAGC	2 cut(s)	262, 415
Bsh1236I	CGCG	2 cut(s)	34, 236
BshNI	GGYRCC	1 cut(s)	256
BsiHKAI	GWGCWC	2 cut(s)	507, 657
BsiHKCI	CYCGRG	5 cut(s)	38, 180, 188, 200, 518
BslFI	GGGAC	1 cut(s)	41
BsmAI	GTCTC	3 cut(s)	122, 239, 504
BsmBI	CGTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	352
Bso31I	GGTCTC	1 cut(s)	122
BsoBI	CYCGRG	5 cut(s)	38, 180, 188, 200, 518
Bsp120I	GGGCCC	1 cut(s)	721
Bsp1286I	GDGCHC	7 cut(s)	68, 189, 195, 396, 507, 657, 725
Bsp143I	GATC	3 cut(s)	196, 295, 698
Bsp1720I	GCTNAGC	1 cut(s)	390
BspCNI	CTCAG	2 cut(s)	382, 519
BspFNI	CGCG	2 cut(s)	34, 236
BspPI	GGATC	2 cut(s)	303, 706
BspT107I	GGYRCC	1 cut(s)	256
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	615
BsrFI	RCCGGY	3 cut(s)	101, 259, 271
BsrI	ACTGG	1 cut(s)	138
BssAI	RCCGGY	3 cut(s)	101, 259, 271
BssECI	CCNNGG	9 cut(s)	38, 44, 51, 87, 180, 355, 407, 518, 768
BssMI	GATC	3 cut(s)	196, 295, 698
BssNI	GRCGYC	1 cut(s)	257
Bst2UI	CCWGG	2 cut(s)	88, 450
Bst4CI	ACNGT	1 cut(s)	652
Bst6I	CTCTTC	1 cut(s)	308
BstACI	GRCGYC	1 cut(s)	257
BstBAI	YACGTR	1 cut(s)	800
BstC8I	GCNNGC	4 cut(s)	208, 273, 352, 372
BstDEI	CTNAG	2 cut(s)	390, 506
BstDSI	CCRYGG	2 cut(s)	44, 355
BstF5I	GGATG	2 cut(s)	445, 466
BstFNI	CGCG	2 cut(s)	34, 236
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	3 cut(s)	199, 298, 701
BstMAI	GTCTC	3 cut(s)	122, 239, 504
BstMBI	GATC	3 cut(s)	196, 295, 698
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 263, 272, 386, 400
BstNI	CCWGG	2 cut(s)	88, 450
BstSLI	GKGCMC	1 cut(s)	725
BstUI	CGCG	2 cut(s)	34, 236
BstV1I	GCAGC	2 cut(s)	262, 415
BstV2I	GAAGAC	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	622
BtgI	CCRYGG	2 cut(s)	44, 355
BtsCI	GGATG	2 cut(s)	445, 466
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	3 cut(s)	71, 145, 657
Cac8I	GCNNGC	4 cut(s)	208, 273, 352, 372
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	3 cut(s)	101, 259, 271
Cfr9I	CCCGGG	3 cut(s)	38, 180, 518
Csp6I	GTAC	2 cut(s)	618, 797
CviQI	GTAC	2 cut(s)	618, 797
DdeI	CTNAG	2 cut(s)	390, 506
DinI	GGCGCC	1 cut(s)	258
DpnI	GATC	3 cut(s)	198, 297, 700
DpnII	GATC	3 cut(s)	196, 295, 698
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	505
Eco24I	GRGCYC	6 cut(s)	68, 189, 195, 396, 507, 725
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	2 cut(s)	13, 55
Eco53kI	GAGCTC	1 cut(s)	505
Eco88I	CYCGRG	5 cut(s)	38, 180, 188, 200, 518
EcoICRI	GAGCTC	1 cut(s)	505
EcoO109I	RGGNCCY	2 cut(s)	721, 722
EcoRII	CCWGG	2 cut(s)	86, 448
EcoT38I	GRGCYC	6 cut(s)	68, 189, 195, 396, 507, 725
EgeI	GGCGCC	1 cut(s)	258
EheI	GGCGCC	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	239
FaiI	YATR	9 cut(s)	474, 492, 494, 501, 541, 543, 566, 599, 624
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	41
FauI	CCCGC	5 cut(s)	174, 179, 199, 343, 754
FauNDI	CATATG	1 cut(s)	492
FblI	GTMKAC	1 cut(s)	647
Fnu4HI	GCNGC	8 cut(s)	32, 77, 234, 276, 375, 378, 404, 417
FokI	GGATG	2 cut(s)	452, 473
FriOI	GRGCYC	6 cut(s)	68, 189, 195, 396, 507, 725
Fsp4HI	GCNGC	8 cut(s)	32, 77, 234, 276, 375, 378, 404, 417
FspBI	CTAG	2 cut(s)	27, 740
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	8 cut(s)	32, 77, 234, 276, 375, 378, 404, 417
HaeII	RGCGCY	1 cut(s)	260
HhaI	GCGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	257
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	648
HindII	GTYRAC	1 cut(s)	648
HinfI	GANTC	4 cut(s)	143, 326, 546, 783
HphI	GGTGA	2 cut(s)	60, 322
Hpy166II	GTNNAC	3 cut(s)	488, 648, 736
Hpy188I	TCNGA	4 cut(s)	13, 282, 331, 509
Hpy188III	TCNNGA	3 cut(s)	200, 666, 702
Hpy8I	GTNNAC	3 cut(s)	488, 648, 736
Hpy99I	CGWCG	1 cut(s)	694
HpyAV	CCTTC	3 cut(s)	223, 316, 735
HpyCH4III	ACNGT	1 cut(s)	652
HpyCH4IV	ACGT	3 cut(s)	639, 689, 799
HpyCH4V	TGCA	2 cut(s)	635, 685
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 263, 272, 386, 400
HpyF3I	CTNAG	2 cut(s)	390, 506
HpySE526I	ACGT	3 cut(s)	639, 689, 799
Hsp92I	GRCGYC	1 cut(s)	257
HspAI	GCGC	1 cut(s)	257
KasI	GGCGCC	1 cut(s)	256
KroI	GCCGGC	1 cut(s)	271
KroNI	GCCGGC	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	196, 295, 698
LmnI	GCTCC	4 cut(s)	184, 219, 256, 283
Lsp1109I	GCAGC	2 cut(s)	262, 415
MaeI	CTAG	2 cut(s)	27, 740
MaeII	ACGT	3 cut(s)	639, 689, 799
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	3 cut(s)	198, 297, 700
MboI	GATC	3 cut(s)	196, 295, 698
MboII	GAAGA	4 cut(s)	109, 325, 355, 440
MhlI	GDGCHC	7 cut(s)	68, 189, 195, 396, 507, 657, 725
MluCI	AATT	5 cut(s)	397, 579, 585, 763, 773
Mly113I	GGCGCC	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	335, 777
MnlI	CCTC	9 cut(s)	55, 91, 196, 309, 312, 402, 405, 414, 619
MroNI	GCCGGC	1 cut(s)	271
MseI	TTAA	2 cut(s)	584, 814
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	2 cut(s)	88, 450
MvnI	CGCG	2 cut(s)	34, 236
MwoI	GCNNNNNNNGC	5 cut(s)	40, 263, 272, 386, 400
NaeI	GCCGGC	1 cut(s)	273
NarI	GGCGCC	1 cut(s)	257
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	3 cut(s)	196, 295, 698
NgoMIV	GCCGGC	1 cut(s)	271
NmeAIII	GCCGAG	1 cut(s)	432
NmuCI	GTSAC	1 cut(s)	670
PaeR7I	CTCGAG	1 cut(s)	200
PctI	GAATGC	1 cut(s)	352
PdiI	GCCGGC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	143, 546
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	8 cut(s)	33, 78, 235, 277, 376, 379, 405, 418
PleI	GAGTC	2 cut(s)	334, 777
PluTI	GGCGCC	1 cut(s)	260
PpsI	GAGTC	2 cut(s)	334, 777
Ppu21I	YACGTR	1 cut(s)	800
Psp124BI	GAGCTC	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	86, 448
PspGI	CCWGG	2 cut(s)	86, 448
PspOMI	GGGCCC	1 cut(s)	721
RsaI	GTAC	2 cut(s)	619, 798
RsaNI	GTAC	2 cut(s)	618, 797
SacI	GAGCTC	1 cut(s)	507
SalI	GTCGAC	1 cut(s)	646
SaqAI	TTAA	2 cut(s)	584, 814
SatI	GCNGC	8 cut(s)	32, 77, 234, 276, 375, 378, 404, 417
Sau3AI	GATC	3 cut(s)	196, 295, 698
SchI	GAGTC	2 cut(s)	335, 777
SduI	GDGCHC	7 cut(s)	68, 189, 195, 396, 507, 657, 725
SetI	ASST	5 cut(s)	507, 642, 692, 741, 802
SfoI	GGCGCC	1 cut(s)	258
Sfr274I	CTCGAG	1 cut(s)	200
SgrAI	CRCCGGYG	1 cut(s)	259
SinI	GGWCC	2 cut(s)	13, 55
SlaI	CTCGAG	1 cut(s)	200
SmaI	CCCGGG	3 cut(s)	40, 182, 520
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SrfI	GCCCGGGC	1 cut(s)	520
Sse9I	AATT	5 cut(s)	397, 579, 585, 763, 773
SspDI	GGCGCC	1 cut(s)	256
SspMI	CTAG	2 cut(s)	27, 740
SstI	GAGCTC	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	652
TaiI	ACGT	3 cut(s)	642, 692, 802
TaqI	TCGA	5 cut(s)	5, 201, 341, 575, 647
TasI	AATT	5 cut(s)	397, 579, 585, 763, 773
TauI	GCSGC	6 cut(s)	34, 79, 236, 377, 380, 419
TfiI	GAWTC	2 cut(s)	143, 546
Tru1I	TTAA	2 cut(s)	584, 814
Tru9I	TTAA	2 cut(s)	584, 814
TscAI	CASTG	3 cut(s)	78, 145, 657
TseFI	GTSAC	1 cut(s)	670
TseI	GCWGC	2 cut(s)	275, 403
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	2 cut(s)	509, 717
TspGWI	ACGGA	1 cut(s)	372
TspMI	CCCGGG	3 cut(s)	38, 180, 518
TspRI	CASTG	3 cut(s)	78, 145, 657
VpaK11BI	GGWCC	2 cut(s)	13, 55
XapI	RAATTY	1 cut(s)	773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XhoI	CTCGAG	1 cut(s)	200
XmaI	CCCGGG	3 cut(s)	38, 180, 518
XmiI	GTMKAC	1 cut(s)	647
XspI	CTAG	2 cut(s)	27, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.