MD07G1113000.v1.1

Necessary for protein translocation in the endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0011285
Physical Location & Seq
Reverse (-)
13261995 .. 13264653
2659 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1113000.v1.1.491

Sequence Viewer

Length: 180 bp
ATGAGGAGAAGGAAGACGACAAGTGGTGGTGCTTCAGGAGGTGCAGCAGGGACTATGCTCCAGTTTTACACAGATGATGCCCCGGGACTCAAGATCTCCCCGAATGTTGTCCTCATCATGAGCATTGGTTTCATCGCCTTTGTTGCCGTTCTTCATGTCATGGCTTTGATGGGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

60

Amino Acids

6.1

Weight (kDa)

10.27

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 16 - 55 7.7e-19 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 18
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 82
ApeKI GCWGC 1 cut(s) 44
AsuC2I CCSGG 2 cut(s) 83, 84
AvaI CYCGRG 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 131
BcnI CCSGG 2 cut(s) 83, 84
BglII AGATCT 1 cut(s) 93
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 2 cut(s) 83, 84
BmeT110I CYCGRG 1 cut(s) 82
BmrFI CCNGG 2 cut(s) 83, 84
BmsI GCATC 1 cut(s) 67
BpiI GAAGAC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 44
BpuEI CTTGAG 1 cut(s) 74
BpuMI CCSGG 2 cut(s) 83, 84
BsaJI CCNNGG 2 cut(s) 81, 82
Bse1I ACTGG 1 cut(s) 61
BseDI CCNNGG 2 cut(s) 81, 82
BseNI ACTGG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 82
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 2 cut(s) 64, 99
BsmFI GGGAC 2 cut(s) 64, 99
BsoBI CYCGRG 1 cut(s) 82
Bsp143I GATC 1 cut(s) 93
BspHI TCATGA 1 cut(s) 117
BsrI ACTGG 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 81, 82
BssMI GATC 1 cut(s) 93
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSCI CCNGG 2 cut(s) 81, 82
BstV1I GCAGC 1 cut(s) 56
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 118
CciI TCATGA 1 cut(s) 117
Cfr9I CCCGGG 1 cut(s) 82
CviAII CATG 3 cut(s) 118, 155, 160
CviJI RGCY 2 cut(s) 164, 176
CviKI_1 RGCY 2 cut(s) 164, 176
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 82
FaeI CATG 3 cut(s) 121, 158, 163
FaiI YATR 4 cut(s) 56, 119, 156, 161
FaqI GGGAC 2 cut(s) 64, 99
FatI CATG 3 cut(s) 117, 154, 159
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 44
HapII CCGG 1 cut(s) 83
Hin1II CATG 3 cut(s) 121, 158, 163
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 83
Hpy188III TCNNGA 3 cut(s) 36, 91, 118
HpyAV CCTTC 1 cut(s) 3
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
Hsp92II CATG 3 cut(s) 121, 158, 163
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 63, 173
LpnPI CCDG 4 cut(s) 21, 33, 74, 96
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 67
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 2 cut(s) 25, 143
MflI RGATCY 1 cut(s) 93
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 2 cut(s) 32, 122
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 83, 84
MwoI GCNNNNNNNGC 1 cut(s) 143
NciI CCSGG 2 cut(s) 83, 84
NdeII GATC 1 cut(s) 93
NlaIII CATG 3 cut(s) 121, 158, 163
PagI TCATGA 1 cut(s) 117
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PsuI RGATCY 1 cut(s) 93
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 93
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 2 cut(s) 83, 84
SetI ASST 2 cut(s) 43, 178
SfaNI GCATC 1 cut(s) 67
SmaI CCCGGG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 81, 82
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 121, 143
TspMI CCCGGG 1 cut(s) 82
XmaI CCCGGG 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.