pycom02g16590

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0016115
Physical Location & Seq
Forward (+)
13794613 .. 13798120
3508 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16590.2

Sequence Viewer

Length: 684 bp
ATGAGTGGATCATCATCAAATGGAAACAATGATAATGGAGGAGGAGGCGGTCCTTGTGGTGCTTGCAAGTTCCTGAGGAGAAAGTGCATAAAAGGGTGCATATTTGCGCCGTACTTCGACGCAGAGCAAGGCACGGCGCACTTTGCTGCGGTGCACAAAGTGTTTGGTGCGAGCAACGCCTCAAAGCTTCTGTTGCGCATACCACCACACAAGCGGCTCGATGCTGTCGTCACCCTTTGCTATGAGGCTCTTGCTAGGGTTAGAGACCCTGTCTATGGCTGTGCTTCTCACATCTTCACTCTCCAACAGCAGGTAGTGAATTTGCAAGCAGAGTTAGCCTATGTTCAAGCCCGTCTTGGCACCTTGCAGCGTTTTCCGCTGCCGCCACAACCACCTCAGCTCGAAATCCCTCCGCCCACCAGAAGCCTTCAGTATTCCTCGTCCAATATTAATGTGACATCGTCATCGTCCTCAGATATGGTACCAACTCCCAACATATTGACGCATTGTGATCCTCTCCAAGCACCAAATACATCATCTGAAATGTCAAGCCTCTTCAACACAGAGGATCAAGAACTCATTGATGGTGAAAATCTGCAAGCACTGGCTCGAGAGTTCGTCTGCCGGTACTTGCCAGGAGTAAGGTTGAACAAGTCTTCCGGTTCTCATCATCAAAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

228

Amino Acids

24.64

Weight (kDa)

8.13

Isoelectric Point (pI)

63.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016115)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45410
fragaria_vesca FvH4_7g11980
malus_domestica MD02G1203000.v1.1
prunus_persica Prupe.2G146500_v2.0.a1
pyrus_communis pycom02g16590
rosa_chinensis RchiOBHm_Chr1g0350701
rosa_laevigata RLG00000028462
rosa_multiflora Rmu_sc0002150.1_g000004
rosa_roxburghii Rroxscaffold_4G00304590
rosa_rugosa Rorug01G0213200
rosa_samantha Rh1AG227500 Rh1BG197000 Rh1CG212400 Rh1DG224900
rosa_wichuraiana Rw1G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 301
Acc65I GGTACC 1 cut(s) 481
AccB1I GGYRCC 2 cut(s) 359, 481
AciI CCGC 6 cut(s) 48, 149, 214, 377, 383, 413
AclWI GGATC 3 cut(s) 16, 506, 576
AcsI RAATTY 2 cut(s) 319, 676
AcuI CTGAAG 1 cut(s) 413
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 3 cut(s) 113, 483, 629
AfiI CCNNNNNNNGG 2 cut(s) 275, 310
AgsI TTSAA 3 cut(s) 347, 559, 649
AjnI CCWGG 1 cut(s) 634
AloI GAACNNNNNNTCC 2 cut(s) 641, 673
AluBI AGCT 2 cut(s) 187, 400
AluI AGCT 2 cut(s) 187, 400
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 258
Alw44I GTGCAC 1 cut(s) 152
AlwI GGATC 3 cut(s) 16, 506, 576
Ama87I CYCGRG 1 cut(s) 609
ApaLI GTGCAC 1 cut(s) 152
ApeKI GCWGC 3 cut(s) 146, 367, 379
ApoI RAATTY 2 cut(s) 319, 676
AseI ATTAAT 1 cut(s) 450
Asp718I GGTACC 1 cut(s) 481
AspLEI GCGC 3 cut(s) 109, 139, 198
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 223, 599
AvaI CYCGRG 1 cut(s) 609
AvaII GGWCC 1 cut(s) 50
AxyI CCTNAGG 1 cut(s) 74
BaeGI GKGCMC 1 cut(s) 156
BanI GGYRCC 2 cut(s) 359, 481
BbsI GAAGAC 1 cut(s) 648
Bbv12I GWGCWC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 133, 366, 379
BccI CCATC 1 cut(s) 578
BceAI ACGGC 2 cut(s) 94, 150
BciT130I CCWGG 1 cut(s) 636
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 301
BisI GCNGC 5 cut(s) 147, 215, 368, 380, 383
BlsI GCNGC 5 cut(s) 148, 216, 369, 381, 384
Bme1390I CCNGG 1 cut(s) 636
Bme18I GGWCC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 609
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 361, 483
BmrFI CCNGG 1 cut(s) 636
BmsI GCATC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 648
Bpu10I CCTNAGC 1 cut(s) 396
BsaBI GATNNNNATC 1 cut(s) 13
BsaI GGTCTC 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 310
Bse118I RCCGGY 1 cut(s) 624
Bse1I ACTGG 1 cut(s) 609
Bse21I CCTNAGG 1 cut(s) 74
Bse8I GATNNNNATC 1 cut(s) 13
BseBI CCWGG 1 cut(s) 636
BseJI GATNNNNATC 1 cut(s) 13
BseLI CCNNNNNNNGG 2 cut(s) 275, 310
BseMII CTCAG 3 cut(s) 65, 410, 486
BseNI ACTGG 1 cut(s) 609
BseRI GAGGAG 3 cut(s) 54, 57, 91
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 3 cut(s) 133, 366, 379
BshNI GGYRCC 2 cut(s) 359, 481
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 609
BsiSI CCGG 2 cut(s) 625, 660
BslI CCNNNNNNNGG 2 cut(s) 275, 310
BsmAI GTCTC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 609
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 3 cut(s) 8, 511, 568
BspACI CCGC 6 cut(s) 48, 149, 214, 377, 383, 413
BspCNI CTCAG 3 cut(s) 66, 409, 485
BspLI GGNNCC 2 cut(s) 361, 483
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 3 cut(s) 16, 506, 576
BspT107I GGYRCC 2 cut(s) 359, 481
BspTNI GGTCTC 1 cut(s) 258
BsrFI RCCGGY 1 cut(s) 624
BsrI ACTGG 1 cut(s) 609
BssAI RCCGGY 1 cut(s) 624
BssMI GATC 3 cut(s) 8, 511, 568
Bst2UI CCWGG 1 cut(s) 636
Bst6I CTCTTC 1 cut(s) 560
BstC8I GCNNGC 4 cut(s) 64, 172, 327, 600
BstDEI CTNAG 3 cut(s) 74, 396, 472
BstHHI GCGC 3 cut(s) 109, 139, 198
BstKTI GATC 3 cut(s) 11, 514, 571
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 3 cut(s) 8, 511, 568
BstMWI GCNNNNNNNGC 5 cut(s) 143, 176, 193, 335, 376
BstNI CCWGG 1 cut(s) 636
BstSCI CCNGG 1 cut(s) 634
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 3 cut(s) 133, 366, 379
BstV2I GAAGAC 1 cut(s) 648
Bsu36I CCTNAGG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 602
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 4 cut(s) 64, 172, 327, 600
CfoI GCGC 3 cut(s) 109, 139, 198
Cfr10I RCCGGY 1 cut(s) 624
Cfr13I GGNCC 1 cut(s) 50
CseI GACGC 2 cut(s) 128, 511
Csp6I GTAC 3 cut(s) 112, 482, 628
CviQI GTAC 3 cut(s) 112, 482, 628
DdeI CTNAG 3 cut(s) 74, 396, 472
DpnI GATC 3 cut(s) 10, 513, 570
DpnII GATC 3 cut(s) 8, 511, 568
DraIII CACNNNGTG 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 560
EarI CTCTTC 1 cut(s) 560
EciI GGCGGA 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 413
Eco81I CCTNAGG 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 634
FaiI YATR 8 cut(s) 89, 101, 200, 243, 276, 342, 479, 497
FalI AAGNNNNNCTT 2 cut(s) 339, 371
Fnu4HI GCNGC 5 cut(s) 147, 215, 368, 380, 383
Fsp4HI GCNGC 5 cut(s) 147, 215, 368, 380, 383
FspBI CTAG 1 cut(s) 255
FspI TGCGCA 1 cut(s) 197
GlaI GCGC 3 cut(s) 108, 138, 197
GluI GCNGC 5 cut(s) 147, 215, 368, 380, 383
HapII CCGG 2 cut(s) 625, 660
HgaI GACGC 2 cut(s) 128, 511
HhaI GCGC 3 cut(s) 109, 139, 198
Hin6I GCGC 3 cut(s) 107, 137, 196
HinP1I GCGC 3 cut(s) 107, 137, 196
HindIII AAGCTT 1 cut(s) 185
HpaII CCGG 2 cut(s) 625, 660
HphI GGTGA 2 cut(s) 223, 599
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 475, 541
Hpy188III TCNNGA 3 cut(s) 73, 572, 611
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 437
HpyCH4V TGCA 7 cut(s) 66, 87, 99, 154, 325, 367, 598
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 176, 193, 335, 376
HpyF3I CTNAG 3 cut(s) 74, 396, 472
HspAI GCGC 3 cut(s) 107, 137, 196
KpnI GGTACC 1 cut(s) 485
Kzo9I GATC 3 cut(s) 8, 511, 568
LpnPI CCDG 9 cut(s) 86, 282, 296, 433, 590, 621, 638, 648, 673
Lsp1109I GCAGC 3 cut(s) 133, 366, 379
LweI GCATC 1 cut(s) 211
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 229, 454
MalI GATC 3 cut(s) 10, 513, 570
MboI GATC 3 cut(s) 8, 511, 568
MboII GAAGA 3 cut(s) 286, 547, 648
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 319, 676
MmeI TCCRAC 1 cut(s) 328
MseI TTAA 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 2 cut(s) 625, 660
MspR9I CCNGG 1 cut(s) 636
MvaI CCWGG 1 cut(s) 636
MwoI GCNNNNNNNGC 5 cut(s) 143, 176, 193, 335, 376
NdeII GATC 3 cut(s) 8, 511, 568
NlaIV GGNNCC 2 cut(s) 361, 483
NmuCI GTSAC 2 cut(s) 229, 454
NsbI TGCGCA 1 cut(s) 197
PaeR7I CTCGAG 1 cut(s) 609
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PflFI GACNNNGTC 2 cut(s) 269, 460
PkrI GCNGC 5 cut(s) 148, 216, 369, 381, 384
PshBI ATTAAT 1 cut(s) 450
Psp6I CCWGG 1 cut(s) 634
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 2 cut(s) 361, 483
PspPI GGNCC 1 cut(s) 50
PsyI GACNNNGTC 2 cut(s) 269, 460
RsaI GTAC 3 cut(s) 113, 483, 629
RsaNI GTAC 3 cut(s) 112, 482, 628
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 5 cut(s) 147, 215, 368, 380, 383
Sau3AI GATC 3 cut(s) 8, 511, 568
Sau96I GGNCC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 636
SduI GDGCHC 1 cut(s) 156
SetI ASST 6 cut(s) 189, 315, 365, 397, 402, 647
SfaNI GCATC 1 cut(s) 211
Sfr274I CTCGAG 1 cut(s) 609
SinI GGWCC 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 609
SmlI CTYRAG 1 cut(s) 609
SmoI CTYRAG 1 cut(s) 609
Sse9I AATT 2 cut(s) 319, 676
SsiI CCGC 6 cut(s) 48, 149, 214, 377, 383, 413
SspI AATATT 1 cut(s) 448
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 634
TaqI TCGA 4 cut(s) 117, 219, 402, 610
TasI AATT 2 cut(s) 319, 676
TauI GCSGC 2 cut(s) 217, 385
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 1 cut(s) 609
TseFI GTSAC 2 cut(s) 229, 454
TseI GCWGC 3 cut(s) 146, 367, 379
Tsp45I GTSAC 2 cut(s) 229, 454
TspRI CASTG 1 cut(s) 609
Tth111I GACNNNGTC 2 cut(s) 269, 460
VneI GTGCAC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 50
VspI ATTAAT 1 cut(s) 450
XapI RAATTY 2 cut(s) 319, 676
XhoI CTCGAG 1 cut(s) 609
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.