Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011285

Physical Location & Seq

Genomic Coordinates Reverse (-)

18586974 .. 18588452

Gene Structure 1479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGTGGGAAGTGGAGCTCCACAGAGAGGAAGTGCAGCTGCAACTGCAAGCATGCGTAGGAGGAAGCCGACCAGCGGTGCTGGTGGAGGAGGTGCCTCTGGTGGTGCAGCCGGATCCATGCTTCAGTTCTACACCGATGACGCACCTGGTCTCAAGATCTCCCCCAATGTTGTTCTTATCATGAGCATCGGTTTCATTGCTTTCGTCGCTGTGCTTCATGTTATGGGCAAGCTCTACTTTGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006620 GO:0006810 GO:0006886 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0019899 GO:0030867 GO:0031090 GO:0031204 GO:0031205 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045048 GO:0045184 GO:0046907 GO:0051020 GO:0051179 GO:0051205 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0061024 GO:0065002 GO:0065007 GO:0065009 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0071816 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098772 GO:0098796 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Sec61_beta

Protein Analysis

82

Amino Acids

8.22

Weight (kDa)

10.62

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	37 - 76	1.6e-18	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45070 AT2G45070 AT2G45070 AT2G45070 AT3G60540 AT3G60540 AT3G60540
fragaria_vesca	FvH4_7g10790 FvH4_7g10790 FvH4_7g10790
malus_domestica	MD07G1113000.v1.1
prunus_persica	Prupe.2G136100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0348731
rosa_multiflora	Rmu_sc0001674.1_g000010 Rmu_sc0006564.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306700
rosa_rugosa	Rorug01G0197500 Rorug01G0197600
rosa_wichuraiana	Rw1G018190 Rw2G039100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	108, 121
AcuI	CTGAAG	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	26, 74
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	3 cut(s)	17, 38, 232
AluI	AGCT	3 cut(s)	17, 38, 232
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	108, 121
ApeKI	GCWGC	3 cut(s)	35, 38, 107
BamHI	GGATCC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	19
BbvI	GCAGC	3 cut(s)	25, 47, 119
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	156
BisI	GCNGC	3 cut(s)	36, 39, 108
BlsI	GCNGC	3 cut(s)	37, 40, 109
Bme1390I	CCNGG	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	94, 115
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	137
BsaI	GGTCTC	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 74
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	26, 74
BseMI	GCAATG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	25, 47, 119
BsgI	GTGCAG	2 cut(s)	54, 126
BshNI	GGYRCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	26, 74
BsmAI	GTCTC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	2 cut(s)	113, 156
BspACI	CCGC	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	94, 115
BspPI	GGATC	2 cut(s)	108, 121
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	195
BssMI	GATC	2 cut(s)	113, 156
Bst2UI	CCWGG	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	49, 53, 230
BstKTI	GATC	2 cut(s)	116, 159
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	113, 156
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 206
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	145
BstV1I	GCAGC	3 cut(s)	25, 47, 119
BstX2I	RGATCY	2 cut(s)	113, 156
BstYI	RGATCY	2 cut(s)	113, 156
Cac8I	GCNNGC	3 cut(s)	49, 53, 230
CciI	TCATGA	1 cut(s)	180
CseI	GACGC	1 cut(s)	149
CsiI	ACCWGGT	1 cut(s)	145
CviAII	CATG	4 cut(s)	52, 118, 181, 218
CviJI	RGCY	5 cut(s)	17, 38, 67, 110, 232
CviKI_1	RGCY	5 cut(s)	17, 38, 67, 110, 232
DpnI	GATC	2 cut(s)	115, 158
DpnII	GATC	2 cut(s)	113, 156
Ecl136II	GAGCTC	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	155
Eco53kI	GAGCTC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	19
FaeI	CATG	4 cut(s)	55, 121, 184, 221
FaiI	YATR	5 cut(s)	53, 119, 182, 219, 224
FalI	AAGNNNNNCTT	1 cut(s)	221
FatI	CATG	4 cut(s)	51, 117, 180, 217
Fnu4HI	GCNGC	3 cut(s)	36, 39, 108
FriOI	GRGCYC	1 cut(s)	19
Fsp4HI	GCNGC	3 cut(s)	36, 39, 108
GluI	GCNGC	3 cut(s)	36, 39, 108
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	149
Hin1II	CATG	4 cut(s)	55, 121, 184, 221
HpaII	CCGG	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	154, 181
Hpy99I	CGWCG	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	35, 41, 47, 107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 206
Hsp92II	CATG	4 cut(s)	55, 121, 184, 221
Kzo9I	GATC	2 cut(s)	113, 156
LmnI	GCTCC	2 cut(s)	14, 22
LpnPI	CCDG	6 cut(s)	66, 84, 85, 124, 132, 159
Lsp1109I	GCAGC	3 cut(s)	25, 47, 119
LweI	GCATC	1 cut(s)	195
MabI	ACCWGGT	1 cut(s)	145
MalI	GATC	2 cut(s)	115, 158
MboI	GATC	2 cut(s)	113, 156
MflI	RGATCY	2 cut(s)	113, 156
MhlI	GDGCHC	1 cut(s)	19
MnlI	CCTC	5 cut(s)	20, 54, 80, 83, 106
MspA1I	CMGCKG	2 cut(s)	38, 75
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	44, 206
NdeII	GATC	2 cut(s)	113, 156
NlaIII	CATG	4 cut(s)	55, 121, 184, 221
NlaIV	GGNNCC	2 cut(s)	94, 115
NspI	RCATGY	1 cut(s)	55
PaeI	GCATGC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	180
PkrI	GCNGC	3 cut(s)	37, 40, 109
Psp124BI	GAGCTC	1 cut(s)	19
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	94, 115
PsuI	RGATCY	2 cut(s)	113, 156
PvuII	CAGCTG	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	19
SatI	GCNGC	3 cut(s)	36, 39, 108
Sau3AI	GATC	2 cut(s)	113, 156
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	5 cut(s)	19, 40, 94, 148, 234
SexAI	ACCWGGT	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SphI	GCATGC	1 cut(s)	55
SsiI	CCGC	1 cut(s)	75
SstI	GAGCTC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	145
TseI	GCWGC	3 cut(s)	35, 38, 107
TspDTI	ATGAA	2 cut(s)	184, 206
XceI	RCATGY	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.