Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009546

Physical Location & Seq

Genomic Coordinates Reverse (-)

17256146 .. 17258387

Gene Structure 2242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24270.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGGTTGGAGAAGTGCTGGTTCTGTTCTTCAACTGTATATCCTGGGCATGGTATTCAGTTTGTTCGTAATGATGCAAAGATTTTTCGATTTTGTAGATCTAAATGCCACAAGAACTTTAAAATGAAGAGAAATCCTCGCAAGGTGAAGTGGACTAAGGCGTACAGGCGGTTGCGTGGAAAGGATATGACACAGGATTCAACATTTGAGTTTGAGAGAAAGAGAAATAGGCCTGAGAGATATGACAGGAATCTTGCAGAAAACACACTGAAGGCCATTAAGAAGATTGATAAGGTTAGAGTCGACAGAGAGGCGAAGCACCACGAGAAGAGGATGAAGGGCAGGAAAACCAAGATAGGAGATCAAGCAAGAAAGGAATTGATACAGAGCATCAACATGGTCCAAGCTCCCGATTCGATTCGACAAGATCGATCAGAAAAAATCAAGGTCCCAAAGCAAGTGGAACAAACCGCAATGGAGGTGGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902626 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

164

Amino Acids

19.69

Weight (kDa)

10.29

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	1 - 65	1.6e-33	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44860 AT2G44860
fragaria_vesca	FvH4_3g24270
malus_domestica	MD03G1135200.v1.1 MD11G1157900.v1.1
prunus_persica	Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.6G119600_v2.0.a1
pyrus_communis	pycom03g09110 pycom11g12820
rosa_chinensis	RchiOBHm_Chr5g0043411
rosa_laevigata	RLG00000034185
rosa_multiflora	Rmu_sc0000060.1_g000067
rosa_roxburghii	Rroxscaffold_1G00037470
rosa_rugosa	Rorug05G0205700 Rorug05G0205700
rosa_samantha	Rh5AG291500 Rh5BG298100 Rh5CG327600 Rh5DG307500
rosa_wichuraiana	Rw5G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	2 cut(s)	169, 471
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	33, 201
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
AoxI	GGCC	2 cut(s)	230, 273
AspS9I	GGNCC	2 cut(s)	400, 448
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	2 cut(s)	400, 448
BauI	CACGAG	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	45
BglII	AGATCT	1 cut(s)	98
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	2 cut(s)	400, 448
BmgT120I	GGNCC	2 cut(s)	400, 448
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	64, 399
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
Bsa29I	ATCGAT	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	430
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	232, 275
BshVI	ATCGAT	1 cut(s)	430
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	232, 275
Bsp143I	GATC	4 cut(s)	98, 361, 427, 431
BspACI	CCGC	2 cut(s)	169, 471
BspANI	GGCC	2 cut(s)	232, 275
BspCNI	CTCAG	1 cut(s)	226
BspDI	ATCGAT	1 cut(s)	430
BspLI	GGNNCC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	4 cut(s)	98, 361, 427, 431
BssSI	CACGAG	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	122, 323
BstDEI	CTNAG	2 cut(s)	156, 234
BstF5I	GGATG	1 cut(s)	339
BstKTI	GATC	4 cut(s)	101, 364, 430, 434
BstMBI	GATC	4 cut(s)	98, 361, 427, 431
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
Bsu15I	ATCGAT	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	232, 275
BsuTUI	ATCGAT	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	400, 448
ClaI	ATCGAT	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	163
CspCI	CAANNNNNGTGG	3 cut(s)	441, 462, 476
CviAII	CATG	2 cut(s)	50, 397
CviJI	RGCY	3 cut(s)	232, 275, 407
CviKI_1	RGCY	3 cut(s)	232, 275, 407
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	2 cut(s)	156, 234
DpnI	GATC	4 cut(s)	100, 363, 429, 433
DpnII	GATC	4 cut(s)	98, 361, 427, 431
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	122, 323
EarI	CTCTTC	2 cut(s)	122, 323
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	2 cut(s)	400, 448
Eco57I	CTGAAG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	43
FaeI	CATG	2 cut(s)	53, 400
FaiI	YATR	5 cut(s)	40, 51, 188, 243, 398
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	2 cut(s)	49, 396
FblI	GTMKAC	1 cut(s)	303
FokI	GGATG	1 cut(s)	346
HaeIII	GGCC	2 cut(s)	232, 275
Hin1II	CATG	2 cut(s)	53, 400
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	5 cut(s)	197, 250, 300, 413, 418
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	153, 304
Hpy188I	TCNGA	1 cut(s)	436
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	2 cut(s)	153, 304
HpyAV	CCTTC	2 cut(s)	265, 331
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	2 cut(s)	77, 257
HpyF3I	CTNAG	2 cut(s)	156, 234
Hsp92II	CATG	2 cut(s)	53, 400
Kzo9I	GATC	4 cut(s)	98, 361, 427, 431
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	8 cut(s)	4, 30, 57, 151, 179, 232, 246, 328
LweI	GCATC	2 cut(s)	64, 399
MalI	GATC	4 cut(s)	100, 363, 429, 433
MboI	GATC	4 cut(s)	98, 361, 427, 431
MboII	GAAGA	4 cut(s)	21, 139, 295, 340
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	309
MnlI	CCTC	5 cut(s)	147, 304, 324, 472, 478
MseI	TTAA	2 cut(s)	120, 279
MslI	CAYNNNNRTG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
NdeII	GATC	4 cut(s)	98, 361, 427, 431
NlaIII	CATG	2 cut(s)	53, 400
NlaIV	GGNNCC	1 cut(s)	450
PceI	AGGCCT	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	427
PfeI	GAWTC	4 cut(s)	197, 250, 413, 418
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PpuMI	RGGWCCY	1 cut(s)	448
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	450
PspPI	GGNCC	2 cut(s)	400, 448
PspPPI	RGGWCCY	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	395
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	120, 279
Sau3AI	GATC	4 cut(s)	98, 361, 427, 431
Sau96I	GGNCC	2 cut(s)	400, 448
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	6 cut(s)	8, 147, 297, 409, 450, 483
SfaNI	GCATC	2 cut(s)	64, 399
SinI	GGWCC	2 cut(s)	400, 448
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	377
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	2 cut(s)	169, 471
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	5 cut(s)	88, 303, 416, 421, 430
TasI	AATT	1 cut(s)	377
TfiI	GAWTC	4 cut(s)	197, 250, 413, 418
Tru1I	TTAA	2 cut(s)	120, 279
Tru9I	TTAA	2 cut(s)	120, 279
TscAI	CASTG	1 cut(s)	273
TspDTI	ATGAA	2 cut(s)	140, 350
TspRI	CASTG	1 cut(s)	273
VpaK11BI	GGWCC	2 cut(s)	400, 448
XmiI	GTMKAC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.