Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009546

Physical Location & Seq

Genomic Coordinates Forward (+)

13536285 .. 13538790

Gene Structure 2506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1135200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGGTTGGAAAAGTGCTGGTTTTGTTCCTCTACTGTATACCCCGGACATGGGATTCAGTTTGTTCGCAATGACGCAAAGATTTTTCGATTCTGTAGATCCAAATGCCACAAGAACTTTAAGATGAAGAGGAATCCTCGAAAGGTGAAGTGGACTAAGGCCTATAGGCGGTTGCGTGGAAAGGACATGACACAGGACTCCACTTTTGAGTTTGAGAGAAAACGAAATAGGCCTGAGAGATACGACAGGAGTCTTACAGAAAACACTCTGAAGGCAATTAAGAAGATCGATAAAGTCAGAATTGAGAGAGAGGCCAGACACCACAAGAATAGGATGAAGGGCAAGAATGTCAAAGAGCAAAATGAGAAAAGGAAAGAGATTGACCATAGCCTCCACTTGGTCATATCTCCGATCGCGCAACAGCAAGAGCCATCACTCGTCAAGGTTTCCCAACCATATCTCGAGAAACACGTTGCCATGGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902626 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

163

Amino Acids

19.66

Weight (kDa)

10.22

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	1 - 65	1.6e-33	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44860 AT2G44860
fragaria_vesca	FvH4_3g24270
malus_domestica	MD03G1135200.v1.1 MD11G1157900.v1.1
prunus_persica	Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.6G119600_v2.0.a1
pyrus_communis	pycom03g09110 pycom11g12820
rosa_chinensis	RchiOBHm_Chr5g0043411
rosa_laevigata	RLG00000034185
rosa_multiflora	Rmu_sc0000060.1_g000067
rosa_roxburghii	Rroxscaffold_1G00037470
rosa_rugosa	Rorug05G0205700 Rorug05G0205700
rosa_samantha	Rh5AG291500 Rh5BG298100 Rh5CG327600 Rh5DG307500
rosa_wichuraiana	Rw5G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	416
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	290
AfiI	CCNNNNNNNGG	4 cut(s)	50, 51, 168, 397
AflIII	ACRYGT	1 cut(s)	469
AlwI	GGATC	1 cut(s)	93
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	3 cut(s)	159, 230, 312
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspLEI	GCGC	1 cut(s)	418
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	461
BccI	CCATC	1 cut(s)	439
BcnI	CCSGG	1 cut(s)	45
BfmI	CTRYAG	2 cut(s)	94, 163
Bme1390I	CCNGG	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	45
BoxI	GACNNNNGTC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpuMI	CCSGG	1 cut(s)	45
Bsa29I	ATCGAT	1 cut(s)	288
BsaJI	CCNNGG	2 cut(s)	43, 477
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 51, 168, 397
Bse3DI	GCAATG	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	43, 477
BseGI	GGATG	1 cut(s)	339
BseLI	CCNNNNNNNGG	4 cut(s)	50, 51, 168, 397
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	414
BshFI	GGCC	3 cut(s)	161, 232, 314
BshVI	ATCGAT	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	414
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	4 cut(s)	50, 51, 168, 397
BsnI	GGCC	3 cut(s)	161, 232, 314
BsoBI	CYCGRG	1 cut(s)	461
Bsp143I	GATC	3 cut(s)	98, 285, 411
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	3 cut(s)	161, 232, 314
BspCNI	CTCAG	1 cut(s)	226
BspDI	ATCGAT	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	416
BspPI	GGATC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	76
BssECI	CCNNGG	2 cut(s)	43, 477
BssMI	GATC	3 cut(s)	98, 285, 411
BssNAI	GTATAC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	477
Bst1107I	GTATAC	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	156, 234
BstDSI	CCRYGG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	3 cut(s)	101, 288, 414
BstMBI	GATC	3 cut(s)	98, 285, 411
BstMCI	CGRYCG	1 cut(s)	414
BstPAI	GACNNNNGTC	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	2 cut(s)	94, 163
BstUI	CGCG	1 cut(s)	416
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BstZ17I	GTATAC	1 cut(s)	40
Bsu15I	ATCGAT	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	161, 232, 314
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	477
BtsCI	GGATG	1 cut(s)	339
CfoI	GCGC	1 cut(s)	418
ClaI	ATCGAT	1 cut(s)	288
CseI	GACGC	1 cut(s)	83
CviAII	CATG	3 cut(s)	50, 187, 478
CviJI	RGCY	5 cut(s)	161, 232, 314, 390, 430
CviKI_1	RGCY	5 cut(s)	161, 232, 314, 390, 430
DdeI	CTNAG	2 cut(s)	156, 234
DpnI	GATC	3 cut(s)	100, 287, 413
DpnII	GATC	3 cut(s)	98, 285, 411
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	477
Eco147I	AGGCCT	2 cut(s)	161, 232
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	461
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	3 cut(s)	53, 190, 481
FaiI	YATR	8 cut(s)	40, 51, 165, 188, 387, 404, 457, 479
FatI	CATG	3 cut(s)	49, 186, 477
FblI	GTMKAC	1 cut(s)	39
FokI	GGATG	1 cut(s)	346
GlaI	GCGC	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	161, 232, 314
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	3 cut(s)	53, 190, 481
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HinfI	GANTC	5 cut(s)	55, 90, 133, 197, 250
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	2 cut(s)	40, 153
Hpy188I	TCNGA	3 cut(s)	270, 299, 411
Hpy188III	TCNNGA	2 cut(s)	461, 463
Hpy8I	GTNNAC	2 cut(s)	40, 153
HpyAV	CCTTC	2 cut(s)	265, 331
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	471
HpyF3I	CTNAG	2 cut(s)	156, 234
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	3 cut(s)	53, 190, 481
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	3 cut(s)	98, 285, 411
LpnPI	CCDG	6 cut(s)	4, 58, 179, 232, 246, 328
MaeII	ACGT	1 cut(s)	471
MalI	GATC	3 cut(s)	100, 287, 413
MboI	GATC	3 cut(s)	98, 285, 411
MboII	GAAGA	2 cut(s)	139, 295
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	2 cut(s)	276, 300
MlyI	GAGTC	2 cut(s)	191, 259
MnlI	CCTC	6 cut(s)	40, 123, 147, 304, 401, 475
MseI	TTAA	2 cut(s)	120, 279
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	45
MvnI	CGCG	1 cut(s)	416
NciI	CCSGG	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	3 cut(s)	98, 285, 411
NlaIII	CATG	3 cut(s)	53, 190, 481
PaeR7I	CTCGAG	1 cut(s)	461
PceI	AGGCCT	2 cut(s)	161, 232
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	55, 90, 133
Ple19I	CGATCG	1 cut(s)	414
PleI	GAGTC	2 cut(s)	191, 258
PpsI	GAGTC	2 cut(s)	191, 258
PshAI	GACNNNNGTC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	98
PvuI	CGATCG	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	120, 279
Sau3AI	GATC	3 cut(s)	98, 285, 411
SchI	GAGTC	2 cut(s)	191, 259
ScrFI	CCNGG	1 cut(s)	45
SetI	ASST	4 cut(s)	8, 147, 447, 474
SfcI	CTRYAG	2 cut(s)	94, 163
Sfr274I	CTCGAG	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	2 cut(s)	276, 300
SseBI	AGGCCT	2 cut(s)	161, 232
SsiI	CCGC	1 cut(s)	169
StuI	AGGCCT	2 cut(s)	161, 232
StyD4I	CCNGG	1 cut(s)	43
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	474
TaqI	TCGA	4 cut(s)	88, 139, 288, 462
TasI	AATT	2 cut(s)	276, 300
TfiI	GAWTC	3 cut(s)	55, 90, 133
Tru1I	TTAA	2 cut(s)	120, 279
Tru9I	TTAA	2 cut(s)	120, 279
TspDTI	ATGAA	2 cut(s)	140, 350
XhoI	CTCGAG	1 cut(s)	461
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.