Rmu_sc0001674.1_g000010

posttranslational protein targeting to membrane, translocation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001674.1
OG0011285
Physical Location & Seq
Reverse (-)
57061 .. 57312
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001674.1_g000010.1.cds

Sequence Viewer

Length: 252 bp
atggttctaggcggtggagcagctcccccaagaggaagtgccgcagctactgcgagcatgcgccgaaggaggacgacgagtggtggcggttcttctggaggtgcagccgggacaatgctccagttctacactgacgacgccccaggactcaagatctccccgaatgttgttctcatcatgagcattggtttcattgcctttgttgctgttcttcatgtcatgggaaagctctactttgtgcgctctgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0003674 GO:0005085 GO:0005086 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005784 GO:0005789 GO:0005791 GO:0005829 GO:0006508 GO:0006511 GO:0006605 GO:0006606 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0008152 GO:0008320 GO:0008565 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010506 GO:0010507 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019222 GO:0019538 GO:0019838 GO:0019899 GO:0019941 GO:0022804 GO:0022857 GO:0022884 GO:0030163 GO:0030433 GO:0030867 GO:0030970 GO:0031090 GO:0031204 GO:0031205 GO:0031224 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031984 GO:0032527 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0042562 GO:0042886 GO:0042887 GO:0043021 GO:0043022 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045048 GO:0045184 GO:0046907 GO:0048408 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051169 GO:0051170 GO:0051179 GO:0051205 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0061024 GO:0065002 GO:0065007 GO:0065009 GO:0070727 GO:0070972 GO:0071256 GO:0071261 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071816 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098772 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513 GO:1904680
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

83

Amino Acids

8.4

Weight (kDa)

11.38

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 12, 42, 87
AcyI GRCGYC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 32
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 3 cut(s) 23, 47, 229
AluI AGCT 3 cut(s) 23, 47, 229
AlwNI CAGNNNCTG 1 cut(s) 50
ApeKI GCWGC 3 cut(s) 20, 44, 104
AspLEI GCGC 2 cut(s) 63, 243
AsuC2I CCSGG 1 cut(s) 109
BbvI GCAGC 3 cut(s) 32, 56, 116
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 109
BfaI CTAG 1 cut(s) 8
BglII AGATCT 1 cut(s) 153
BisI GCNGC 4 cut(s) 21, 42, 45, 105
BlsI GCNGC 4 cut(s) 22, 43, 46, 106
Bme1390I CCNGG 2 cut(s) 109, 144
BmrFI CCNGG 2 cut(s) 109, 144
BpmI CTGGAG 2 cut(s) 104, 117
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 109
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 32, 56, 116
BsgI GTGCAG 1 cut(s) 123
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 3 cut(s) 12, 42, 87
BspHI TCATGA 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 1 cut(s) 144
BstACI GRCGYC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 55, 59
BstDEI CTNAG 1 cut(s) 249
BstHHI GCGC 2 cut(s) 63, 243
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 50, 203
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 107, 142
BstV1I GCAGC 3 cut(s) 32, 56, 116
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 55, 59
CaiI CAGNNNCTG 1 cut(s) 50
CciI TCATGA 1 cut(s) 177
CfoI GCGC 2 cut(s) 63, 243
CseI GACGC 1 cut(s) 146
CviAII CATG 4 cut(s) 58, 178, 215, 220
CviJI RGCY 4 cut(s) 23, 47, 107, 229
CviKI_1 RGCY 4 cut(s) 23, 47, 107, 229
DdeI CTNAG 1 cut(s) 249
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 4 cut(s) 61, 181, 218, 223
FaiI YATR 4 cut(s) 59, 179, 216, 221
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 124
FatI CATG 4 cut(s) 57, 177, 214, 219
Fnu4HI GCNGC 4 cut(s) 21, 42, 45, 105
Fsp4HI GCNGC 4 cut(s) 21, 42, 45, 105
FspBI CTAG 1 cut(s) 8
GlaI GCGC 2 cut(s) 62, 242
GluI GCNGC 4 cut(s) 21, 42, 45, 105
GsuI CTGGAG 2 cut(s) 104, 117
HapII CCGG 1 cut(s) 108
HgaI GACGC 1 cut(s) 146
HhaI GCGC 2 cut(s) 63, 243
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 4 cut(s) 61, 181, 218, 223
Hin6I GCGC 2 cut(s) 61, 241
HinP1I GCGC 2 cut(s) 61, 241
HinfI GANTC 1 cut(s) 147
HpaII CCGG 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 96, 151, 178
Hpy99I CGWCG 2 cut(s) 79, 140
HpyAV CCTTC 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 203
HpyF3I CTNAG 1 cut(s) 249
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 4 cut(s) 61, 181, 218, 223
HspAI GCGC 2 cut(s) 61, 241
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 3 cut(s) 17, 28, 123
LpnPI CCDG 5 cut(s) 81, 121, 129, 134, 156
Lsp1109I GCAGC 3 cut(s) 32, 56, 116
MaeI CTAG 1 cut(s) 8
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 2 cut(s) 84, 203
MflI RGATCY 1 cut(s) 153
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 3 cut(s) 26, 63, 92
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 109, 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 50, 203
NciI CCSGG 1 cut(s) 109
NdeII GATC 1 cut(s) 153
NlaIII CATG 4 cut(s) 61, 181, 218, 223
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 1 cut(s) 177
PkrI GCNGC 4 cut(s) 22, 43, 46, 106
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 153
SatI GCNGC 4 cut(s) 21, 42, 45, 105
Sau3AI GATC 1 cut(s) 153
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 2 cut(s) 109, 144
SetI ASST 4 cut(s) 25, 49, 103, 231
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SphI GCATGC 1 cut(s) 61
SsiI CCGC 3 cut(s) 12, 42, 87
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 107, 142
TauI GCSGC 1 cut(s) 44
TscAI CASTG 1 cut(s) 136
TseI GCWGC 3 cut(s) 20, 44, 104
TspDTI ATGAA 2 cut(s) 181, 203
TspRI CASTG 1 cut(s) 136
XceI RCATGY 1 cut(s) 61
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.