MD02G1203000.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0016115
Physical Location & Seq
Forward (+)
20157426 .. 20160671
3246 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1203000.v1.1.491

Sequence Viewer

Length: 687 bp
ATGAGTGAATCGTCATCAAATGGAAACAACAATAATGGAGGAGGAGGCGGTCCTTGTGGTGCTTGCAAGTTCCTGAGGAGAAAGTGCATAAAAGGGTGCATATTTGCGCCGTACTTCGACGCAGAGCAAGGCACGGCGCACTTTGCTGCGGTGCACAAAGTGTTTGGTGCGAGCAACGCCTCAAAGCTTCTGTTGCGCATACCACCACACAAGCGGCTCGATGCTGTCGTCACCCTTAGCTATGAGGCTCTTGCTAGGGTTAGAGACCCTGTCTATGGCTGTGTTTCTCACATCTTCACTCTCCAACAGCAGGTAGTGAATTTGCAAGCAGAGTTAGCCTATGTTCAAGCCCGTCTTGGCACCTTGCAGCGTTTTCCGCTGCCGCCACAATCACCTCAGCTCGAAATCCCTCCACCCACCAGAAGCCTTCAGTATTCCTCGTCCAATATTAACGTGACATCGTCATCGTCCTCAGATATGGTACCAACTTCCAACATATTGATGCATTGTGATCCTCTCCAAGCACCAAATACATCATCTGAAATGTCAAGCCTCTTCAACTCAGAGGATCAAGAACTCATCATTGATGGTGAAAATCTGCAAGCACTGGCTCGAGAGTTCGTCTGCCGGTACTTGCCAGGAGTAAGGTTGAACAAGTCTTCCGGTTCTCATCATCAAAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

229

Amino Acids

24.84

Weight (kDa)

8.18

Isoelectric Point (pI)

69.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 18 - 116 4.2e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45410
fragaria_vesca FvH4_7g11980
malus_domestica MD02G1203000.v1.1
prunus_persica Prupe.2G146500_v2.0.a1
pyrus_communis pycom02g16590
rosa_chinensis RchiOBHm_Chr1g0350701
rosa_laevigata RLG00000028462
rosa_multiflora Rmu_sc0002150.1_g000004
rosa_roxburghii Rroxscaffold_4G00304590
rosa_rugosa Rorug01G0213200
rosa_samantha Rh1AG227500 Rh1BG197000 Rh1CG212400 Rh1DG224900
rosa_wichuraiana Rw1G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 301
Acc65I GGTACC 1 cut(s) 481
AccB1I GGYRCC 2 cut(s) 359, 481
AciI CCGC 5 cut(s) 48, 149, 214, 377, 383
AclWI GGATC 2 cut(s) 506, 576
AcsI RAATTY 2 cut(s) 319, 679
AcuI CTGAAG 1 cut(s) 413
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 3 cut(s) 113, 483, 632
AfiI CCNNNNNNNGG 2 cut(s) 275, 310
AgsI TTSAA 3 cut(s) 347, 559, 652
AjnI CCWGG 1 cut(s) 637
AloI GAACNNNNNNTCC 2 cut(s) 644, 676
AluBI AGCT 3 cut(s) 187, 240, 400
AluI AGCT 3 cut(s) 187, 240, 400
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 258
Alw44I GTGCAC 1 cut(s) 152
AlwI GGATC 2 cut(s) 506, 576
Ama87I CYCGRG 1 cut(s) 612
ApaLI GTGCAC 1 cut(s) 152
ApeKI GCWGC 3 cut(s) 146, 367, 379
ApoI RAATTY 2 cut(s) 319, 679
Asp718I GGTACC 1 cut(s) 481
AspLEI GCGC 3 cut(s) 109, 139, 198
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 3 cut(s) 223, 384, 602
AvaI CYCGRG 1 cut(s) 612
AvaII GGWCC 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 156
BanI GGYRCC 2 cut(s) 359, 481
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 133, 366, 379
BccI CCATC 1 cut(s) 581
BceAI ACGGC 2 cut(s) 94, 150
BciT130I CCWGG 1 cut(s) 639
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 5 cut(s) 147, 215, 368, 380, 383
BlsI GCNGC 5 cut(s) 148, 216, 369, 381, 384
Bme1390I CCNGG 1 cut(s) 639
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 612
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 361, 483
BmrFI CCNGG 1 cut(s) 639
BmsI GCATC 2 cut(s) 211, 492
BpiI GAAGAC 1 cut(s) 651
Bpu10I CCTNAGC 2 cut(s) 236, 396
BsaI GGTCTC 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 662
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 310
Bse118I RCCGGY 1 cut(s) 627
Bse1I ACTGG 1 cut(s) 612
Bse21I CCTNAGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 639
BseLI CCNNNNNNNGG 2 cut(s) 275, 310
BseMII CTCAG 4 cut(s) 65, 410, 486, 576
BseNI ACTGG 1 cut(s) 612
BseRI GAGGAG 3 cut(s) 54, 57, 91
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 3 cut(s) 133, 366, 379
BshNI GGYRCC 2 cut(s) 359, 481
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 612
BsiSI CCGG 2 cut(s) 628, 663
BslI CCNNNNNNNGG 2 cut(s) 275, 310
BsmAI GTCTC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 612
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 511, 568
BspACI CCGC 5 cut(s) 48, 149, 214, 377, 383
BspCNI CTCAG 4 cut(s) 66, 409, 485, 575
BspLI GGNNCC 2 cut(s) 361, 483
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 2 cut(s) 506, 576
BspT107I GGYRCC 2 cut(s) 359, 481
BspTNI GGTCTC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 627
BsrI ACTGG 1 cut(s) 612
BssAI RCCGGY 1 cut(s) 627
BssMI GATC 2 cut(s) 511, 568
Bst2UI CCWGG 1 cut(s) 639
Bst6I CTCTTC 1 cut(s) 560
BstC8I GCNNGC 4 cut(s) 64, 172, 327, 603
BstDEI CTNAG 5 cut(s) 74, 236, 396, 472, 562
BstHHI GCGC 3 cut(s) 109, 139, 198
BstKTI GATC 2 cut(s) 514, 571
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 511, 568
BstMWI GCNNNNNNNGC 5 cut(s) 143, 176, 193, 335, 376
BstNI CCWGG 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 637
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 133, 366, 379
BstV2I GAAGAC 1 cut(s) 651
Bsu36I CCTNAGG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 605
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 4 cut(s) 64, 172, 327, 603
CfoI GCGC 3 cut(s) 109, 139, 198
Cfr10I RCCGGY 1 cut(s) 627
Cfr13I GGNCC 1 cut(s) 50
CseI GACGC 1 cut(s) 128
Csp6I GTAC 3 cut(s) 112, 482, 631
CviQI GTAC 3 cut(s) 112, 482, 631
DdeI CTNAG 5 cut(s) 74, 236, 396, 472, 562
DpnI GATC 2 cut(s) 513, 570
DpnII GATC 2 cut(s) 511, 568
DraIII CACNNNGTG 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
Eco31I GGTCTC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 413
Eco81I CCTNAGG 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 637
EcoT22I ATGCAT 1 cut(s) 507
FaiI YATR 8 cut(s) 89, 101, 200, 243, 276, 342, 479, 497
FalI AAGNNNNNCTT 2 cut(s) 339, 371
Fnu4HI GCNGC 5 cut(s) 147, 215, 368, 380, 383
Fsp4HI GCNGC 5 cut(s) 147, 215, 368, 380, 383
FspBI CTAG 1 cut(s) 255
FspI TGCGCA 1 cut(s) 197
GlaI GCGC 3 cut(s) 108, 138, 197
GluI GCNGC 5 cut(s) 147, 215, 368, 380, 383
HapII CCGG 2 cut(s) 628, 663
HgaI GACGC 1 cut(s) 128
HhaI GCGC 3 cut(s) 109, 139, 198
Hin6I GCGC 3 cut(s) 107, 137, 196
HinP1I GCGC 3 cut(s) 107, 137, 196
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 8
HpaII CCGG 2 cut(s) 628, 663
HphI GGTGA 3 cut(s) 223, 384, 602
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 3 cut(s) 475, 541, 565
Hpy188III TCNNGA 3 cut(s) 73, 572, 614
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 437
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 8 cut(s) 66, 87, 99, 154, 325, 367, 505, 601
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 176, 193, 335, 376
HpyF3I CTNAG 5 cut(s) 74, 236, 396, 472, 562
HpySE526I ACGT 1 cut(s) 453
HspAI GCGC 3 cut(s) 107, 137, 196
KpnI GGTACC 1 cut(s) 485
Kzo9I GATC 2 cut(s) 511, 568
LpnPI CCDG 9 cut(s) 86, 282, 296, 433, 593, 624, 641, 651, 676
Lsp1109I GCAGC 3 cut(s) 133, 366, 379
LweI GCATC 2 cut(s) 211, 492
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 2 cut(s) 229, 454
MalI GATC 2 cut(s) 513, 570
MboI GATC 2 cut(s) 511, 568
MboII GAAGA 3 cut(s) 286, 547, 651
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 319, 679
MmeI TCCRAC 2 cut(s) 328, 516
Mph1103I ATGCAT 1 cut(s) 507
MseI TTAA 1 cut(s) 450
MslI CAYNNNNRTG 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 2 cut(s) 628, 663
MspR9I CCNGG 1 cut(s) 639
MvaI CCWGG 1 cut(s) 639
MwoI GCNNNNNNNGC 5 cut(s) 143, 176, 193, 335, 376
NdeII GATC 2 cut(s) 511, 568
NlaIV GGNNCC 2 cut(s) 361, 483
NmuCI GTSAC 2 cut(s) 229, 454
NsbI TGCGCA 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 507
PaeR7I CTCGAG 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PfeI GAWTC 1 cut(s) 8
PflFI GACNNNGTC 2 cut(s) 269, 460
PkrI GCNGC 5 cut(s) 148, 216, 369, 381, 384
Psp6I CCWGG 1 cut(s) 637
PspGI CCWGG 1 cut(s) 637
PspN4I GGNNCC 2 cut(s) 361, 483
PspPI GGNCC 1 cut(s) 50
PsyI GACNNNGTC 2 cut(s) 269, 460
RsaI GTAC 3 cut(s) 113, 483, 632
RsaNI GTAC 3 cut(s) 112, 482, 631
RseI CAYNNNNRTG 1 cut(s) 500
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 5 cut(s) 147, 215, 368, 380, 383
Sau3AI GATC 2 cut(s) 511, 568
Sau96I GGNCC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 639
SduI GDGCHC 1 cut(s) 156
SetI ASST 8 cut(s) 189, 242, 315, 365, 397, 402, 456, 650
SfaNI GCATC 2 cut(s) 211, 492
Sfr274I CTCGAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 612
SmoI CTYRAG 1 cut(s) 612
Sse9I AATT 2 cut(s) 319, 679
SsiI CCGC 5 cut(s) 48, 149, 214, 377, 383
SspI AATATT 1 cut(s) 448
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 637
TaiI ACGT 1 cut(s) 456
TaqI TCGA 4 cut(s) 117, 219, 402, 613
TasI AATT 2 cut(s) 319, 679
TauI GCSGC 2 cut(s) 217, 385
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 1 cut(s) 612
TseFI GTSAC 2 cut(s) 229, 454
TseI GCWGC 3 cut(s) 146, 367, 379
Tsp45I GTSAC 2 cut(s) 229, 454
TspRI CASTG 1 cut(s) 612
Tth111I GACNNNGTC 2 cut(s) 269, 460
VneI GTGCAC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 2 cut(s) 319, 679
XhoI CTCGAG 1 cut(s) 612
XspI CTAG 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.