Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009546

Physical Location & Seq

Genomic Coordinates Reverse (-)

36395459 .. 36397804

Gene Structure 2346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG327600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAGAGGAATCCTCGCAAGGTGAAGTGGACTAAGGCCTATAGGCGGTTGCGTGGAAAGGATATGACACAGGATTCAACTTTTGAGTTTGAGAGGAAGAGAAATAGGCCCGAGAGATATGATAGGAATCTTACAGAAAACACTCTCAAGGCCATTAAGAAGATTGATAAGGTTAGAGTCGACAGAGAGGCCAAGCACCATCAGAAGAGGATGAAAAAGGACAAGAGACCCAAGATAAACATAGATGCACAGGAATTGAAACAGAGCCTCAACATGGTCAAAGCTCCCGATGCGCTTCGACAAGATCTGTTGAAAAAAGTCAAGGTCCAAAAGCAAGTGGACCAAACCTATGCAATGGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902626 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

121

Amino Acids

14.75

Weight (kDa)

10.38

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	1 - 24	2.4e-07	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44860 AT2G44860
fragaria_vesca	FvH4_3g24270
malus_domestica	MD03G1135200.v1.1 MD11G1157900.v1.1
prunus_persica	Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.6G119600_v2.0.a1
pyrus_communis	pycom03g09110 pycom11g12820
rosa_chinensis	RchiOBHm_Chr5g0043411
rosa_laevigata	RLG00000034185
rosa_multiflora	Rmu_sc0000060.1_g000067
rosa_roxburghii	Rroxscaffold_1G00037470
rosa_rugosa	Rorug05G0205700 Rorug05G0205700
rosa_samantha	Rh5AG291500 Rh5BG298100 Rh5CG327600 Rh5DG307500
rosa_wichuraiana	Rw5G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	45, 274
AgsI	TTSAA	3 cut(s)	78, 259, 313
AluBI	AGCT	1 cut(s)	284
AluI	AGCT	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	220
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	4 cut(s)	36, 107, 150, 189
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	3 cut(s)	108, 325, 340
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	2 cut(s)	325, 340
BccI	CCATC	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	220
BfmI	CTRYAG	1 cut(s)	40
BglII	AGATCT	1 cut(s)	304
Bme18I	GGWCC	2 cut(s)	325, 340
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	3 cut(s)	108, 325, 340
BmsI	GCATC	2 cut(s)	235, 280
BplI	GAGNNNNNCTC	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 274
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	126
BseGI	GGATG	1 cut(s)	216
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	45, 274
BseMI	GCAATG	1 cut(s)	360
BshFI	GGCC	4 cut(s)	38, 109, 152, 191
BsiHKCI	CYCGRG	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	45, 274
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	4 cut(s)	38, 109, 152, 191
Bso31I	GGTCTC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	4 cut(s)	38, 109, 152, 191
BspTNI	GGTCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	360
BssMI	GATC	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	92, 200
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSFI	CTRYAG	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	4 cut(s)	38, 109, 152, 191
BtsCI	GGATG	1 cut(s)	216
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	3 cut(s)	108, 325, 340
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	6 cut(s)	38, 109, 152, 191, 267, 284
CviKI_1	RGCY	6 cut(s)	38, 109, 152, 191, 267, 284
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eam1104I	CTCTTC	2 cut(s)	92, 200
EarI	CTCTTC	2 cut(s)	92, 200
Eco147I	AGGCCT	1 cut(s)	38
Eco31I	GGTCTC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	325, 340
Eco88I	CYCGRG	1 cut(s)	110
FaeI	CATG	1 cut(s)	277
FaiI	YATR	6 cut(s)	42, 65, 120, 242, 275, 351
FatI	CATG	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	180
FokI	GGATG	1 cut(s)	223
GlaI	GCGC	1 cut(s)	294
HaeIII	GGCC	4 cut(s)	38, 109, 152, 191
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	10, 74, 127, 177
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	3 cut(s)	30, 181, 340
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	3 cut(s)	30, 181, 340
HpyCH4V	TGCA	2 cut(s)	248, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	2 cut(s)	56, 236
LweI	GCATC	2 cut(s)	235, 280
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	4 cut(s)	16, 109, 172, 217
MflI	RGATCY	1 cut(s)	304
MluCI	AATT	1 cut(s)	254
MlyI	GAGTC	1 cut(s)	186
MnlI	CCTC	6 cut(s)	24, 87, 181, 201, 278, 352
MseI	TTAA	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	1 cut(s)	277
PceI	AGGCCT	1 cut(s)	38
PfeI	GAWTC	3 cut(s)	10, 74, 127
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PspPI	GGNCC	3 cut(s)	108, 325, 340
PsuI	RGATCY	1 cut(s)	304
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	3 cut(s)	108, 325, 340
SchI	GAGTC	1 cut(s)	186
SetI	ASST	5 cut(s)	24, 174, 286, 327, 350
SfaNI	GCATC	2 cut(s)	235, 280
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	2 cut(s)	325, 340
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	254
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	46
StuI	AGGCCT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	180, 298
TasI	AATT	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	10, 74, 127
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TspDTI	ATGAA	2 cut(s)	17, 227
VpaK11BI	GGWCC	2 cut(s)	325, 340
XmiI	GTMKAC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.