FvH4_7g11980

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016115
Physical Location & Seq
Reverse (-)
10904796 .. 10907664
2869 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11980.t1

Sequence Viewer

Length: 657 bp
ATGAGTAGTGGAAGCAATAATGTTGCAAACAATGGAGAAGTGTCCCAAGGCGGGCCTTGTGGTGCTTGCAAGTTCCTCAGGCGAAAGTGCTTGCGAGGCTGCATATTTGCGCCCTATTTCGACTCAGATCAAGGCACGGCTCACTTCGCGGCGGTGCACAAAGTTTTTGGTGCAAGCAACGCCTCCAAGCTACTCCTGCGCATTCCAGCTCACAAGAGGCTCGATGCTGTGGTCACTCTTTGCTATGAGGCTCTTGCTAGGGTTCGAGACCCGGTTTACGGCTGCGTTGCTCACATTTTCACCCTCCAGCAGCAGGTAGTGAATCTGCAGGCAGAGTTGGCCTATGTTCAGGCTCGTCTTGCGACTTTGCAGCGTCTGCCACTGCCGCCACCCCCGCCACAACCTCAGAGCCATCATTCCTTGCCCAATGTTGTGGCATCATCTTCAGAGTTGCTACCAATTTCCAACATAATGATGCATCTTGATCCCATTGAAACACACCAATGTGCAGCAGGTCAAGAAATGACAAGCCTTTCCAGTCGACTGGATGAAGAACTCATCGATGATGGAGATCTCCAAGTACTAGCACGAGAATTTGTCACCCGCTATTTGCCGGGAGTGAGGTTCCGGCCTCCAGGTCCTCACCAAAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

219

Amino Acids

23.88

Weight (kDa)

7.67

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 19 - 117 5.6e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45410
fragaria_vesca FvH4_7g11980
malus_domestica MD02G1203000.v1.1
prunus_persica Prupe.2G146500_v2.0.a1
pyrus_communis pycom02g16590
rosa_chinensis RchiOBHm_Chr1g0350701
rosa_laevigata RLG00000028462
rosa_multiflora Rmu_sc0002150.1_g000004
rosa_roxburghii Rroxscaffold_4G00304590
rosa_rugosa Rorug01G0213200
rosa_samantha Rh1AG227500 Rh1BG197000 Rh1CG212400 Rh1DG224900
rosa_wichuraiana Rw1G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 200
Acc36I ACCTGC 2 cut(s) 304, 503
AccI GTMKAC 1 cut(s) 541
AccII CGCG 1 cut(s) 149
AciI CCGC 6 cut(s) 51, 149, 152, 386, 395, 604
AclWI GGATC 1 cut(s) 479
AcsI RAATTY 2 cut(s) 593, 649
AcuI CTGAAG 1 cut(s) 429
AfaI GTAC 1 cut(s) 582
AfiI CCNNNNNNNGG 3 cut(s) 51, 278, 313
AgsI TTSAA 1 cut(s) 494
AjnI CCWGG 1 cut(s) 634
AleI CACNNNNGTG 1 cut(s) 504
AluBI AGCT 2 cut(s) 190, 209
AluI AGCT 2 cut(s) 190, 209
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 261
Alw44I GTGCAC 1 cut(s) 155
AlwI GGATC 1 cut(s) 479
AlwNI CAGNNNCTG 1 cut(s) 376
AoxI GGCC 3 cut(s) 53, 339, 629
ApaLI GTGCAC 1 cut(s) 155
ApeKI GCWGC 5 cut(s) 99, 282, 310, 370, 509
ApoI RAATTY 2 cut(s) 593, 649
AspLEI GCGC 2 cut(s) 112, 201
AspS9I GGNCC 2 cut(s) 53, 638
AsuC2I CCSGG 2 cut(s) 272, 615
AsuHPI GGTGA 3 cut(s) 292, 592, 635
AvaII GGWCC 1 cut(s) 638
AxyI CCTNAGG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 159
BauI CACGAG 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 5 cut(s) 86, 269, 322, 382, 521
BccI CCATC 2 cut(s) 420, 560
BceAI ACGGC 2 cut(s) 153, 295
BciT130I CCWGG 1 cut(s) 636
BcnI CCSGG 2 cut(s) 272, 615
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 2 cut(s) 258, 584
BfmI CTRYAG 1 cut(s) 326
BfuAI ACCTGC 2 cut(s) 304, 503
BglII AGATCT 1 cut(s) 571
BisI GCNGC 7 cut(s) 100, 150, 283, 311, 371, 386, 510
BlsI GCNGC 7 cut(s) 101, 151, 284, 312, 372, 387, 511
BmcAI AGTACT 1 cut(s) 582
Bme1390I CCNGG 3 cut(s) 272, 615, 636
Bme18I GGWCC 1 cut(s) 638
BmgT120I GGNCC 2 cut(s) 53, 638
BmiI GGNNCC 1 cut(s) 626
BmrFI CCNGG 3 cut(s) 272, 615, 636
BmsI GCATC 4 cut(s) 214, 446, 465, 487
BpmI CTGGAG 2 cut(s) 290, 618
BpuMI CCSGG 2 cut(s) 272, 615
Bsa29I ATCGAT 1 cut(s) 561
BsaBI GATNNNNATC 1 cut(s) 570
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 278, 313
Bse1I ACTGG 2 cut(s) 537, 549
Bse21I CCTNAGG 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 1 cut(s) 636
BseCI ATCGAT 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 553
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 3 cut(s) 51, 278, 313
BseMII CTCAG 3 cut(s) 91, 138, 419
BseNI ACTGG 2 cut(s) 537, 549
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 5 cut(s) 86, 269, 322, 382, 521
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 3 cut(s) 55, 341, 631
BshVI ATCGAT 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 3 cut(s) 272, 614, 628
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 3 cut(s) 51, 278, 313
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 3 cut(s) 55, 341, 631
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 127, 484, 571
BspACI CCGC 6 cut(s) 51, 149, 152, 386, 395, 604
BspANI GGCC 3 cut(s) 55, 341, 631
BspCNI CTCAG 3 cut(s) 90, 137, 418
BspDI ATCGAT 1 cut(s) 561
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 626
BspMAI CTGCAG 1 cut(s) 330
BspMI ACCTGC 2 cut(s) 304, 503
BspPI GGATC 1 cut(s) 479
BspTNI GGTCTC 1 cut(s) 261
BsrI ACTGG 2 cut(s) 537, 549
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 3 cut(s) 127, 484, 571
BssSI CACGAG 1 cut(s) 588
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 1 cut(s) 636
BstAPI GCANNNNNTGC 1 cut(s) 376
BstC8I GCNNGC 5 cut(s) 53, 67, 92, 175, 330
BstDEI CTNAG 3 cut(s) 77, 124, 405
BstF5I GGATG 1 cut(s) 553
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 2 cut(s) 112, 201
BstKTI GATC 3 cut(s) 130, 487, 574
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 3 cut(s) 127, 484, 571
BstMWI GCNNNNNNNGC 9 cut(s) 96, 146, 179, 196, 338, 359, 376, 385, 394
BstNI CCWGG 1 cut(s) 636
BstSCI CCNGG 3 cut(s) 270, 613, 634
BstSFI CTRYAG 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 159
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 5 cut(s) 86, 269, 322, 382, 521
BstX2I RGATCY 1 cut(s) 571
BstXI CCANNNNNNTGG 2 cut(s) 433, 544
BstYI RGATCY 1 cut(s) 571
Bsu15I ATCGAT 1 cut(s) 561
Bsu36I CCTNAGG 1 cut(s) 77
BsuRI GGCC 3 cut(s) 55, 341, 631
BsuTUI ATCGAT 1 cut(s) 561
BtsCI GGATG 1 cut(s) 553
BtsI GCAGTG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 380
BveI ACCTGC 2 cut(s) 304, 503
Cac8I GCNNGC 5 cut(s) 53, 67, 92, 175, 330
CaiI CAGNNNCTG 1 cut(s) 376
CfoI GCGC 2 cut(s) 112, 201
Cfr13I GGNCC 2 cut(s) 53, 638
ClaI ATCGAT 1 cut(s) 561
CseI GACGC 1 cut(s) 362
Csp6I GTAC 1 cut(s) 581
CviQI GTAC 1 cut(s) 581
DdeI CTNAG 3 cut(s) 77, 124, 405
DpnI GATC 3 cut(s) 129, 486, 573
DpnII GATC 3 cut(s) 127, 484, 571
Eco130I CCWWGG 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 261
Eco47I GGWCC 1 cut(s) 638
Eco57I CTGAAG 1 cut(s) 429
Eco81I CCTNAGG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 634
EcoT14I CCWWGG 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 46
FaiI YATR 4 cut(s) 104, 246, 345, 470
FaqI GGGAC 1 cut(s) 28
FauI CCCGC 3 cut(s) 44, 402, 611
FblI GTMKAC 1 cut(s) 541
Fnu4HI GCNGC 7 cut(s) 100, 150, 283, 311, 371, 386, 510
FokI GGATG 1 cut(s) 560
Fsp4HI GCNGC 7 cut(s) 100, 150, 283, 311, 371, 386, 510
FspBI CTAG 2 cut(s) 258, 584
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 2 cut(s) 111, 200
GluI GCNGC 7 cut(s) 100, 150, 283, 311, 371, 386, 510
GsuI CTGGAG 2 cut(s) 290, 618
HaeIII GGCC 3 cut(s) 55, 341, 631
HapII CCGG 3 cut(s) 272, 614, 628
HgaI GACGC 1 cut(s) 362
HhaI GCGC 2 cut(s) 112, 201
Hin6I GCGC 2 cut(s) 110, 199
HinP1I GCGC 2 cut(s) 110, 199
HincII GTYRAC 1 cut(s) 542
HindII GTYRAC 1 cut(s) 542
HinfI GANTC 2 cut(s) 122, 322
HpaII CCGG 3 cut(s) 272, 614, 628
HphI GGTGA 3 cut(s) 292, 592, 635
Hpy166II GTNNAC 3 cut(s) 157, 277, 542
Hpy188I TCNGA 3 cut(s) 127, 408, 448
Hpy188III TCNNGA 3 cut(s) 266, 482, 518
Hpy8I GTNNAC 3 cut(s) 157, 277, 542
HpyCH4V TGCA 9 cut(s) 26, 69, 102, 157, 173, 328, 370, 478, 509
HpyF10VI GCNNNNNNNGC 9 cut(s) 96, 146, 179, 196, 338, 359, 376, 385, 394
HpyF3I CTNAG 3 cut(s) 77, 124, 405
HspAI GCGC 2 cut(s) 110, 199
Kzo9I GATC 3 cut(s) 127, 484, 571
Lsp1109I GCAGC 5 cut(s) 86, 269, 322, 382, 521
LweI GCATC 4 cut(s) 214, 446, 465, 487
MaeI CTAG 2 cut(s) 258, 584
MaeIII GTNAC 2 cut(s) 232, 598
MalI GATC 3 cut(s) 129, 486, 573
MboI GATC 3 cut(s) 127, 484, 571
MboII GAAGA 2 cut(s) 435, 563
MflI RGATCY 1 cut(s) 571
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 3 cut(s) 459, 593, 649
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 489
Mph1103I ATGCAT 1 cut(s) 480
MslI CAYNNNNRTG 3 cut(s) 473, 502, 504
MspI CCGG 3 cut(s) 272, 614, 628
MspR9I CCNGG 3 cut(s) 272, 615, 636
Mva1269I GAATGC 1 cut(s) 201
MvaI CCWGG 1 cut(s) 636
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 9 cut(s) 96, 146, 179, 196, 338, 359, 376, 385, 394
NciI CCSGG 2 cut(s) 272, 615
NdeII GATC 3 cut(s) 127, 484, 571
NlaIV GGNNCC 1 cut(s) 626
NmuCI GTSAC 2 cut(s) 232, 598
NsbI TGCGCA 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 480
OliI CACNNNNGTG 1 cut(s) 504
PctI GAATGC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 7 cut(s) 101, 151, 284, 312, 372, 387, 511
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 634
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 626
PspPI GGNCC 2 cut(s) 53, 638
PspPPI RGGWCCY 1 cut(s) 638
PstI CTGCAG 1 cut(s) 330
PstNI CAGNNNCTG 1 cut(s) 376
PsuI RGATCY 1 cut(s) 571
RsaI GTAC 1 cut(s) 582
RsaNI GTAC 1 cut(s) 581
RseI CAYNNNNRTG 3 cut(s) 473, 502, 504
SalI GTCGAC 1 cut(s) 540
SatI GCNGC 7 cut(s) 100, 150, 283, 311, 371, 386, 510
Sau3AI GATC 3 cut(s) 127, 484, 571
Sau96I GGNCC 2 cut(s) 53, 638
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 3 cut(s) 272, 615, 636
SduI GDGCHC 1 cut(s) 159
SetI ASST 7 cut(s) 192, 211, 318, 406, 517, 626, 640
SfaNI GCATC 4 cut(s) 214, 446, 465, 487
SfcI CTRYAG 1 cut(s) 326
SinI GGWCC 1 cut(s) 638
SmiMI CAYNNNNRTG 3 cut(s) 473, 502, 504
Sse9I AATT 3 cut(s) 459, 593, 649
SsiI CCGC 6 cut(s) 51, 149, 152, 386, 395, 604
SspMI CTAG 2 cut(s) 258, 584
StyD4I CCNGG 3 cut(s) 270, 613, 634
StyI CCWWGG 1 cut(s) 46
TaqI TCGA 5 cut(s) 120, 222, 265, 541, 561
TasI AATT 3 cut(s) 459, 593, 649
TatI WGTACW 1 cut(s) 580
TauI GCSGC 2 cut(s) 152, 388
TfiI GAWTC 1 cut(s) 322
TscAI CASTG 1 cut(s) 387
TseFI GTSAC 2 cut(s) 232, 598
TseI GCWGC 5 cut(s) 99, 282, 310, 370, 509
Tsp45I GTSAC 2 cut(s) 232, 598
TspDTI ATGAA 1 cut(s) 564
TspRI CASTG 1 cut(s) 387
VneI GTGCAC 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 2 cut(s) 593, 649
XmiI GTMKAC 1 cut(s) 541
XspI CTAG 2 cut(s) 258, 584
ZrmI AGTACT 1 cut(s) 582
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.