AT2G45410

lob domain-containing protein 19

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016115
Physical Location & Seq
Reverse (-)
18712220 .. 18713211
992 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45410.1

Sequence Viewer

Length: 576 bp
ATGATGACCGGAAACTTGAACGGCGGTGGAAGAGGAGGAGAAGGACCATGCGGGGCTTGCAAGTTCTTGAGAAGAAAGTGTGTGAAAGGGTGCGTTTTCGCTCCTTATTTCGATGCAGAGCAAGGAACTGCGAGATTTGCAGCAGTTCACAAAGTATTTGGGGCCAGCAATGCCTCTAAGATGTTACTGAGATTGCCTCTGCACAAGAGACTTGATGCAGTCGTCACGCTCTGTTACGAGGCCATGGCAAGGATTCGTGATCCTGTCTATGGCTCTGTTGGCCATCTCTTCTCTCTTCAACACCAGGTGATGAATCTACAAGCAGAGCTTGCTCATGTTCAAGCTCGTCTTTCAACAATTCAGCGGTTTCCTCTACAGTCGCCACAACAAATGCAGCCACCGTCTTTTGATCCTGCGCATAACAATGAATATGCGATGGAACCGAGTAACTTGGATAGTGTGTGGGGGGAAGAACATTTACTTCAAGATGGAACTGGAGATGGGGATTTCCAAGAACTGGCGTCGCAGTTCGTCTCAAGGTATTTACCGGCGGTCAAACTTCCGGCTTGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

191

Amino Acids

20.98

Weight (kDa)

7.67

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 16 - 114 5.3e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45410
fragaria_vesca FvH4_7g11980
malus_domestica MD02G1203000.v1.1
prunus_persica Prupe.2G146500_v2.0.a1
pyrus_communis pycom02g16590
rosa_chinensis RchiOBHm_Chr1g0350701
rosa_laevigata RLG00000028462
rosa_multiflora Rmu_sc0002150.1_g000004
rosa_roxburghii Rroxscaffold_4G00304590
rosa_rugosa Rorug01G0213200
rosa_samantha Rh1AG227500 Rh1BG197000 Rh1CG212400 Rh1DG224900
rosa_wichuraiana Rw1G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 417
AccB7I CCANNNNNTGG 1 cut(s) 517
AciI CCGC 4 cut(s) 24, 51, 364, 551
AclWI GGATC 2 cut(s) 254, 404
AcoI YGGCCR 1 cut(s) 280
AcyI GRCGYC 1 cut(s) 521
AdeI CACNNNGTG 1 cut(s) 307
AfiI CCNNNNNNNGG 3 cut(s) 249, 269, 517
AgsI TTSAA 5 cut(s) 19, 299, 341, 354, 485
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 2 cut(s) 328, 344
AluI AGCT 2 cut(s) 328, 344
Alw26I GTCTC 2 cut(s) 202, 538
AlwI GGATC 2 cut(s) 254, 404
AoxI GGCC 3 cut(s) 162, 240, 280
ApeKI GCWGC 2 cut(s) 140, 394
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 2 cut(s) 44, 162
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 44
BalI TGGCCA 1 cut(s) 282
BarI GAAGNNNNNNTAC 2 cut(s) 462, 494
BbvI GCAGC 2 cut(s) 152, 406
BccI CCATC 4 cut(s) 291, 430, 482, 494
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 202, 538
BfmI CTRYAG 1 cut(s) 374
BisI GCNGC 2 cut(s) 141, 395
BlsI GCNGC 2 cut(s) 142, 396
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 2 cut(s) 44, 162
BmiI GGNNCC 2 cut(s) 163, 441
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 103, 205
BplI GAGNNNNNCTC 2 cut(s) 181, 213
BpmI CTGGAG 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 88, 520
BsaHI GRCGYC 1 cut(s) 521
BsaJI CCNNGG 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 269, 517
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 2 cut(s) 499, 522
Bse3DI GCAATG 1 cut(s) 175
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 1 cut(s) 243
BseLI CCNNNNNNNGG 3 cut(s) 249, 269, 517
BseMI GCAATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 2 cut(s) 499, 522
BseRI GAGGAG 2 cut(s) 48, 51
BseXI GCAGC 2 cut(s) 152, 406
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 3 cut(s) 164, 242, 282
BsiSI CCGG 3 cut(s) 9, 548, 563
BslI CCNNNNNNNGG 3 cut(s) 249, 269, 517
BsmAI GTCTC 2 cut(s) 202, 538
BsmBI CGTCTC 1 cut(s) 538
BsnI GGCC 3 cut(s) 164, 242, 282
Bsp143I GATC 2 cut(s) 259, 409
Bsp19I CCATGG 1 cut(s) 243
BspACI CCGC 4 cut(s) 24, 51, 364, 551
BspANI GGCC 3 cut(s) 164, 242, 282
BspCNI CTCAG 1 cut(s) 180
BspLI GGNNCC 2 cut(s) 163, 441
BspPI GGATC 2 cut(s) 254, 404
BsrDI GCAATG 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 2 cut(s) 499, 522
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 2 cut(s) 259, 409
BssNI GRCGYC 1 cut(s) 521
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 378, 402
Bst6I CTCTTC 3 cut(s) 25, 293, 300
BstACI GRCGYC 1 cut(s) 521
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 4 cut(s) 58, 166, 330, 568
BstDEI CTNAG 3 cut(s) 177, 188, 573
BstDSI CCRYGG 1 cut(s) 243
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 2 cut(s) 262, 412
BstMAI GTCTC 2 cut(s) 202, 538
BstMBI GATC 2 cut(s) 259, 409
BstMWI GCNNNNNNNGC 5 cut(s) 57, 137, 170, 279, 329
BstNI CCWGG 1 cut(s) 305
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 374
BstV1I GCAGC 2 cut(s) 152, 406
BsuRI GGCC 3 cut(s) 164, 242, 282
BtgI CCRYGG 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 449
Cac8I GCNNGC 4 cut(s) 58, 166, 330, 568
CfoI GCGC 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 2 cut(s) 44, 162
CseI GACGC 1 cut(s) 510
CsiI ACCWGGT 1 cut(s) 303
CviAII CATG 3 cut(s) 48, 244, 335
CviJI RGCY 9 cut(s) 56, 164, 242, 273, 282, 328, 344, 397, 566
CviKI_1 RGCY 9 cut(s) 56, 164, 242, 273, 282, 328, 344, 397, 566
DdeI CTNAG 3 cut(s) 177, 188, 573
DpnI GATC 2 cut(s) 261, 411
DpnII GATC 2 cut(s) 259, 409
DraIII CACNNNGTG 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 3 cut(s) 25, 293, 300
EarI CTCTTC 3 cut(s) 25, 293, 300
Eco130I CCWWGG 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 538
FaeI CATG 3 cut(s) 51, 247, 338
FaiI YATR 6 cut(s) 49, 245, 270, 336, 420, 432
FalI AAGNNNNNCTT 4 cut(s) 312, 344, 333, 365
FatI CATG 3 cut(s) 47, 243, 334
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 141, 395
Fsp4HI GCNGC 2 cut(s) 141, 395
FspI TGCGCA 1 cut(s) 417
GlaI GCGC 1 cut(s) 417
GluI GCNGC 2 cut(s) 141, 395
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 3 cut(s) 164, 242, 282
HapII CCGG 3 cut(s) 9, 548, 563
HgaI GACGC 1 cut(s) 510
HhaI GCGC 1 cut(s) 418
Hin1I GRCGYC 1 cut(s) 521
Hin1II CATG 3 cut(s) 51, 247, 338
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HinfI GANTC 2 cut(s) 253, 313
HpaII CCGG 3 cut(s) 9, 548, 563
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 1 cut(s) 148
Hpy188III TCNNGA 3 cut(s) 67, 257, 485
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 2 cut(s) 378, 402
HpyCH4V TGCA 7 cut(s) 60, 116, 140, 202, 218, 394, 570
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 137, 170, 279, 329
HpyF3I CTNAG 3 cut(s) 177, 188, 573
Hsp92I GRCGYC 1 cut(s) 521
Hsp92II CATG 3 cut(s) 51, 247, 338
HspAI GCGC 1 cut(s) 416
Kzo9I GATC 2 cut(s) 259, 409
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 9 cut(s) 22, 178, 276, 290, 317, 426, 480, 503, 561
Lsp1109I GCAGC 2 cut(s) 152, 406
LweI GCATC 2 cut(s) 103, 205
MabI ACCWGGT 1 cut(s) 303
MaeIII GTNAC 4 cut(s) 183, 223, 233, 446
MalI GATC 2 cut(s) 261, 411
MboI GATC 2 cut(s) 259, 409
MboII GAAGA 5 cut(s) 42, 84, 280, 287, 482
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 1 cut(s) 357
MluNI TGGCCA 1 cut(s) 282
MnlI CCTC 6 cut(s) 26, 29, 184, 207, 232, 381
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 364
MspI CCGG 3 cut(s) 9, 548, 563
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 5 cut(s) 57, 137, 170, 279, 329
NcoI CCATGG 1 cut(s) 243
NdeII GATC 2 cut(s) 259, 409
NlaIII CATG 3 cut(s) 51, 247, 338
NlaIV GGNNCC 2 cut(s) 163, 441
NmuCI GTSAC 1 cut(s) 223
NsbI TGCGCA 1 cut(s) 417
PfeI GAWTC 2 cut(s) 253, 313
PflMI CCANNNNNTGG 1 cut(s) 517
PkrI GCNGC 2 cut(s) 142, 396
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 163, 441
PspPI GGNCC 2 cut(s) 44, 162
RseI CAYNNNNRTG 1 cut(s) 423
SatI GCNGC 2 cut(s) 141, 395
Sau3AI GATC 2 cut(s) 259, 409
Sau96I GGNCC 2 cut(s) 44, 162
ScrFI CCNGG 1 cut(s) 305
SetI ASST 4 cut(s) 309, 330, 346, 542
SexAI ACCWGGT 1 cut(s) 303
SfaNI GCATC 2 cut(s) 103, 205
SfcI CTRYAG 1 cut(s) 374
SinI GGWCC 1 cut(s) 44
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 2 cut(s) 67, 535
SmoI CTYRAG 2 cut(s) 67, 535
Sse9I AATT 1 cut(s) 357
SsiI CCGC 4 cut(s) 24, 51, 364, 551
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 2 cut(s) 378, 402
TaqI TCGA 1 cut(s) 111
TasI AATT 1 cut(s) 357
TfiI GAWTC 2 cut(s) 253, 313
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 2 cut(s) 140, 394
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 2 cut(s) 326, 441
Van91I CCANNNNNTGG 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.