Prupe.2G146500_v2.0.a1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016115
Physical Location & Seq
Reverse (-)
20283293 .. 20286346
3054 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G146500.1

Sequence Viewer

Length: 699 bp
ATGAGTGGATCATCAACAAATGGAAGCAACAACAATGGAGGAGGAGGAGGAGGTGGAGGAGGTGGAGGGCCTTGTGGTGCCTGCAAGTTTCTGAGGAGAAAATGCATAAAAGGGTGCATATTTGCTCCCTACTTCGACTCAGAGCAAGGCACGGCTCACTTTGCTGCGGTGCACAAAGTGTTTGGTGCAAGCAATGCCTCCAAGCTTCTCCTGCGCATACCACCCCACAAGAGGCTCGATGCTGTCGTCACCCTCTGCTATGAGGCTCTTGCTAGGGTTAGAGACCCTGTCTATGGCTGCGTTTCTCACATTTTCACCCTTCAACAGCAGGTAGTGAATTTGCAGGCAGAGTTAGCCTATGTTCAGGCCCGCCTTGCAACCTTGCAGCGCGCGCCGCCTCCACTGCCGCTGCCTCAACTCGAATGCCCTCCTCCACCCAGAAGCCTTCACTATTCCTCGTCCCATATCAATGTGACATCACCTCCATGCTCAGAGTTTGTGCCAACTTCCAACTTGTTGACGCATTTTGATCCTCTACAAACAGTGCCACACACTGCAGAAATGACAAGTCTTTTCAACTCATTGGATCAAGAACTTATTGATGGGGAAGATCTTCAGGCATTAGCTCGAGAGTTCGTGTGTCGATACTTGCCAGGAGTGAGGTTGAACAAGCCTTCGACTTCTCATCAAAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

233

Amino Acids

25.01

Weight (kDa)

8.39

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45410
fragaria_vesca FvH4_7g11980
malus_domestica MD02G1203000.v1.1
prunus_persica Prupe.2G146500_v2.0.a1
pyrus_communis pycom02g16590
rosa_chinensis RchiOBHm_Chr1g0350701
rosa_laevigata RLG00000028462
rosa_multiflora Rmu_sc0002150.1_g000004
rosa_roxburghii Rroxscaffold_4G00304590
rosa_rugosa Rorug01G0213200
rosa_samantha Rh1AG227500 Rh1BG197000 Rh1CG212400 Rh1DG224900
rosa_wichuraiana Rw1G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 215
Acc36I ACCTGC 1 cut(s) 319
AccB1I GGYRCC 1 cut(s) 77
AccII CGCG 2 cut(s) 390, 392
AciI CCGC 4 cut(s) 167, 370, 395, 407
AclWI GGATC 3 cut(s) 16, 524, 594
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 599
AdeI CACNNNGTG 1 cut(s) 178
AfiI CCNNNNNNNGG 2 cut(s) 231, 293
AgsI TTSAA 3 cut(s) 323, 577, 667
AjnI CCWGG 1 cut(s) 652
AluBI AGCT 2 cut(s) 205, 626
AluI AGCT 2 cut(s) 205, 626
Alw21I GWGCWC 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 276
Alw44I GTGCAC 1 cut(s) 170
AlwI GGATC 3 cut(s) 16, 524, 594
Ama87I CYCGRG 1 cut(s) 627
AoxI GGCC 2 cut(s) 68, 366
ApaLI GTGCAC 1 cut(s) 170
ApeKI GCWGC 4 cut(s) 164, 297, 385, 409
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 4 cut(s) 216, 390, 392, 394
AspS9I GGNCC 2 cut(s) 68, 367
AsuHPI GGTGA 3 cut(s) 241, 307, 471
AvaI CYCGRG 1 cut(s) 627
BaeGI GKGCMC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 174
BbvI GCAGC 4 cut(s) 151, 284, 396, 397
BccI CCATC 1 cut(s) 596
BceAI ACGGC 1 cut(s) 168
BciT130I CCWGG 1 cut(s) 654
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 555
BfuAI ACCTGC 1 cut(s) 319
BglII AGATCT 1 cut(s) 610
BisI GCNGC 6 cut(s) 165, 298, 386, 395, 407, 410
BlsI GCNGC 6 cut(s) 166, 299, 387, 396, 408, 411
Bme1390I CCNGG 1 cut(s) 654
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 2 cut(s) 68, 367
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 654
BmsI GCATC 1 cut(s) 229
BsaI GGTCTC 1 cut(s) 276
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 293
Bse3DI GCAATG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 654
BseLI CCNNNNNNNGG 2 cut(s) 231, 293
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 3 cut(s) 83, 153, 504
BsePI GCGCGC 2 cut(s) 388, 390
BseRI GAGGAG 7 cut(s) 54, 57, 60, 63, 72, 109, 420
BseSI GKGCMC 1 cut(s) 174
BseXI GCAGC 4 cut(s) 151, 284, 396, 397
Bsh1236I CGCG 2 cut(s) 390, 392
BshFI GGCC 2 cut(s) 70, 368
BshNI GGYRCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 627
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 2 cut(s) 231, 293
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 445
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 2 cut(s) 70, 368
Bso31I GGTCTC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 627
Bsp1286I GDGCHC 1 cut(s) 174
Bsp143I GATC 4 cut(s) 8, 529, 586, 610
BspACI CCGC 4 cut(s) 167, 370, 395, 407
BspANI GGCC 2 cut(s) 70, 368
BspCNI CTCAG 3 cut(s) 84, 152, 503
BspFNI CGCG 2 cut(s) 390, 392
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 1 cut(s) 319
BspPI GGATC 3 cut(s) 16, 524, 594
BspT107I GGYRCC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 276
BsrDI GCAATG 1 cut(s) 199
BssHII GCGCGC 2 cut(s) 388, 390
BssMI GATC 4 cut(s) 8, 529, 586, 610
Bst2UI CCWGG 1 cut(s) 654
Bst4CI ACNGT 1 cut(s) 544
BstAPI GCANNNNNTGC 1 cut(s) 194
BstC8I GCNNGC 6 cut(s) 82, 190, 345, 370, 390, 392
BstDEI CTNAG 3 cut(s) 92, 139, 490
BstFNI CGCG 2 cut(s) 390, 392
BstHHI GCGC 4 cut(s) 216, 390, 392, 394
BstKTI GATC 4 cut(s) 11, 532, 589, 613
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 4 cut(s) 8, 529, 586, 610
BstMWI GCNNNNNNNGC 8 cut(s) 161, 194, 211, 353, 374, 391, 394, 403
BstNI CCWGG 1 cut(s) 654
BstSCI CCNGG 1 cut(s) 652
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 174
BstUI CGCG 2 cut(s) 390, 392
BstV1I GCAGC 4 cut(s) 151, 284, 396, 397
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BsuRI GGCC 2 cut(s) 70, 368
BtsI GCAGTG 2 cut(s) 401, 552
BtsIMutI CAGTG 3 cut(s) 401, 549, 552
BveI ACCTGC 1 cut(s) 319
Cac8I GCNNGC 6 cut(s) 82, 190, 345, 370, 390, 392
CfoI GCGC 4 cut(s) 216, 390, 392, 394
Cfr13I GGNCC 2 cut(s) 68, 367
CseI GACGC 1 cut(s) 529
CviAII CATG 1 cut(s) 486
DdeI CTNAG 3 cut(s) 92, 139, 490
DpnI GATC 4 cut(s) 10, 531, 588, 612
DpnII GATC 4 cut(s) 8, 529, 586, 610
DraIII CACNNNGTG 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 599
Eco88I CYCGRG 1 cut(s) 627
EcoO109I RGGNCCY 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 652
EcoT22I ATGCAT 1 cut(s) 107
FaeI CATG 1 cut(s) 489
FaiI YATR 8 cut(s) 107, 119, 218, 261, 294, 360, 465, 487
FaqI GGGAC 1 cut(s) 445
FatI CATG 1 cut(s) 485
FauI CCCGC 1 cut(s) 377
Fnu4HI GCNGC 6 cut(s) 165, 298, 386, 395, 407, 410
Fsp4HI GCNGC 6 cut(s) 165, 298, 386, 395, 407, 410
FspBI CTAG 1 cut(s) 273
FspI TGCGCA 1 cut(s) 215
GlaI GCGC 4 cut(s) 215, 389, 391, 393
GluI GCNGC 6 cut(s) 165, 298, 386, 395, 407, 410
HaeIII GGCC 2 cut(s) 70, 368
HgaI GACGC 1 cut(s) 529
HhaI GCGC 4 cut(s) 216, 390, 392, 394
Hin1II CATG 1 cut(s) 489
Hin6I GCGC 4 cut(s) 214, 388, 390, 392
HinP1I GCGC 4 cut(s) 214, 388, 390, 392
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 137
HphI GGTGA 3 cut(s) 241, 307, 471
Hpy166II GTNNAC 2 cut(s) 172, 519
Hpy188I TCNGA 3 cut(s) 93, 142, 493
Hpy188III TCNNGA 2 cut(s) 590, 629
Hpy8I GTNNAC 2 cut(s) 172, 519
HpyAV CCTTC 3 cut(s) 329, 455, 684
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4V TGCA 9 cut(s) 84, 105, 117, 172, 188, 343, 377, 385, 557
HpyF10VI GCNNNNNNNGC 8 cut(s) 161, 194, 211, 353, 374, 391, 394, 403
HpyF3I CTNAG 3 cut(s) 92, 139, 490
Hsp92II CATG 1 cut(s) 489
HspAI GCGC 4 cut(s) 214, 388, 390, 392
Kzo9I GATC 4 cut(s) 8, 529, 586, 610
LmnI GCTCC 1 cut(s) 130
Lsp1109I GCAGC 4 cut(s) 151, 284, 396, 397
LweI GCATC 1 cut(s) 229
MaeI CTAG 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 247, 472
MalI GATC 4 cut(s) 10, 531, 588, 612
MboI GATC 4 cut(s) 8, 529, 586, 610
MboII GAAGA 2 cut(s) 605, 620
MflI RGATCY 1 cut(s) 610
MhlI GDGCHC 1 cut(s) 174
MluCI AATT 1 cut(s) 337
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 534
Mph1103I ATGCAT 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 612
MslI CAYNNNNRTG 2 cut(s) 468, 484
MspA1I CMGCKG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 1 cut(s) 654
MvnI CGCG 2 cut(s) 390, 392
MwoI GCNNNNNNNGC 8 cut(s) 161, 194, 211, 353, 374, 391, 394, 403
NdeII GATC 4 cut(s) 8, 529, 586, 610
NlaIII CATG 1 cut(s) 489
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 2 cut(s) 247, 472
NsbI TGCGCA 1 cut(s) 215
NsiI ATGCAT 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 627
PauI GCGCGC 2 cut(s) 388, 390
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PctI GAATGC 1 cut(s) 428
PdmI GAANNNNTTC 1 cut(s) 612
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 6 cut(s) 166, 299, 387, 396, 408, 411
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 652
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 68, 367
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 610
PsyI GACNNNGTC 1 cut(s) 287
PteI GCGCGC 2 cut(s) 388, 390
RseI CAYNNNNRTG 2 cut(s) 468, 484
SatI GCNGC 6 cut(s) 165, 298, 386, 395, 407, 410
Sau3AI GATC 4 cut(s) 8, 529, 586, 610
Sau96I GGNCC 2 cut(s) 68, 367
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 654
SduI GDGCHC 1 cut(s) 174
SetI ASST 8 cut(s) 55, 64, 207, 333, 383, 484, 628, 665
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 555
Sfr274I CTCGAG 1 cut(s) 627
SlaI CTCGAG 1 cut(s) 627
SmiMI CAYNNNNRTG 2 cut(s) 468, 484
SmlI CTYRAG 1 cut(s) 627
SmoI CTYRAG 1 cut(s) 627
Sse9I AATT 1 cut(s) 337
SsiI CCGC 4 cut(s) 167, 370, 395, 407
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 652
TaaI ACNGT 1 cut(s) 544
TaqI TCGA 6 cut(s) 135, 237, 420, 628, 643, 677
TasI AATT 1 cut(s) 337
TauI GCSGC 2 cut(s) 397, 409
TscAI CASTG 3 cut(s) 408, 549, 559
TseFI GTSAC 2 cut(s) 247, 472
TseI GCWGC 4 cut(s) 164, 297, 385, 409
Tsp45I GTSAC 2 cut(s) 247, 472
TspRI CASTG 3 cut(s) 408, 549, 559
Tth111I GACNNNGTC 1 cut(s) 287
VneI GTGCAC 1 cut(s) 170
XapI RAATTY 1 cut(s) 337
XhoI CTCGAG 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.