Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009546

Physical Location & Seq

Genomic Coordinates Forward (+)

8854510 .. 8856849

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G119600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAGGTTGGAAAAATGCTGGTTTTGCTCCTCTACAGTATATCCTGGACATGGGATTCAGTTTGTTCGTAATGATGCAAAGATTTTTCGATTCTGTAGGTCCAAATGCCACAAGAACTTTAAAATGAAGAGGAATCCTCGCAAAGTAAAATGGACTAAGGCCTATAGGCGTTTGCGTGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGAAAGAGAAATAGGCCCGAGAGATATGACAGAAATCTCACAGAAAACACCCTCAAGGCCATTAAGAAGATCGACAAAGTCAGAATCATCAGAGAGGAAAGACACCATGAGAAGAGGATGAAGGGCAAGAAAGCCAAGGAGAACAGAGAGGCAGTAAAAGAGTTGGAACAGAGCATCAGCTTGGTCAAAGCGCCAACTGCACTTCAACAAGATCCATCACTCACCTTACCGATCAAAGTCAAGGTTTCACAACAGCAACCCGAAAAAACTGTTGCCATGATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902626 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

168

Amino Acids

20.05

Weight (kDa)

10.31

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44860 AT2G44860
fragaria_vesca	FvH4_3g24270
malus_domestica	MD03G1135200.v1.1 MD11G1157900.v1.1
prunus_persica	Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.6G119600_v2.0.a1
pyrus_communis	pycom03g09110 pycom11g12820
rosa_chinensis	RchiOBHm_Chr5g0043411
rosa_laevigata	RLG00000034185
rosa_multiflora	Rmu_sc0000060.1_g000067
rosa_roxburghii	Rroxscaffold_1G00037470
rosa_rugosa	Rorug05G0205700 Rorug05G0205700
rosa_samantha	Rh5AG291500 Rh5BG298100 Rh5CG327600 Rh5DG307500
rosa_wichuraiana	Rw5G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	1 cut(s)	422
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	1 cut(s)	396
AluI	AGCT	1 cut(s)	396
AlwI	GGATC	1 cut(s)	422
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	3 cut(s)	159, 230, 273
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	99, 231
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	99
BccI	CCATC	2 cut(s)	439, 490
BciT130I	CCWGG	1 cut(s)	45
BfmI	CTRYAG	3 cut(s)	33, 94, 163
BfoI	RGCGCY	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	99
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	2 cut(s)	99, 231
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	64, 399
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpuEI	CTTGAG	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	19
BsgI	GTGCAG	1 cut(s)	399
BshFI	GGCC	3 cut(s)	161, 232, 275
BsiHKCI	CYCGRG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	3 cut(s)	161, 232, 275
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	285, 427, 447
BspANI	GGCC	3 cut(s)	161, 232, 275
BspPI	GGATC	1 cut(s)	422
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	3 cut(s)	285, 427, 447
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	37, 487
Bst6I	CTCTTC	2 cut(s)	122, 323
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	288, 430, 450
BstMBI	GATC	3 cut(s)	285, 427, 447
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 413
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	3 cut(s)	33, 94, 163
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	3 cut(s)	161, 232, 275
BtsCI	GGATG	1 cut(s)	339
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	2 cut(s)	99, 231
CviAII	CATG	3 cut(s)	50, 323, 493
CviJI	RGCY	5 cut(s)	161, 232, 275, 350, 396
CviKI_1	RGCY	5 cut(s)	161, 232, 275, 350, 396
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	287, 429, 449
DpnII	GATC	3 cut(s)	285, 427, 447
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	122, 323
EarI	CTCTTC	2 cut(s)	122, 323
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	99
Eco88I	CYCGRG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	43
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	53, 326, 496
FaiI	YATR	7 cut(s)	40, 51, 165, 188, 243, 324, 494
FatI	CATG	3 cut(s)	49, 322, 492
FokI	GGATG	1 cut(s)	346
GlaI	GCGC	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	3 cut(s)	161, 232, 275
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	3 cut(s)	53, 326, 496
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	5 cut(s)	55, 90, 133, 197, 300
HphI	GGTGA	1 cut(s)	430
Hpy188I	TCNGA	2 cut(s)	299, 308
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	2 cut(s)	37, 487
HpyCH4V	TGCA	2 cut(s)	77, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 413
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	53, 326, 496
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	3 cut(s)	285, 427, 447
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	4 cut(s)	4, 30, 57, 179
LweI	GCATC	2 cut(s)	64, 399
MalI	GATC	3 cut(s)	287, 429, 449
MboI	GATC	3 cut(s)	285, 427, 447
MboII	GAAGA	3 cut(s)	139, 295, 340
MflI	RGATCY	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	7 cut(s)	40, 123, 147, 278, 304, 324, 358
MseI	TTAA	2 cut(s)	120, 279
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	24, 413
NdeII	GATC	3 cut(s)	285, 427, 447
NlaIII	CATG	3 cut(s)	53, 326, 496
PceI	AGGCCT	1 cut(s)	161
PfeI	GAWTC	4 cut(s)	55, 90, 133, 300
PflFI	GACNNNGTC	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	43
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	99, 231
PsuI	RGATCY	1 cut(s)	427
PsyI	GACNNNGTC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	120, 279
Sau3AI	GATC	3 cut(s)	285, 427, 447
Sau96I	GGNCC	2 cut(s)	99, 231
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	5 cut(s)	8, 101, 398, 443, 462
SfaNI	GCATC	2 cut(s)	64, 399
SfcI	CTRYAG	3 cut(s)	33, 94, 163
SinI	GGWCC	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SseBI	AGGCCT	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	37, 487
TaqI	TCGA	2 cut(s)	88, 288
TfiI	GAWTC	4 cut(s)	55, 90, 133, 300
Tru1I	TTAA	2 cut(s)	120, 279
Tru9I	TTAA	2 cut(s)	120, 279
TspDTI	ATGAA	2 cut(s)	140, 350
Tth111I	GACNNNGTC	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.