Rorug01G0213200

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016115
Physical Location & Seq
Forward (+)
30384740 .. 30389218
4479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0213200.1

Sequence Viewer

Length: 1629 bp
ATGAAGATTTTGAAGCAGCAGCAAATGGAAGGTGAGAAAATGGAAGCAGAGCTATTAGTGGTAGCAGCAAAGATCATATTGTCAGTATTGGTGGGTGGGTTTCTGCTGTTGTTCTTGTATCTCTATGAACTACTGATATTGAGGCCTAAAGGGCTAAGATCAAAGCTCCAAAAGCAAGGAATTAGAGGGCCTCATCCTTCATTTCTCTTGGGGAATATCCTTGCATTAAAGAGTCTTCAAAGCAAGGTCCAGTCATCTGCATCAAAGACTACAGATCCTCAAAAGCCCTATCATGATGATGATCGTGTAGCTTCTATTTGTCATCAATGGCCTTCAAAAATCTTCCCCCACATAGAGGAATGGAGAAATGAATATGGGCCAACATTTATGTATGCACTTGTCCACATGCAACAATTATGTATAACAGATGTAGAGCTATTGAAGGAACTTGGGCTTTGCAAGTCATTAATCTTGGGCACTCCTTCCATAACGTCCAAGATTCTCGGACCTCTTCTGGGACAGGGTCTTTTATCATCGAATGGATTAATTTGGGCCCATCAAAGGAAAACTATCGCTCCTGAATTATACCTTGCTAAGATCAAGGGCATGATGGACCTAATAGTGGACTCTACAACCTCAGTGCTAAGAACTTGGGAAAGTGAAATCCAAACGCAGGGAGGAACTGCAGAAATTAGAGTTGATGAGAATCTAAGAAACATATCTGGAGATATAATTGCAAAAGCTTGCTTTCAGAGCAATTATAGTGAAGGAGAAGAAATATTCTCAAGACTTAGGACTCTACAAAAGGTTTTGTCAAAGGGTATGATGGGGGTAGAAGGCTTAATCAGATGGTTGCCAACAAACGAAAATAGAGAAATATGGAGATTAGAGAAGGAAATTGAGTCAATGATATTGAAGGTGGTAAAACAGCGCAGTGAAGCTTCATATGAGAAAGATTTGCTGCAAATGATTCTTCAGGGTGCTGAAACTTCGGGTGAAAATGGCCTATCACATAAGAAGTTCATTGTTGATAATTGCAAAACCATATTCATTGCTGCCCATGAGACCACTGCCGTTGCAGCATCATGGAGCTTGATGCTACTAGCTTTACATCCAGATTGGCAAGCTCGTGTTCGTGCTGAGGTGCTCGAAATCTGCGGGGATAGGCCTCTACATGCAGATATGCTTCCAAGCATGAAAGTGCTCACAATGGTGATTCAGGAAGTATTGCGTCTGTACTCGCCTGTATTTTTTTTAGCAAGAGAGGTCTTTGAAACTATCACATTGAAAAACATTGTGATACCAAAGGGTGTAGTCCTTCAGATACCAGTACCCTTTCTACACCAGAACCCTGATATATGGGGCCCTGACGCGCATAAGTTCAATCCTGAAAGATTTGCCAATGGAGTTCTCAAGGCTTGCAACTCTCCACATGCCTACATGCCATTTGGACTTGGTCCCCGAATCTGTGTTGGTCAACATTTAGCAATAACAGAGCTTAAGGTGATTCTTTCTTTGATTCTATCAAAGTTTTGTTTTTCCCTCTCATCAGCATACCAGCATTCCCCTGCTTATAAGCTCTTAACGGAGCCTGAACATGGTGTCATTCTCCGTATGAGGAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

542

Amino Acids

61.03

Weight (kDa)

8.67

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 115 - 525 5e-77 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45410
fragaria_vesca FvH4_7g11980
malus_domestica MD02G1203000.v1.1
prunus_persica Prupe.2G146500_v2.0.a1
pyrus_communis pycom02g16590
rosa_chinensis RchiOBHm_Chr1g0350701
rosa_laevigata RLG00000028462
rosa_multiflora Rmu_sc0002150.1_g000004
rosa_roxburghii Rroxscaffold_4G00304590
rosa_rugosa Rorug01G0213200
rosa_samantha Rh1AG227500 Rh1BG197000 Rh1CG212400 Rh1DG224900
rosa_wichuraiana Rw1G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1575
AccII CGCG 1 cut(s) 1373
AciI CCGC 1 cut(s) 1158
AclWI GGATC 1 cut(s) 269
AcuI CTGAAG 2 cut(s) 959, 1304
AfaI GTAC 2 cut(s) 1238, 1332
AfiI CCNNNNNNNGG 6 cut(s) 355, 515, 561, 622, 673, 1598
AflII CTTAAG 1 cut(s) 1499
AgsI TTSAA 8 cut(s) 13, 239, 336, 442, 916, 1274, 1288, 1384
AleI CACNNNNGTG 1 cut(s) 1211
Alw21I GWGCWC 2 cut(s) 1149, 1206
Alw26I GTCTC 1 cut(s) 1058
AlwI GGATC 1 cut(s) 269
AoxI GGCC 8 cut(s) 143, 188, 329, 377, 552, 1003, 1166, 1363
ApaI GGGCCC 2 cut(s) 556, 1367
ApeKI GCWGC 6 cut(s) 16, 19, 65, 961, 1055, 1079
AseI ATTAAT 2 cut(s) 467, 545
AspLEI GCGC 2 cut(s) 933, 1375
AsuHPI GGTGA 4 cut(s) 44, 1007, 1225, 1516
AvaII GGWCC 4 cut(s) 247, 506, 613, 1457
BaeGI GKGCMC 3 cut(s) 479, 556, 1367
BanII GRGCYC 2 cut(s) 556, 1367
BauI CACGAG 1 cut(s) 1128
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 2 cut(s) 1149, 1206
BbvCI CCTCAGC 1 cut(s) 1140
BbvI GCAGC 6 cut(s) 28, 31, 77, 948, 1042, 1091
BccI CCATC 4 cut(s) 564, 604, 820, 843
BceAI ACGGC 1 cut(s) 1058
BcoDI GTCTC 1 cut(s) 1058
BfaI CTAG 1 cut(s) 1103
BfmI CTRYAG 2 cut(s) 270, 684
BfrI CTTAAG 1 cut(s) 1499
BglI GCCNNNNNGGC 1 cut(s) 151
BisI GCNGC 6 cut(s) 17, 20, 66, 962, 1056, 1080
BlsI GCNGC 6 cut(s) 18, 21, 67, 963, 1057, 1081
Bme18I GGWCC 4 cut(s) 247, 506, 613, 1457
BmiI GGNNCC 5 cut(s) 554, 1364, 1365, 1459, 1590
BmsI GCATC 3 cut(s) 269, 1086, 1091
BpiI GAAGAC 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 1140
BpuEI CTTGAG 2 cut(s) 769, 1397
BsaBI GATNNNNATC 2 cut(s) 300, 705
BsaI GGTCTC 1 cut(s) 1058
BsaXI ACNNNNNCTCC 2 cut(s) 559, 589
Bsc4I CCNNNNNNNGG 6 cut(s) 355, 515, 561, 622, 673, 1598
Bse1I ACTGG 2 cut(s) 250, 1328
Bse3DI GCAATG 1 cut(s) 1050
Bse8I GATNNNNATC 2 cut(s) 300, 705
BseGI GGATG 2 cut(s) 193, 1111
BseJI GATNNNNATC 2 cut(s) 300, 705
BseLI CCNNNNNNNGG 6 cut(s) 355, 515, 561, 622, 673, 1598
BseMI GCAATG 1 cut(s) 1050
BseMII CTCAG 2 cut(s) 651, 1131
BseNI ACTGG 2 cut(s) 250, 1328
BseSI GKGCMC 3 cut(s) 479, 556, 1367
BseXI GCAGC 6 cut(s) 28, 31, 77, 948, 1042, 1091
Bsh1236I CGCG 1 cut(s) 1373
BshFI GGCC 8 cut(s) 145, 190, 331, 379, 554, 1005, 1168, 1365
BsiHKAI GWGCWC 2 cut(s) 1149, 1206
BslFI GGGAC 2 cut(s) 531, 1443
BslI CCNNNNNNNGG 6 cut(s) 355, 515, 561, 622, 673, 1598
BsmAI GTCTC 1 cut(s) 1058
BsmFI GGGAC 2 cut(s) 531, 1443
BsmI GAATGC 1 cut(s) 1561
BsnI GGCC 8 cut(s) 145, 190, 331, 379, 554, 1005, 1168, 1365
Bso31I GGTCTC 1 cut(s) 1058
Bsp120I GGGCCC 2 cut(s) 552, 1363
Bsp1286I GDGCHC 5 cut(s) 479, 556, 1149, 1206, 1367
Bsp143I GATC 5 cut(s) 72, 158, 274, 301, 597
BspACI CCGC 1 cut(s) 1158
BspANI GGCC 8 cut(s) 145, 190, 331, 379, 554, 1005, 1168, 1365
BspCNI CTCAG 2 cut(s) 650, 1132
BspFNI CGCG 1 cut(s) 1373
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 5 cut(s) 554, 1364, 1365, 1459, 1590
BspMAI CTGCAG 1 cut(s) 688
BspPI GGATC 1 cut(s) 269
BspTI CTTAAG 1 cut(s) 1499
BspTNI GGTCTC 1 cut(s) 1058
BsrDI GCAATG 1 cut(s) 1050
BsrI ACTGG 2 cut(s) 250, 1328
BssMI GATC 5 cut(s) 72, 158, 274, 301, 597
BssSI CACGAG 1 cut(s) 1128
Bst2BI CACGAG 1 cut(s) 1128
Bst6I CTCTTC 1 cut(s) 516
BstAFI CTTAAG 1 cut(s) 1499
BstC8I GCNNGC 3 cut(s) 745, 1125, 1420
BstDEI CTNAG 7 cut(s) 155, 594, 637, 644, 710, 791, 1140
BstF5I GGATG 2 cut(s) 193, 1111
BstFNI CGCG 1 cut(s) 1373
BstHHI GCGC 2 cut(s) 933, 1375
BstKTI GATC 5 cut(s) 75, 161, 277, 304, 600
BstMAI GTCTC 1 cut(s) 1058
BstMBI GATC 5 cut(s) 72, 158, 274, 301, 597
BstMWI GCNNNNNNNGC 4 cut(s) 151, 172, 753, 1079
BstNSI RCATGY 4 cut(s) 409, 1178, 1436, 1444
BstSFI CTRYAG 2 cut(s) 270, 684
BstSLI GKGCMC 3 cut(s) 479, 556, 1367
BstUI CGCG 1 cut(s) 1373
BstV1I GCAGC 6 cut(s) 28, 31, 77, 948, 1042, 1091
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 8 cut(s) 145, 190, 331, 379, 554, 1005, 1168, 1365
BtsCI GGATG 2 cut(s) 193, 1111
BtsI GCAGTG 2 cut(s) 940, 1068
BtsIMutI CAGTG 3 cut(s) 645, 940, 1068
Cac8I GCNNGC 3 cut(s) 745, 1125, 1420
CciI TCATGA 1 cut(s) 292
CfoI GCGC 2 cut(s) 933, 1375
CseI GACGC 2 cut(s) 1220, 1379
Csp6I GTAC 2 cut(s) 1237, 1331
CspCI CAANNNNNGTGG 2 cut(s) 1057, 1092
CviQI GTAC 2 cut(s) 1237, 1331
DdeI CTNAG 7 cut(s) 155, 594, 637, 644, 710, 791, 1140
DpnI GATC 5 cut(s) 74, 160, 276, 303, 599
DpnII GATC 5 cut(s) 72, 158, 274, 301, 597
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Eco147I AGGCCT 2 cut(s) 145, 1168
Eco24I GRGCYC 2 cut(s) 556, 1367
Eco31I GGTCTC 1 cut(s) 1058
Eco47I GGWCC 4 cut(s) 247, 506, 613, 1457
Eco57I CTGAAG 2 cut(s) 959, 1304
EcoO109I RGGNCCY 3 cut(s) 188, 1363, 1364
EcoT38I GRGCYC 2 cut(s) 556, 1367
FaqI GGGAC 2 cut(s) 531, 1443
FauI CCCGC 1 cut(s) 1151
FauNDI CATATG 1 cut(s) 946
Fnu4HI GCNGC 6 cut(s) 17, 20, 66, 962, 1056, 1080
FokI GGATG 2 cut(s) 180, 1098
FriOI GRGCYC 2 cut(s) 556, 1367
Fsp4HI GCNGC 6 cut(s) 17, 20, 66, 962, 1056, 1080
FspBI CTAG 1 cut(s) 1103
GlaI GCGC 2 cut(s) 932, 1374
GluI GCNGC 6 cut(s) 17, 20, 66, 962, 1056, 1080
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 8 cut(s) 145, 190, 331, 379, 554, 1005, 1168, 1365
HgaI GACGC 2 cut(s) 1220, 1379
HhaI GCGC 2 cut(s) 933, 1375
Hin6I GCGC 2 cut(s) 931, 1373
HinP1I GCGC 2 cut(s) 931, 1373
HincII GTYRAC 1 cut(s) 1478
HindII GTYRAC 1 cut(s) 1478
HindIII AAGCTT 2 cut(s) 741, 939
HphI GGTGA 4 cut(s) 44, 1007, 1225, 1516
Hpy166II GTNNAC 3 cut(s) 403, 625, 1478
Hpy188I TCNGA 4 cut(s) 506, 753, 848, 1323
Hpy188III TCNNGA 7 cut(s) 293, 578, 723, 786, 1115, 1220, 1388
Hpy8I GTNNAC 3 cut(s) 403, 625, 1478
HpyCH4IV ACGT 1 cut(s) 491
HpyF10VI GCNNNNNNNGC 4 cut(s) 151, 172, 753, 1079
HpyF3I CTNAG 7 cut(s) 155, 594, 637, 644, 710, 791, 1140
HpySE526I ACGT 1 cut(s) 491
HspAI GCGC 2 cut(s) 931, 1373
Kzo9I GATC 5 cut(s) 72, 158, 274, 301, 597
LmnI GCTCC 4 cut(s) 171, 580, 1089, 1588
Lsp1109I GCAGC 6 cut(s) 28, 31, 77, 948, 1042, 1091
LweI GCATC 3 cut(s) 269, 1086, 1091
MaeI CTAG 1 cut(s) 1103
MaeII ACGT 1 cut(s) 491
MalI GATC 5 cut(s) 74, 160, 276, 303, 599
MboI GATC 5 cut(s) 72, 158, 274, 301, 597
MboII GAAGA 6 cut(s) 16, 227, 334, 503, 785, 965
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 5 cut(s) 479, 556, 1149, 1206, 1367
MluCI AATT 9 cut(s) 180, 413, 546, 581, 690, 732, 757, 897, 1033
MlyI GAGTC 4 cut(s) 241, 620, 790, 911
MseI TTAA 6 cut(s) 227, 467, 545, 842, 1500, 1583
MslI CAYNNNNRTG 3 cut(s) 297, 1199, 1211
MspCI CTTAAG 1 cut(s) 1499
Mva1269I GAATGC 1 cut(s) 1561
MvnI CGCG 1 cut(s) 1373
MwoI GCNNNNNNNGC 4 cut(s) 151, 172, 753, 1079
NdeI CATATG 1 cut(s) 946
NdeII GATC 5 cut(s) 72, 158, 274, 301, 597
NlaIV GGNNCC 5 cut(s) 554, 1364, 1365, 1459, 1590
NspI RCATGY 4 cut(s) 409, 1178, 1436, 1444
OliI CACNNNNGTG 1 cut(s) 1211
PagI TCATGA 1 cut(s) 292
PceI AGGCCT 2 cut(s) 145, 1168
PctI GAATGC 1 cut(s) 1561
PfeI GAWTC 7 cut(s) 499, 706, 970, 1216, 1464, 1507, 1519
PflFI GACNNNGTC 2 cut(s) 522, 1455
PkrI GCNGC 6 cut(s) 18, 21, 67, 963, 1057, 1081
PleI GAGTC 4 cut(s) 240, 620, 790, 910
PpsI GAGTC 4 cut(s) 240, 620, 790, 910
PshBI ATTAAT 2 cut(s) 467, 545
PsiI TTATAA 1 cut(s) 1575
PspN4I GGNNCC 5 cut(s) 554, 1364, 1365, 1459, 1590
PspOMI GGGCCC 2 cut(s) 552, 1363
PstI CTGCAG 1 cut(s) 688
PsuI RGATCY 1 cut(s) 274
PsyI GACNNNGTC 2 cut(s) 522, 1455
RsaI GTAC 2 cut(s) 1238, 1332
RsaNI GTAC 2 cut(s) 1237, 1331
RseI CAYNNNNRTG 3 cut(s) 297, 1199, 1211
SaqAI TTAA 6 cut(s) 227, 467, 545, 842, 1500, 1583
SatI GCNGC 6 cut(s) 17, 20, 66, 962, 1056, 1080
Sau3AI GATC 5 cut(s) 72, 158, 274, 301, 597
SchI GAGTC 4 cut(s) 241, 620, 790, 911
SduI GDGCHC 5 cut(s) 479, 556, 1149, 1206, 1367
SfaNI GCATC 3 cut(s) 269, 1086, 1091
SfcI CTRYAG 2 cut(s) 270, 684
SinI GGWCC 4 cut(s) 247, 506, 613, 1457
SmiMI CAYNNNNRTG 3 cut(s) 297, 1199, 1211
SmlI CTYRAG 3 cut(s) 784, 1412, 1499
SmoI CTYRAG 3 cut(s) 784, 1412, 1499
Sse9I AATT 9 cut(s) 180, 413, 546, 581, 690, 732, 757, 897, 1033
SseBI AGGCCT 2 cut(s) 145, 1168
SsiI CCGC 1 cut(s) 1158
SspI AATATT 1 cut(s) 780
SspMI CTAG 1 cut(s) 1103
StuI AGGCCT 2 cut(s) 145, 1168
TaiI ACGT 1 cut(s) 494
TaqI TCGA 2 cut(s) 536, 1149
TasI AATT 9 cut(s) 180, 413, 546, 581, 690, 732, 757, 897, 1033
TatI WGTACW 1 cut(s) 1236
TfiI GAWTC 7 cut(s) 499, 706, 970, 1216, 1464, 1507, 1519
Tru1I TTAA 6 cut(s) 227, 467, 545, 842, 1500, 1583
Tru9I TTAA 6 cut(s) 227, 467, 545, 842, 1500, 1583
TscAI CASTG 3 cut(s) 645, 940, 1075
TseI GCWGC 6 cut(s) 16, 19, 65, 961, 1055, 1079
TspDTI ATGAA 8 cut(s) 17, 141, 189, 384, 933, 1012, 1039, 1211
TspGWI ACGGA 2 cut(s) 1601, 1601
TspRI CASTG 3 cut(s) 645, 940, 1075
Tth111I GACNNNGTC 2 cut(s) 522, 1455
Vha464I CTTAAG 1 cut(s) 1499
VpaK11BI GGWCC 4 cut(s) 247, 506, 613, 1457
VspI ATTAAT 2 cut(s) 467, 545
XceI RCATGY 4 cut(s) 409, 1178, 1436, 1444
XspI CTAG 1 cut(s) 1103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.