Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009546

Physical Location & Seq

Genomic Coordinates Reverse (-)

39628933 .. 39631240

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G027040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGGTTGGAGAAGTGCTGGTTCTGTTCTTCAACTGTATATCCTGGGCACGGTATTCAGTTTGTTCGTAATGATGCAAAGATTTTTCGATTTTGTAGATCTAAATGCCACAAGAACTTCAAAATGAAGAGGAATCCTCGCAAGGTGAAGTGGACGAAGGCCTATAGGCGGTTGCGTGGAAAGGATATGACACAGGATTCAACTTTTGAGTTTGAGAGGAAGAGAAATAGGCCTGAGAGATATGATAGGAATCTTACAGAAAACACTCTCAAGGCCATTAAGAAGATTGATAAGGTTAGAGTCGACAGAGAGGCCAAGCACCATCAGAAGAGGATGAAAAAGGACAAGAGACCCAAGATAAACATAGATGCACAGGAATTGAAACAGAGCCTCAACATGGTCCAAGCTCCTGATGCGCTTCGACAAGATCTGTTGAAAAAAGTCAAGGTCCAAAAGCAAGTGGACCAAACCTATGCAATGGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902626 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L24e

Protein Analysis

162

Amino Acids

19.7

Weight (kDa)

10.29

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L24e	PF01246	1 - 65	1.6e-33	Ribosomal protein L24e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009546)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44860 AT2G44860
fragaria_vesca	FvH4_3g24270
malus_domestica	MD03G1135200.v1.1 MD11G1157900.v1.1
prunus_persica	Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.5G055500_v2.0.a1 Prupe.6G119600_v2.0.a1
pyrus_communis	pycom03g09110 pycom11g12820
rosa_chinensis	RchiOBHm_Chr5g0043411
rosa_laevigata	RLG00000034185
rosa_multiflora	Rmu_sc0000060.1_g000067
rosa_roxburghii	Rroxscaffold_1G00037470
rosa_rugosa	Rorug05G0205700 Rorug05G0205700
rosa_samantha	Rh5AG291500 Rh5BG298100 Rh5CG327600 Rh5DG307500
rosa_wichuraiana	Rw5G027040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	1 cut(s)	169
AfiI	CCNNNNNNNGG	3 cut(s)	50, 168, 397
AgsI	TTSAA	5 cut(s)	33, 121, 201, 382, 436
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
Alw26I	GTCTC	1 cut(s)	343
AoxI	GGCC	4 cut(s)	159, 230, 273, 312
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	3 cut(s)	400, 448, 463
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	3 cut(s)	400, 448, 463
BaeGI	GKGCMC	1 cut(s)	51
BccI	CCATC	1 cut(s)	330
BciT130I	CCWGG	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	343
BfmI	CTRYAG	1 cut(s)	163
BglII	AGATCT	2 cut(s)	98, 427
Bme1390I	CCNGG	1 cut(s)	45
Bme18I	GGWCC	3 cut(s)	400, 448, 463
BmgT120I	GGNCC	3 cut(s)	400, 448, 463
BmrFI	CCNGG	1 cut(s)	45
BmsI	GCATC	3 cut(s)	64, 358, 403
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpuEI	CTTGAG	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 168, 397
Bse3DI	GCAATG	1 cut(s)	483
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	3 cut(s)	50, 168, 397
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	51
BshFI	GGCC	4 cut(s)	161, 232, 275, 314
BslI	CCNNNNNNNGG	3 cut(s)	50, 168, 397
BsmAI	GTCTC	1 cut(s)	343
BsnI	GGCC	4 cut(s)	161, 232, 275, 314
Bso31I	GGTCTC	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	98, 427
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	4 cut(s)	161, 232, 275, 314
BspCNI	CTCAG	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	2 cut(s)	98, 427
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	37, 53
Bst6I	CTCTTC	3 cut(s)	122, 215, 323
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	2 cut(s)	101, 430
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	2 cut(s)	98, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	98, 427
BstYI	RGATCY	2 cut(s)	98, 427
BsuRI	GGCC	4 cut(s)	161, 232, 275, 314
BtsCI	GGATG	1 cut(s)	339
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	400, 448, 463
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	6 cut(s)	161, 232, 275, 314, 390, 407
CviKI_1	RGCY	6 cut(s)	161, 232, 275, 314, 390, 407
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	100, 429
DpnII	GATC	2 cut(s)	98, 427
Eam1104I	CTCTTC	3 cut(s)	122, 215, 323
EarI	CTCTTC	3 cut(s)	122, 215, 323
Eco147I	AGGCCT	2 cut(s)	161, 232
Eco31I	GGTCTC	1 cut(s)	343
Eco47I	GGWCC	3 cut(s)	400, 448, 463
EcoRII	CCWGG	1 cut(s)	43
FaeI	CATG	1 cut(s)	400
FaiI	YATR	7 cut(s)	40, 165, 188, 243, 365, 398, 474
FatI	CATG	1 cut(s)	396
FblI	GTMKAC	1 cut(s)	303
FokI	GGATG	1 cut(s)	346
GlaI	GCGC	1 cut(s)	417
HaeIII	GGCC	4 cut(s)	161, 232, 275, 314
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	4 cut(s)	133, 197, 250, 300
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	3 cut(s)	153, 304, 463
Hpy188I	TCNGA	1 cut(s)	327
Hpy188III	TCNNGA	1 cut(s)	410
Hpy8I	GTNNAC	3 cut(s)	153, 304, 463
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	37, 53
HpyCH4V	TGCA	3 cut(s)	77, 371, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	1 cut(s)	416
Kzo9I	GATC	2 cut(s)	98, 427
LmnI	GCTCC	1 cut(s)	412
LpnPI	CCDG	7 cut(s)	4, 30, 57, 179, 246, 359, 423
LweI	GCATC	3 cut(s)	64, 358, 403
MalI	GATC	2 cut(s)	100, 429
MboI	GATC	2 cut(s)	98, 427
MboII	GAAGA	5 cut(s)	21, 139, 232, 295, 340
MflI	RGATCY	2 cut(s)	98, 427
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	309
MnlI	CCTC	7 cut(s)	123, 147, 210, 304, 324, 401, 475
MseI	TTAA	1 cut(s)	279
MspR9I	CCNGG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	2 cut(s)	98, 427
NlaIII	CATG	1 cut(s)	400
PceI	AGGCCT	2 cut(s)	161, 232
PfeI	GAWTC	3 cut(s)	133, 197, 250
PleI	GAGTC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspPI	GGNCC	3 cut(s)	400, 448, 463
PsuI	RGATCY	2 cut(s)	98, 427
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	98, 427
Sau96I	GGNCC	3 cut(s)	400, 448, 463
SchI	GAGTC	1 cut(s)	309
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	6 cut(s)	8, 147, 297, 409, 450, 473
SfaNI	GCATC	3 cut(s)	64, 358, 403
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	3 cut(s)	400, 448, 463
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	377
SseBI	AGGCCT	2 cut(s)	161, 232
SsiI	CCGC	1 cut(s)	169
StuI	AGGCCT	2 cut(s)	161, 232
StyD4I	CCNGG	1 cut(s)	43
TaaI	ACNGT	2 cut(s)	37, 53
TaqI	TCGA	3 cut(s)	88, 303, 421
TasI	AATT	1 cut(s)	377
TfiI	GAWTC	3 cut(s)	133, 197, 250
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	140, 350
VpaK11BI	GGWCC	3 cut(s)	400, 448, 463
XmiI	GTMKAC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.