AT3G60540

posttranslational protein targeting to membrane, translocation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011285
Physical Location & Seq
Reverse (-)
22374864 .. 22375916
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60540.3

Sequence Viewer

Length: 246 bp
ATGGTTGGTGGTGGAGCTCCACAGAGAGGAAGTGCAGCTGCAACTGCAAGCATGAGGAGGAGGAAGCCTGCTGGTGGCAGCAGCAGCGCCGGTGGTGGAGCTGGAACAATGCTTCAGTTCTACACAGACGACGCGCCTGGTCTCAAGATATCTCCAAATGTTGTTCTTATCATGAGCATTGGTTTCATTGCTTTTGTAGCTGTTCTTCATGTCATGGGTAAGCTCTATTTTGTCAAGAGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0003674 GO:0005085 GO:0005086 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005784 GO:0005789 GO:0005791 GO:0005829 GO:0006508 GO:0006511 GO:0006605 GO:0006606 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0008152 GO:0008320 GO:0008565 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010506 GO:0010507 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019222 GO:0019538 GO:0019838 GO:0019899 GO:0019941 GO:0022804 GO:0022857 GO:0022884 GO:0030163 GO:0030433 GO:0030867 GO:0030970 GO:0031090 GO:0031204 GO:0031205 GO:0031224 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031984 GO:0032527 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0042562 GO:0042886 GO:0042887 GO:0043021 GO:0043022 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045048 GO:0045184 GO:0046907 GO:0048408 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051169 GO:0051170 GO:0051179 GO:0051205 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0061024 GO:0065002 GO:0065007 GO:0065009 GO:0070727 GO:0070972 GO:0071256 GO:0071261 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071816 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098772 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513 GO:1904680
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

81

Amino Acids

8.22

Weight (kDa)

10.69

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 34 - 73 1.4e-18 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 26, 74
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 5 cut(s) 17, 38, 101, 200, 223
AluI AGCT 5 cut(s) 17, 38, 101, 200, 223
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 146
ApeKI GCWGC 5 cut(s) 35, 38, 78, 81, 84
AspLEI GCGC 2 cut(s) 89, 136
BanII GRGCYC 1 cut(s) 19
BarI GAAGNNNNNNTAC 2 cut(s) 189, 221
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 5 cut(s) 25, 47, 90, 93, 96
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 146
BfoI RGCGCY 1 cut(s) 90
BisI GCNGC 5 cut(s) 36, 39, 79, 82, 85
BlsI GCNGC 5 cut(s) 37, 40, 80, 83, 86
Bme1390I CCNGG 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 146
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 74
Bse118I RCCGGY 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 26, 74
BseMI GCAATG 1 cut(s) 186
BseRI GAGGAG 2 cut(s) 70, 73
BseXI GCAGC 5 cut(s) 25, 47, 90, 93, 96
BsgI GTGCAG 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 2 cut(s) 26, 74
BsmAI GTCTC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 19
BspFNI CGCG 1 cut(s) 134
BspHI TCATGA 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 49, 69
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 89, 136
BstMAI GTCTC 1 cut(s) 146
BstMWI GCNNNNNNNGC 3 cut(s) 44, 84, 197
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 5 cut(s) 25, 47, 90, 93, 96
Cac8I GCNNGC 2 cut(s) 49, 69
CciI TCATGA 1 cut(s) 171
CfoI GCGC 2 cut(s) 89, 136
Cfr10I RCCGGY 1 cut(s) 89
CseI GACGC 1 cut(s) 140
CviAII CATG 4 cut(s) 52, 172, 209, 214
CviJI RGCY 6 cut(s) 17, 38, 67, 101, 200, 223
CviKI_1 RGCY 6 cut(s) 17, 38, 67, 101, 200, 223
Ecl136II GAGCTC 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 19
Eco31I GGTCTC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 136
EcoRV GATATC 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 19
FaeI CATG 4 cut(s) 55, 175, 212, 217
FaiI YATR 4 cut(s) 53, 173, 210, 215
FatI CATG 4 cut(s) 51, 171, 208, 213
Fnu4HI GCNGC 5 cut(s) 36, 39, 79, 82, 85
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 5 cut(s) 36, 39, 79, 82, 85
GlaI GCGC 2 cut(s) 88, 135
GluI GCNGC 5 cut(s) 36, 39, 79, 82, 85
HaeII RGCGCY 1 cut(s) 90
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 140
HhaI GCGC 2 cut(s) 89, 136
Hin1II CATG 4 cut(s) 55, 175, 212, 217
Hin6I GCGC 2 cut(s) 87, 134
HinP1I GCGC 2 cut(s) 87, 134
HpaII CCGG 1 cut(s) 90
Hpy188III TCNNGA 3 cut(s) 145, 172, 235
Hpy99I CGWCG 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 35, 41, 47
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 84, 197
Hsp92II CATG 4 cut(s) 55, 175, 212, 217
HspAI GCGC 2 cut(s) 87, 134
LmnI GCTCC 3 cut(s) 14, 22, 98
LpnPI CCDG 6 cut(s) 57, 81, 87, 103, 123, 150
Lsp1109I GCAGC 5 cut(s) 25, 47, 90, 93, 96
MboII GAAGA 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 19
MnlI CCTC 4 cut(s) 20, 48, 51, 54
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 44, 84, 197
NlaIII CATG 4 cut(s) 55, 175, 212, 217
PagI TCATGA 1 cut(s) 171
PkrI GCNGC 5 cut(s) 37, 40, 80, 83, 86
Psp124BI GAGCTC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 38
SacI GAGCTC 1 cut(s) 19
SatI GCNGC 5 cut(s) 36, 39, 79, 82, 85
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 19
SetI ASST 5 cut(s) 19, 40, 103, 202, 225
SgrAI CRCCGGYG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SstI GAGCTC 1 cut(s) 19
StyD4I CCNGG 1 cut(s) 136
TseI GCWGC 5 cut(s) 35, 38, 78, 81, 84
TspDTI ATGAA 2 cut(s) 175, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.