Rroxscaffold_4G00306700

posttranslational protein targeting to membrane, translocation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0011285
Physical Location & Seq
Forward (+)
27666744 .. 27666995
252 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00306700.1

Sequence Viewer

Length: 252 bp
ATGGTTCTAGGCGGTGGAGCAGCTCCCCCAAGAGGAAGTGCCGCAGCTACTGCTAGCATGCGCCGAAGGAGAACGACGAGTGGTGGCAGTGCTTCTGGAGGTGCAGCCGGGACAATGCTCCAGTTCTACACTGACGATGCCCCAGGACTCAAGATCTCCCCGAATGTTGTTCTCATCATGAGCATTGGTTTCATTGCCTTTGTTGCTGTTCTTCATGTCATGGGAAAGCTCTACTTTGTGCGCTCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000060 GO:0003674 GO:0005085 GO:0005086 GO:0005215 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005784 GO:0005789 GO:0005791 GO:0005829 GO:0006508 GO:0006511 GO:0006605 GO:0006606 GO:0006612 GO:0006613 GO:0006614 GO:0006616 GO:0006620 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0008152 GO:0008320 GO:0008565 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010243 GO:0010256 GO:0010498 GO:0010506 GO:0010507 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019222 GO:0019538 GO:0019838 GO:0019899 GO:0019941 GO:0022804 GO:0022857 GO:0022884 GO:0030163 GO:0030433 GO:0030867 GO:0030970 GO:0031090 GO:0031204 GO:0031205 GO:0031224 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031984 GO:0032527 GO:0032991 GO:0033036 GO:0033365 GO:0033554 GO:0034504 GO:0034613 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0042562 GO:0042886 GO:0042887 GO:0043021 GO:0043022 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044322 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045048 GO:0045184 GO:0046907 GO:0048408 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051169 GO:0051170 GO:0051179 GO:0051205 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0055085 GO:0061024 GO:0065002 GO:0065007 GO:0065009 GO:0070727 GO:0070972 GO:0071256 GO:0071261 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071816 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0098588 GO:0098772 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1903513 GO:1904680
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Sec61_beta

Protein Analysis

83

Amino Acids

8.42

Weight (kDa)

11.38

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec61_beta PF03911 36 - 75 1.8e-18 Sec61beta family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 12, 42
AfiI CCNNNNNNNGG 1 cut(s) 32
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 3 cut(s) 23, 47, 229
AluI AGCT 3 cut(s) 23, 47, 229
AlwNI CAGNNNCTG 1 cut(s) 50
ApeKI GCWGC 3 cut(s) 20, 44, 104
AspLEI GCGC 2 cut(s) 63, 243
AsuC2I CCSGG 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 53
BbvI GCAGC 3 cut(s) 32, 56, 116
BciT130I CCWGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 109
BfaI CTAG 2 cut(s) 8, 54
BglII AGATCT 1 cut(s) 153
BisI GCNGC 4 cut(s) 21, 42, 45, 105
BlsI GCNGC 4 cut(s) 22, 43, 46, 106
Bme1390I CCNGG 2 cut(s) 109, 144
BmrFI CCNGG 2 cut(s) 109, 144
BmsI GCATC 1 cut(s) 127
BmtI GCTAGC 1 cut(s) 57
BpmI CTGGAG 2 cut(s) 104, 117
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 3 cut(s) 32, 56, 116
BsgI GTGCAG 1 cut(s) 123
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 2 cut(s) 12, 42
BspHI TCATGA 1 cut(s) 177
BspOI GCTAGC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 55, 59
BstDEI CTNAG 1 cut(s) 249
BstHHI GCGC 2 cut(s) 63, 243
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 50, 203
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 61
BstSCI CCNGG 2 cut(s) 107, 142
BstV1I GCAGC 3 cut(s) 32, 56, 116
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 94, 129
Cac8I GCNNGC 2 cut(s) 55, 59
CaiI CAGNNNCTG 1 cut(s) 50
CciI TCATGA 1 cut(s) 177
CfoI GCGC 2 cut(s) 63, 243
CviAII CATG 4 cut(s) 58, 178, 215, 220
CviJI RGCY 4 cut(s) 23, 47, 107, 229
CviKI_1 RGCY 4 cut(s) 23, 47, 107, 229
DdeI CTNAG 1 cut(s) 249
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 4 cut(s) 61, 181, 218, 223
FaiI YATR 4 cut(s) 59, 179, 216, 221
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 124
FatI CATG 4 cut(s) 57, 177, 214, 219
Fnu4HI GCNGC 4 cut(s) 21, 42, 45, 105
Fsp4HI GCNGC 4 cut(s) 21, 42, 45, 105
FspBI CTAG 2 cut(s) 8, 54
GlaI GCGC 2 cut(s) 62, 242
GluI GCNGC 4 cut(s) 21, 42, 45, 105
GsuI CTGGAG 2 cut(s) 104, 117
HapII CCGG 1 cut(s) 108
HhaI GCGC 2 cut(s) 63, 243
Hin1II CATG 4 cut(s) 61, 181, 218, 223
Hin6I GCGC 2 cut(s) 61, 241
HinP1I GCGC 2 cut(s) 61, 241
HinfI GANTC 1 cut(s) 147
HpaII CCGG 1 cut(s) 108
Hpy188III TCNNGA 3 cut(s) 96, 151, 178
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 203
HpyF3I CTNAG 1 cut(s) 249
Hsp92II CATG 4 cut(s) 61, 181, 218, 223
HspAI GCGC 2 cut(s) 61, 241
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 3 cut(s) 17, 28, 123
LpnPI CCDG 5 cut(s) 81, 121, 129, 134, 156
Lsp1109I GCAGC 3 cut(s) 32, 56, 116
LweI GCATC 1 cut(s) 127
MaeI CTAG 2 cut(s) 8, 54
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 1 cut(s) 203
MflI RGATCY 1 cut(s) 153
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 2 cut(s) 26, 92
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 109, 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 2 cut(s) 50, 203
NciI CCSGG 1 cut(s) 109
NdeII GATC 1 cut(s) 153
NheI GCTAGC 1 cut(s) 53
NlaIII CATG 4 cut(s) 61, 181, 218, 223
NspI RCATGY 1 cut(s) 61
PaeI GCATGC 1 cut(s) 61
PagI TCATGA 1 cut(s) 177
PkrI GCNGC 4 cut(s) 22, 43, 46, 106
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 153
SatI GCNGC 4 cut(s) 21, 42, 45, 105
Sau3AI GATC 1 cut(s) 153
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 2 cut(s) 109, 144
SetI ASST 4 cut(s) 25, 49, 103, 231
SfaNI GCATC 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SphI GCATGC 1 cut(s) 61
SsiI CCGC 2 cut(s) 12, 42
SspMI CTAG 2 cut(s) 8, 54
StyD4I CCNGG 2 cut(s) 107, 142
TauI GCSGC 1 cut(s) 44
TscAI CASTG 2 cut(s) 94, 136
TseI GCWGC 3 cut(s) 20, 44, 104
TspDTI ATGAA 2 cut(s) 181, 203
TspRI CASTG 2 cut(s) 94, 136
XceI RCATGY 1 cut(s) 61
XspI CTAG 2 cut(s) 8, 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.