Rw2G039100

Necessary for protein translocation in the endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011285
Physical Location & Seq
Reverse (-)
64072499 .. 64072759
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039100.1

Sequence Viewer

Length: 225 bp
ATGGTTCTAGCCAGTGGAGCAGCAGCAGCAGCTCCCCCAACAGGAAGTGCTGCTGCTGCTGCAAGCATGCGTGCAGCCGGGACTATGCTCCAGTCCTACTCTGATGATGTTCCAGGACTTAAGATCTCCCCAAATGTTGTTTTCATCATGACCATTGGTTTCATTGCCTTTATTGCTGTTCTTCATGCTATGGGAAAGCTCTACTTTGTGCGCAGAGAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

74

Amino Acids

7.54

Weight (kDa)

9.52

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 26 - 65 4.9e-13 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 41
AflII CTTAAG 1 cut(s) 119
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 2 cut(s) 32, 199
AluI AGCT 2 cut(s) 32, 199
ApeKI GCWGC 9 cut(s) 20, 23, 26, 29, 50, 53, 56, 59, 74
AspLEI GCGC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 79
BbvI GCAGC 9 cut(s) 32, 35, 37, 38, 40, 41, 43, 46, 86
BciT130I CCWGG 1 cut(s) 114
BcnI CCSGG 1 cut(s) 79
BfaI CTAG 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 119
BglII AGATCT 1 cut(s) 123
BisI GCNGC 9 cut(s) 21, 24, 27, 30, 51, 54, 57, 60, 75
BlsI GCNGC 9 cut(s) 22, 25, 28, 31, 52, 55, 58, 61, 76
Bme1390I CCNGG 2 cut(s) 79, 114
BmrFI CCNGG 2 cut(s) 79, 114
BpmI CTGGAG 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 41
Bse1I ACTGG 2 cut(s) 12, 91
Bse3DI GCAATG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 2 cut(s) 12, 91
BseXI GCAGC 9 cut(s) 32, 35, 37, 38, 40, 41, 43, 46, 86
BsgI GTGCAG 1 cut(s) 93
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 94
Bsp143I GATC 1 cut(s) 123
BspHI TCATGA 1 cut(s) 147
BspTI CTTAAG 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 2 cut(s) 12, 91
BssMI GATC 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 114
BstAFI CTTAAG 1 cut(s) 119
BstC8I GCNNGC 3 cut(s) 64, 68, 72
BstDEI CTNAG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 1 cut(s) 126
BstMBI GATC 1 cut(s) 123
BstMWI GCNNNNNNNGC 6 cut(s) 17, 26, 29, 56, 59, 173
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 2 cut(s) 77, 112
BstV1I GCAGC 9 cut(s) 32, 35, 37, 38, 40, 41, 43, 46, 86
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 3 cut(s) 64, 68, 72
CciI TCATGA 1 cut(s) 147
CfoI GCGC 1 cut(s) 213
CviAII CATG 3 cut(s) 67, 148, 185
CviJI RGCY 5 cut(s) 11, 32, 77, 199, 221
CviKI_1 RGCY 5 cut(s) 11, 32, 77, 199, 221
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 125
DpnII GATC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 112
FaeI CATG 3 cut(s) 70, 151, 188
FaiI YATR 5 cut(s) 68, 86, 149, 186, 191
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 1 cut(s) 94
FatI CATG 3 cut(s) 66, 147, 184
Fnu4HI GCNGC 9 cut(s) 21, 24, 27, 30, 51, 54, 57, 60, 75
Fsp4HI GCNGC 9 cut(s) 21, 24, 27, 30, 51, 54, 57, 60, 75
FspBI CTAG 1 cut(s) 8
FspI TGCGCA 1 cut(s) 212
GlaI GCGC 1 cut(s) 212
GluI GCNGC 9 cut(s) 21, 24, 27, 30, 51, 54, 57, 60, 75
GsuI CTGGAG 1 cut(s) 74
HapII CCGG 1 cut(s) 78
HhaI GCGC 1 cut(s) 213
Hin1II CATG 3 cut(s) 70, 151, 188
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HpaII CCGG 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 62, 74
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 26, 29, 56, 59, 173
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 3 cut(s) 70, 151, 188
HspAI GCGC 1 cut(s) 211
Kzo9I GATC 1 cut(s) 123
LmnI GCTCC 3 cut(s) 17, 37, 93
LpnPI CCDG 6 cut(s) 25, 27, 91, 99, 104, 126
Lsp1109I GCAGC 9 cut(s) 32, 35, 37, 38, 40, 41, 43, 46, 86
MaeI CTAG 1 cut(s) 8
MalI GATC 1 cut(s) 125
MboI GATC 1 cut(s) 123
MboII GAAGA 1 cut(s) 173
MflI RGATCY 1 cut(s) 123
MnlI CCTC 1 cut(s) 211
MseI TTAA 1 cut(s) 120
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 79, 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 6 cut(s) 17, 26, 29, 56, 59, 173
NciI CCSGG 1 cut(s) 79
NdeII GATC 1 cut(s) 123
NlaIII CATG 3 cut(s) 70, 151, 188
NsbI TGCGCA 1 cut(s) 212
NspI RCATGY 1 cut(s) 70
PaeI GCATGC 1 cut(s) 70
PagI TCATGA 1 cut(s) 147
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 9 cut(s) 22, 25, 28, 31, 52, 55, 58, 61, 76
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 123
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 9 cut(s) 21, 24, 27, 30, 51, 54, 57, 60, 75
Sau3AI GATC 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 79, 114
SetI ASST 2 cut(s) 34, 201
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SphI GCATGC 1 cut(s) 70
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 77, 112
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 19
TseI GCWGC 9 cut(s) 20, 23, 26, 29, 50, 53, 56, 59, 74
TspDTI ATGAA 3 cut(s) 133, 151, 173
TspRI CASTG 1 cut(s) 19
Vha464I CTTAAG 1 cut(s) 119
XceI RCATGY 1 cut(s) 70
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.