Rh1DG224900

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0016115
Physical Location & Seq
Reverse (-)
43543692 .. 43546650
2959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG224900.1

Sequence Viewer

Length: 660 bp
ATGAGTAGGGGAAGCACTAATGTTGAAAATAATGGAGGAGGATCCCAAGGCGGACCTTGCGGTGCTTGCAAGTTCCTCAGGCGAAAGTGCTTGAGAGGCTGCATATTTGCGCCCTATTTCGACTCAGATCAAGGCACAGCTCACTTCGCGGCGGTGCACAAAGTTTTCGGTGCAAGCAACGCCTCCAAGCTACTCCTGCGCATACCGGCTCACAAGAGGCTCGATGCTGTGGTCACTCTTTGCTATGAGGCTCTTGCTAGGGTTCGAGACCCGGTTTATGGCTGCGTTGCTCACATTTTCACCCTCCAGCAGCAGGTAGTGAATTTGCAGGCAGAGTTGGCCTATGTTCAGGCCCGTCTTGCTACCTTTCAGCGTCTGCCGCCGCCACCGCCACCGCCCCCACCTCAACCTCAGAGCCTTCATTCCTTGGCCAATGTTGTGGCCTCATCCTCAGATTTGGTACCAATTTCCAACTTAATGATGCATTTTGATCCTCTTCAAACACAGCAGTGTGCAGGTCAAGAAATGACGAGCCTTTTCAATCCACTGGATCAAGAACTCATCGATGGTGAAGATCTCCAAATATTAGCACGAGAATTTGTCTCCCGCTATTTGCCGGGAGTGAGGTTCCGGCCTCCAGGTCCTCACCAAAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

219

Amino Acids

24.0

Weight (kDa)

8.52

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 19 - 117 5.7e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45410
fragaria_vesca FvH4_7g11980
malus_domestica MD02G1203000.v1.1
prunus_persica Prupe.2G146500_v2.0.a1
pyrus_communis pycom02g16590
rosa_chinensis RchiOBHm_Chr1g0350701
rosa_laevigata RLG00000028462
rosa_multiflora Rmu_sc0002150.1_g000004
rosa_roxburghii Rroxscaffold_4G00304590
rosa_rugosa Rorug01G0213200
rosa_samantha Rh1AG227500 Rh1BG197000 Rh1CG212400 Rh1DG224900
rosa_wichuraiana Rw1G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 200
Acc36I ACCTGC 2 cut(s) 304, 506
Acc65I GGTACC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 460
AccII CGCG 1 cut(s) 149
AciI CCGC 9 cut(s) 51, 60, 149, 152, 380, 383, 389, 395, 607
AclWI GGATC 4 cut(s) 36, 49, 485, 558
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 3 cut(s) 322, 596, 652
AfaI GTAC 1 cut(s) 462
AfiI CCNNNNNNNGG 2 cut(s) 278, 313
AgsI TTSAA 3 cut(s) 26, 500, 541
AjnI CCWGG 1 cut(s) 637
AleI CACNNNNGTG 1 cut(s) 508
AluBI AGCT 2 cut(s) 140, 190
AluI AGCT 2 cut(s) 140, 190
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 2 cut(s) 261, 607
Alw44I GTGCAC 1 cut(s) 155
AlwI GGATC 4 cut(s) 36, 49, 485, 558
AlwNI CAGNNNCTG 1 cut(s) 376
AoxI GGCC 5 cut(s) 339, 351, 429, 441, 632
ApaLI GTGCAC 1 cut(s) 155
ApeKI GCWGC 3 cut(s) 99, 282, 310
ApoI RAATTY 3 cut(s) 322, 596, 652
Asp718I GGTACC 1 cut(s) 460
AspLEI GCGC 2 cut(s) 112, 201
AspS9I GGNCC 3 cut(s) 53, 352, 641
AsuC2I CCSGG 2 cut(s) 272, 618
AsuHPI GGTGA 3 cut(s) 292, 581, 638
AvaII GGWCC 2 cut(s) 53, 641
AxyI CCTNAGG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 159
BalI TGGCCA 1 cut(s) 431
BamHI GGATCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 460
BauI CACGAG 1 cut(s) 591
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 86, 269, 322
BccI CCATC 1 cut(s) 560
BciT130I CCWGG 1 cut(s) 639
BcnI CCSGG 2 cut(s) 272, 618
BcoDI GTCTC 2 cut(s) 261, 607
BfaI CTAG 1 cut(s) 258
BfuAI ACCTGC 2 cut(s) 304, 506
BglII AGATCT 1 cut(s) 574
BisI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
BlsI GCNGC 6 cut(s) 101, 151, 284, 312, 381, 384
Bme1390I CCNGG 3 cut(s) 272, 618, 639
Bme18I GGWCC 2 cut(s) 53, 641
BmgT120I GGNCC 3 cut(s) 53, 352, 641
BmiI GGNNCC 3 cut(s) 43, 462, 629
BmrFI CCNGG 3 cut(s) 272, 618, 639
BmsI GCATC 2 cut(s) 214, 471
BpmI CTGGAG 2 cut(s) 290, 621
BpuEI CTTGAG 1 cut(s) 112
BpuMI CCSGG 2 cut(s) 272, 618
Bsa29I ATCGAT 1 cut(s) 564
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 46, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 313
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 552
Bse21I CCTNAGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 639
BseCI ATCGAT 1 cut(s) 564
BseDI CCNNGG 2 cut(s) 46, 426
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 2 cut(s) 278, 313
BseMII CTCAG 4 cut(s) 91, 138, 425, 465
BseNI ACTGG 1 cut(s) 552
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 3 cut(s) 86, 269, 322
BsgI GTGCAG 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 5 cut(s) 341, 353, 431, 443, 634
BshNI GGYRCC 1 cut(s) 460
BshVI ATCGAT 1 cut(s) 564
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 4 cut(s) 206, 272, 617, 631
BslI CCNNNNNNNGG 2 cut(s) 278, 313
BsmAI GTCTC 2 cut(s) 261, 607
BsnI GGCC 5 cut(s) 341, 353, 431, 443, 634
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 5 cut(s) 41, 127, 490, 550, 574
BspACI CCGC 9 cut(s) 51, 60, 149, 152, 380, 383, 389, 395, 607
BspANI GGCC 5 cut(s) 341, 353, 431, 443, 634
BspCNI CTCAG 4 cut(s) 90, 137, 424, 464
BspDI ATCGAT 1 cut(s) 564
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 3 cut(s) 43, 462, 629
BspMI ACCTGC 2 cut(s) 304, 506
BspPI GGATC 4 cut(s) 36, 49, 485, 558
BspT107I GGYRCC 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 1 cut(s) 552
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 46, 426
BssMI GATC 5 cut(s) 41, 127, 490, 550, 574
BssSI CACGAG 1 cut(s) 591
BssT1I CCWWGG 2 cut(s) 46, 426
Bst2BI CACGAG 1 cut(s) 591
Bst2UI CCWGG 1 cut(s) 639
Bst6I CTCTTC 1 cut(s) 501
BstC8I GCNNGC 3 cut(s) 67, 175, 330
BstDEI CTNAG 4 cut(s) 77, 124, 411, 451
BstF5I GGATG 1 cut(s) 446
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 2 cut(s) 112, 201
BstKTI GATC 5 cut(s) 44, 130, 493, 553, 577
BstMAI GTCTC 2 cut(s) 261, 607
BstMBI GATC 5 cut(s) 41, 127, 490, 550, 574
BstNI CCWGG 1 cut(s) 639
BstSCI CCNGG 3 cut(s) 270, 616, 637
BstSLI GKGCMC 1 cut(s) 159
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 3 cut(s) 86, 269, 322
BstX2I RGATCY 2 cut(s) 41, 574
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 2 cut(s) 41, 574
Bsu15I ATCGAT 1 cut(s) 564
Bsu36I CCTNAGG 1 cut(s) 77
BsuRI GGCC 5 cut(s) 341, 353, 431, 443, 634
BsuTUI ATCGAT 1 cut(s) 564
BtsCI GGATG 1 cut(s) 446
BtsI GCAGTG 1 cut(s) 515
BtsIMutI CAGTG 2 cut(s) 515, 545
BveI ACCTGC 2 cut(s) 304, 506
Cac8I GCNNGC 3 cut(s) 67, 175, 330
CaiI CAGNNNCTG 1 cut(s) 376
CfoI GCGC 2 cut(s) 112, 201
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 3 cut(s) 53, 352, 641
ClaI ATCGAT 1 cut(s) 564
CseI GACGC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 461
CviQI GTAC 1 cut(s) 461
DdeI CTNAG 4 cut(s) 77, 124, 411, 451
DpnI GATC 5 cut(s) 43, 129, 492, 552, 576
DpnII GATC 5 cut(s) 41, 127, 490, 550, 574
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 46, 426
Eco31I GGTCTC 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 53, 641
Eco81I CCTNAGG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 641
EcoRII CCWGG 1 cut(s) 637
EcoT14I CCWWGG 2 cut(s) 46, 426
EcoT22I ATGCAT 1 cut(s) 486
ErhI CCWWGG 2 cut(s) 46, 426
FaiI YATR 5 cut(s) 104, 203, 246, 279, 345
FauI CCCGC 1 cut(s) 614
Fnu4HI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
FspBI CTAG 1 cut(s) 258
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 2 cut(s) 111, 200
GluI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
GsuI CTGGAG 2 cut(s) 290, 621
HaeIII GGCC 5 cut(s) 341, 353, 431, 443, 634
HapII CCGG 4 cut(s) 206, 272, 617, 631
HgaI GACGC 1 cut(s) 362
HhaI GCGC 2 cut(s) 112, 201
Hin6I GCGC 2 cut(s) 110, 199
HinP1I GCGC 2 cut(s) 110, 199
HinfI GANTC 1 cut(s) 122
HpaII CCGG 4 cut(s) 206, 272, 617, 631
HphI GGTGA 3 cut(s) 292, 581, 638
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 127, 414, 454
Hpy188III TCNNGA 3 cut(s) 266, 521, 554
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 428
HpyCH4V TGCA 7 cut(s) 69, 102, 157, 173, 328, 484, 515
HpyF3I CTNAG 4 cut(s) 77, 124, 411, 451
HspAI GCGC 2 cut(s) 110, 199
KpnI GGTACC 1 cut(s) 464
Kzo9I GATC 5 cut(s) 41, 127, 490, 550, 574
Lsp1109I GCAGC 3 cut(s) 86, 269, 322
LweI GCATC 2 cut(s) 214, 471
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 232
MalI GATC 5 cut(s) 43, 129, 492, 552, 576
MboI GATC 5 cut(s) 41, 127, 490, 550, 574
MboII GAAGA 2 cut(s) 488, 584
MflI RGATCY 2 cut(s) 41, 574
MhlI GDGCHC 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 431
MluCI AATT 4 cut(s) 322, 465, 596, 652
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 495
Mox20I TGGCCA 1 cut(s) 431
Mph1103I ATGCAT 1 cut(s) 486
MscI TGGCCA 1 cut(s) 431
MseI TTAA 1 cut(s) 476
MslI CAYNNNNRTG 1 cut(s) 508
Msp20I TGGCCA 1 cut(s) 431
MspI CCGG 4 cut(s) 206, 272, 617, 631
MspR9I CCNGG 3 cut(s) 272, 618, 639
MvaI CCWGG 1 cut(s) 639
MvnI CGCG 1 cut(s) 149
NciI CCSGG 2 cut(s) 272, 618
NdeII GATC 5 cut(s) 41, 127, 490, 550, 574
NlaIV GGNNCC 3 cut(s) 43, 462, 629
NmuCI GTSAC 1 cut(s) 232
NsbI TGCGCA 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 486
OliI CACNNNNGTG 1 cut(s) 508
PkrI GCNGC 6 cut(s) 101, 151, 284, 312, 381, 384
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 641
Psp5II RGGWCCY 1 cut(s) 641
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 3 cut(s) 43, 462, 629
PspPI GGNCC 3 cut(s) 53, 352, 641
PspPPI RGGWCCY 1 cut(s) 641
PstNI CAGNNNCTG 1 cut(s) 376
PsuI RGATCY 2 cut(s) 41, 574
RsaI GTAC 1 cut(s) 462
RsaNI GTAC 1 cut(s) 461
RseI CAYNNNNRTG 1 cut(s) 508
SaqAI TTAA 1 cut(s) 476
SatI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
Sau3AI GATC 5 cut(s) 41, 127, 490, 550, 574
Sau96I GGNCC 3 cut(s) 53, 352, 641
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 3 cut(s) 272, 618, 639
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 2 cut(s) 214, 471
SinI GGWCC 2 cut(s) 53, 641
SmiMI CAYNNNNRTG 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 4 cut(s) 322, 465, 596, 652
SsiI CCGC 9 cut(s) 51, 60, 149, 152, 380, 383, 389, 395, 607
SspI AATATT 1 cut(s) 585
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 3 cut(s) 270, 616, 637
StyI CCWWGG 2 cut(s) 46, 426
TaqI TCGA 4 cut(s) 120, 222, 265, 564
TasI AATT 4 cut(s) 322, 465, 596, 652
TauI GCSGC 3 cut(s) 152, 382, 385
Tru1I TTAA 1 cut(s) 476
Tru9I TTAA 1 cut(s) 476
TscAI CASTG 2 cut(s) 515, 552
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 3 cut(s) 99, 282, 310
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 410
TspRI CASTG 2 cut(s) 515, 552
VneI GTGCAC 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 53, 641
XapI RAATTY 3 cut(s) 322, 596, 652
XspI CTAG 1 cut(s) 258
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.