RLG00000028462

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016115
Physical Location & Seq
Forward (+)
23084048 .. 23086564
2517 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028462

Sequence Viewer

Length: 642 bp
ATGAGTAGGGGAAGTACTAATGTTGAAAATAATGGAGGAGGATCCCAAGGCGGACCTTGCGGTGCTTGCAAGTTCCTCAGGCGAAAGTGCTTGAGAGGCTGCATATTTGCGCCCTATTTCGACTCGGATCAAGGCACAGCTCACTTCGCGGCGGTGCACAAAGTTTTCGGTGCAAGCAACGCCTCCAAGCTACTCCTGCGCGTACCGGCTCACAAGAGGCTCGATGCTGTGGTCACTCTTTGCTATGAGGCTCTTGCTAGGGTTCGAGACCCGGTTTACGGCTGCGTTGCTCACATTTTCACCCTCCAGCAGCAGGTAGTGAATTTGCAGGCAGAGTTGGCCTATGTTCAGGCCCGTCTTGCTACCTTTCAGCCTCCGCCGCCGCCTCAACCTCAGAGCCTTCATTCCTTGGCCAATGTTGTGGCCTCATCCTCAGATTTGGTACCAATTTCCAACTTAATGATGCATTTTGATCCTCTTCAAACACAGCAGTGTGCAGGTCAAGAAATGACGAGCCTTTTCAATCCACTGGATCAAGAACTCATCGATGGAGAAGATCTCCAAGTATTAGCACGAGAATTTGTCTCCCGCTATTTGCCGGGAGTGAGGTTCCTGCCTCCAGGTCCTCACCAAAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

214

Amino Acids

23.27

Weight (kDa)

7.64

Isoelectric Point (pI)

54.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 19 - 117 4.3e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45410
fragaria_vesca FvH4_7g11980
malus_domestica MD02G1203000.v1.1
prunus_persica Prupe.2G146500_v2.0.a1
pyrus_communis pycom02g16590
rosa_chinensis RchiOBHm_Chr1g0350701
rosa_laevigata RLG00000028462
rosa_multiflora Rmu_sc0002150.1_g000004
rosa_roxburghii Rroxscaffold_4G00304590
rosa_rugosa Rorug01G0213200
rosa_samantha Rh1AG227500 Rh1BG197000 Rh1CG212400 Rh1DG224900
rosa_wichuraiana Rw1G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 304, 488
Acc65I GGTACC 1 cut(s) 442
AccB1I GGYRCC 1 cut(s) 442
AccII CGCG 2 cut(s) 149, 201
AciI CCGC 8 cut(s) 51, 60, 149, 152, 377, 380, 383, 589
AclWI GGATC 5 cut(s) 36, 49, 135, 467, 540
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 3 cut(s) 322, 578, 634
AfaI GTAC 3 cut(s) 16, 204, 444
AfiI CCNNNNNNNGG 2 cut(s) 278, 313
AgsI TTSAA 3 cut(s) 26, 482, 523
AjnI CCWGG 1 cut(s) 619
AleI CACNNNNGTG 1 cut(s) 490
AluBI AGCT 2 cut(s) 140, 190
AluI AGCT 2 cut(s) 140, 190
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 2 cut(s) 261, 589
Alw44I GTGCAC 1 cut(s) 155
AlwI GGATC 5 cut(s) 36, 49, 135, 467, 540
AoxI GGCC 4 cut(s) 339, 351, 411, 423
ApaLI GTGCAC 1 cut(s) 155
ApeKI GCWGC 3 cut(s) 99, 282, 310
ApoI RAATTY 3 cut(s) 322, 578, 634
Asp718I GGTACC 1 cut(s) 442
AspLEI GCGC 2 cut(s) 112, 201
AspS9I GGNCC 3 cut(s) 53, 352, 623
AsuC2I CCSGG 2 cut(s) 272, 600
AsuHPI GGTGA 2 cut(s) 292, 620
AvaII GGWCC 2 cut(s) 53, 623
AxyI CCTNAGG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 159
BalI TGGCCA 1 cut(s) 413
BamHI GGATCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 442
BauI CACGAG 1 cut(s) 573
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 86, 269, 322
BccI CCATC 1 cut(s) 542
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 621
BcnI CCSGG 2 cut(s) 272, 600
BcoDI GTCTC 2 cut(s) 261, 589
BfaI CTAG 1 cut(s) 258
BfuAI ACCTGC 2 cut(s) 304, 488
BglII AGATCT 1 cut(s) 556
BisI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
BlsI GCNGC 6 cut(s) 101, 151, 284, 312, 381, 384
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 3 cut(s) 272, 600, 621
Bme18I GGWCC 2 cut(s) 53, 623
BmgT120I GGNCC 3 cut(s) 53, 352, 623
BmiI GGNNCC 3 cut(s) 43, 444, 611
BmrFI CCNGG 3 cut(s) 272, 600, 621
BmsI GCATC 2 cut(s) 214, 453
BplI GAGNNNNNCTC 2 cut(s) 543, 575
BpmI CTGGAG 2 cut(s) 290, 603
BpuEI CTTGAG 1 cut(s) 112
BpuMI CCSGG 2 cut(s) 272, 600
Bsa29I ATCGAT 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 46, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 313
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 534
Bse21I CCTNAGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 621
BseCI ATCGAT 1 cut(s) 546
BseDI CCNNGG 2 cut(s) 46, 408
BseGI GGATG 1 cut(s) 428
BseLI CCNNNNNNNGG 2 cut(s) 278, 313
BseMII CTCAG 3 cut(s) 91, 407, 447
BseNI ACTGG 1 cut(s) 534
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 3 cut(s) 86, 269, 322
BsgI GTGCAG 1 cut(s) 516
Bsh1236I CGCG 2 cut(s) 149, 201
BshFI GGCC 4 cut(s) 341, 353, 413, 425
BshNI GGYRCC 1 cut(s) 442
BshVI ATCGAT 1 cut(s) 546
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 3 cut(s) 206, 272, 599
BslI CCNNNNNNNGG 2 cut(s) 278, 313
BsmAI GTCTC 2 cut(s) 261, 589
BsnI GGCC 4 cut(s) 341, 353, 413, 425
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 5 cut(s) 41, 127, 472, 532, 556
BspACI CCGC 8 cut(s) 51, 60, 149, 152, 377, 380, 383, 589
BspANI GGCC 4 cut(s) 341, 353, 413, 425
BspCNI CTCAG 3 cut(s) 90, 406, 446
BspDI ATCGAT 1 cut(s) 546
BspFNI CGCG 2 cut(s) 149, 201
BspLI GGNNCC 3 cut(s) 43, 444, 611
BspMI ACCTGC 2 cut(s) 304, 488
BspPI GGATC 5 cut(s) 36, 49, 135, 467, 540
BspT107I GGYRCC 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 1 cut(s) 534
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 46, 408
BssMI GATC 5 cut(s) 41, 127, 472, 532, 556
BssSI CACGAG 1 cut(s) 573
BssT1I CCWWGG 2 cut(s) 46, 408
Bst2BI CACGAG 1 cut(s) 573
Bst2UI CCWGG 1 cut(s) 621
Bst6I CTCTTC 1 cut(s) 483
BstC8I GCNNGC 3 cut(s) 67, 175, 330
BstDEI CTNAG 3 cut(s) 77, 393, 433
BstF5I GGATG 1 cut(s) 428
BstFNI CGCG 2 cut(s) 149, 201
BstHHI GCGC 2 cut(s) 112, 201
BstKTI GATC 5 cut(s) 44, 130, 475, 535, 559
BstMAI GTCTC 2 cut(s) 261, 589
BstMBI GATC 5 cut(s) 41, 127, 472, 532, 556
BstMWI GCNNNNNNNGC 9 cut(s) 57, 66, 96, 146, 179, 196, 338, 359, 379
BstNI CCWGG 1 cut(s) 621
BstSCI CCNGG 3 cut(s) 270, 598, 619
BstSLI GKGCMC 1 cut(s) 159
BstUI CGCG 2 cut(s) 149, 201
BstV1I GCAGC 3 cut(s) 86, 269, 322
BstX2I RGATCY 2 cut(s) 41, 556
BstXI CCANNNNNNTGG 1 cut(s) 421
BstYI RGATCY 2 cut(s) 41, 556
Bsu15I ATCGAT 1 cut(s) 546
Bsu36I CCTNAGG 1 cut(s) 77
BsuRI GGCC 4 cut(s) 341, 353, 413, 425
BsuTUI ATCGAT 1 cut(s) 546
BtsCI GGATG 1 cut(s) 428
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 2 cut(s) 497, 527
BveI ACCTGC 2 cut(s) 304, 488
Cac8I GCNNGC 3 cut(s) 67, 175, 330
CfoI GCGC 2 cut(s) 112, 201
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 3 cut(s) 53, 352, 623
ClaI ATCGAT 1 cut(s) 546
Csp6I GTAC 3 cut(s) 15, 203, 443
CviQI GTAC 3 cut(s) 15, 203, 443
DdeI CTNAG 3 cut(s) 77, 393, 433
DpnI GATC 5 cut(s) 43, 129, 474, 534, 558
DpnII GATC 5 cut(s) 41, 127, 472, 532, 556
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
EciI GGCGGA 2 cut(s) 66, 366
Eco130I CCWWGG 2 cut(s) 46, 408
Eco31I GGTCTC 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 53, 623
Eco81I CCTNAGG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 619
EcoT14I CCWWGG 2 cut(s) 46, 408
EcoT22I ATGCAT 1 cut(s) 468
ErhI CCWWGG 2 cut(s) 46, 408
FaiI YATR 3 cut(s) 104, 246, 345
FauI CCCGC 1 cut(s) 596
Fnu4HI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
FokI GGATG 1 cut(s) 415
Fsp4HI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
FspBI CTAG 1 cut(s) 258
GlaI GCGC 2 cut(s) 111, 200
GluI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
GsuI CTGGAG 2 cut(s) 290, 603
HaeIII GGCC 4 cut(s) 341, 353, 413, 425
HapII CCGG 3 cut(s) 206, 272, 599
HhaI GCGC 2 cut(s) 112, 201
Hin6I GCGC 2 cut(s) 110, 199
HinP1I GCGC 2 cut(s) 110, 199
HinfI GANTC 1 cut(s) 122
HpaII CCGG 3 cut(s) 206, 272, 599
HphI GGTGA 2 cut(s) 292, 620
Hpy166II GTNNAC 2 cut(s) 157, 277
Hpy188I TCNGA 3 cut(s) 127, 396, 436
Hpy188III TCNNGA 3 cut(s) 266, 503, 536
Hpy8I GTNNAC 2 cut(s) 157, 277
HpyAV CCTTC 1 cut(s) 410
HpyCH4V TGCA 7 cut(s) 69, 102, 157, 173, 328, 466, 497
HpyF10VI GCNNNNNNNGC 9 cut(s) 57, 66, 96, 146, 179, 196, 338, 359, 379
HpyF3I CTNAG 3 cut(s) 77, 393, 433
HspAI GCGC 2 cut(s) 110, 199
KpnI GGTACC 1 cut(s) 446
Kzo9I GATC 5 cut(s) 41, 127, 472, 532, 556
Lsp1109I GCAGC 3 cut(s) 86, 269, 322
LweI GCATC 2 cut(s) 214, 453
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 232
MalI GATC 5 cut(s) 43, 129, 474, 534, 558
MboI GATC 5 cut(s) 41, 127, 472, 532, 556
MboII GAAGA 2 cut(s) 470, 566
MflI RGATCY 2 cut(s) 41, 556
MhlI GDGCHC 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 4 cut(s) 322, 447, 578, 634
MluNI TGGCCA 1 cut(s) 413
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 477
Mox20I TGGCCA 1 cut(s) 413
Mph1103I ATGCAT 1 cut(s) 468
MscI TGGCCA 1 cut(s) 413
MseI TTAA 1 cut(s) 458
MslI CAYNNNNRTG 1 cut(s) 490
Msp20I TGGCCA 1 cut(s) 413
MspI CCGG 3 cut(s) 206, 272, 599
MspR9I CCNGG 3 cut(s) 272, 600, 621
MvaI CCWGG 1 cut(s) 621
MvnI CGCG 2 cut(s) 149, 201
MwoI GCNNNNNNNGC 9 cut(s) 57, 66, 96, 146, 179, 196, 338, 359, 379
NciI CCSGG 2 cut(s) 272, 600
NdeII GATC 5 cut(s) 41, 127, 472, 532, 556
NlaIV GGNNCC 3 cut(s) 43, 444, 611
NmuCI GTSAC 1 cut(s) 232
NsiI ATGCAT 1 cut(s) 468
OliI CACNNNNGTG 1 cut(s) 490
PkrI GCNGC 6 cut(s) 101, 151, 284, 312, 381, 384
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 623
Psp5II RGGWCCY 1 cut(s) 623
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PspN4I GGNNCC 3 cut(s) 43, 444, 611
PspPI GGNCC 3 cut(s) 53, 352, 623
PspPPI RGGWCCY 1 cut(s) 623
PsuI RGATCY 2 cut(s) 41, 556
RsaI GTAC 3 cut(s) 16, 204, 444
RsaNI GTAC 3 cut(s) 15, 203, 443
RseI CAYNNNNRTG 1 cut(s) 490
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
Sau3AI GATC 5 cut(s) 41, 127, 472, 532, 556
Sau96I GGNCC 3 cut(s) 53, 352, 623
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 3 cut(s) 272, 600, 621
SduI GDGCHC 1 cut(s) 159
SetI ASST 9 cut(s) 58, 142, 192, 318, 368, 394, 502, 611, 625
SfaNI GCATC 2 cut(s) 214, 453
SinI GGWCC 2 cut(s) 53, 623
SmiMI CAYNNNNRTG 1 cut(s) 490
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 4 cut(s) 322, 447, 578, 634
SsiI CCGC 8 cut(s) 51, 60, 149, 152, 377, 380, 383, 589
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 3 cut(s) 270, 598, 619
StyI CCWWGG 2 cut(s) 46, 408
TaqI TCGA 4 cut(s) 120, 222, 265, 546
TasI AATT 4 cut(s) 322, 447, 578, 634
TatI WGTACW 1 cut(s) 14
TauI GCSGC 3 cut(s) 152, 382, 385
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TscAI CASTG 2 cut(s) 497, 534
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 3 cut(s) 99, 282, 310
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 392
TspRI CASTG 2 cut(s) 497, 534
VneI GTGCAC 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 53, 623
XapI RAATTY 3 cut(s) 322, 578, 634
XspI CTAG 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.