AT2G45680
TCP Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015863
Physical Location & Seq
Reverse (-)
18820242 .. 18821889
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45680.1

Sequence Viewer

Length: 1071 bp
ATGGCGACAATTCAGAAGCTTGAAGAAGTTGCAGGCAAAGATCAAACTCTAAGAGCCGTTGATCTAACCATCATCAACGGCGTCAGAAACGTCGAAACTTCAAGACCTTTCCAAGTAAATCCCACAGTGAGTCTCGAGCCCAAGGCGGAGCCGGTGATGCCGTCGTTTTCAATGTCTTTAGCTCCACCGTCTTCGACAGGACCACCATTGAAGAGAGCTTCGACTAAAGACCGTCACACGAAGGTTGAAGGAAGAGGGAGAAGGATACGGATGCCTGCCACGTGTGCGGCTAGGATTTTTCAATTAACTCGAGAGTTAGGTCACAAATCCGACGGCGAAACGATTCGGTGGTTGTTGGAGAACGCTGAGCCGGCGATTATAGCCGCCACGGGTACGGGAACGGTTCCCGCCATCGCCATGTCGGTTAACGGAACCTTAAAAATCCCGACGACGACGAACGCTGATTCTGATATGGGTGAAAATCTGATGAAGAAGAAACGTAAACGACCTTCTAACAGTGAGTATATAGACATAAGCGACGCCGTTTCAGCTTCCTCCGGTTTAGCTCCAATTGCCACGACGACAACGATCCAACCTCCGCAAGCTCTGGCATCATCCACTGTGGCTCAGCAACTTCTGCCGCAAGGAATGTATCCGATGTGGGCTATTCCATCAAACGCAATGATTCCGACGGTCGGAGCTTTCTTCTTGATTCCACAAATCGCTGGTCCGTCGAATCAGCCTCAGTTATTAGCTTTTCCCGCCGCCGCTGCTTCGCCGTCGTCTTACGTCGCCGCTGTTCAACAGGCTTCCACGATGGCTAGACCACCTCCTTTACAAGTTGTTCCAAGCAGCGGCTTTGTATCCGTTTCAGACGTTAGCGGTTCGAATTTATCAAGAGCGACGTCGGTTATGGCTCCGAGCTCAAGCTCAGGCGTAACAACCGGTAGTTCATCGTCAATTGCAACAACAACGACGCACACGCTGAGAGACTTCTCCCTAGAGATATACGAGAAACAAGAGCTTCACCAGTTCATGAGCACCACAACAGCACGGTCATCGAACCACTGA

Protein Analysis

356

Amino Acids

37.63

Weight (kDa)

9.51

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 74 - 151 2.7e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45680
fragaria_vesca FvH4_7g12810
malus_domestica MD02G1196100.v1.1
prunus_persica Prupe.2G152600_v2.0.a1
pyrus_communis pycom02g15980
rosa_chinensis RchiOBHm_Chr1g0351841
rosa_laevigata RLG00000028378
rosa_multiflora Rmu_co8473567.1_g000001 Rmu_sc0001933.1_g000007
rosa_rugosa Rorug01G0222200
rosa_samantha Rh1AG236100 Rh1BG206600 Rh1CG220600 Rh1DG233600
rosa_wichuraiana Rw1G020550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 908
AclWI GGATC 1 cut(s) 583
AcsI RAATTY 1 cut(s) 889
AcvI CACGTG 1 cut(s) 282
AcyI GRCGYC 3 cut(s) 81, 540, 905
AfaI GTAC 1 cut(s) 394
AfiI CCNNNNNNNGG 2 cut(s) 695, 854
AflIII ACRYGT 1 cut(s) 281
AgeI ACCGGT 1 cut(s) 944
AgsI TTSAA 7 cut(s) 23, 102, 171, 211, 248, 302, 803
Alw21I GWGCWC 2 cut(s) 926, 1043
Alw26I GTCTC 2 cut(s) 137, 984
AlwI GGATC 1 cut(s) 583
Ama87I CYCGRG 2 cut(s) 134, 309
ApeKI GCWGC 2 cut(s) 770, 852
ApoI RAATTY 1 cut(s) 889
ArsI GACNNNNNNTTYG 2 cut(s) 712, 744
AsiGI ACCGGT 1 cut(s) 944
Asp700I GAANNNNTTC 1 cut(s) 342
AspS9I GGNCC 2 cut(s) 200, 728
AsuHPI GGTGA 3 cut(s) 166, 488, 1019
AsuII TTCGAA 1 cut(s) 887
AvaI CYCGRG 2 cut(s) 134, 309
AvaII GGWCC 2 cut(s) 200, 728
BanII GRGCYC 2 cut(s) 141, 926
BarI GAAGNNNNNNTAC 2 cut(s) 493, 525
BbrPI CACGTG 1 cut(s) 282
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 2 cut(s) 926, 1043
BbvI GCAGC 2 cut(s) 757, 864
BccI CCATC 4 cut(s) 77, 419, 679, 811
BceAI ACGGC 6 cut(s) 41, 94, 145, 349, 527, 763
BcgI CGANNNNNNTGC 1 cut(s) 1041
BciVI GTATCC 3 cut(s) 258, 663, 874
BcoDI GTCTC 2 cut(s) 137, 984
BfaI CTAG 3 cut(s) 291, 822, 1001
BfuI GTATCC 3 cut(s) 258, 663, 874
BisI GCNGC 9 cut(s) 288, 384, 641, 765, 768, 771, 795, 853, 856
BlpI GCTNAGC 2 cut(s) 366, 627
BlsI GCNGC 9 cut(s) 289, 385, 642, 766, 769, 772, 796, 854, 857
Bme18I GGWCC 2 cut(s) 200, 728
BmeT110I CYCGRG 2 cut(s) 134, 309
BmgT120I GGNCC 2 cut(s) 200, 728
BmiI GGNNCC 4 cut(s) 150, 405, 433, 918
BmsI GCATC 3 cut(s) 147, 261, 620
BpiI GAAGAC 1 cut(s) 183
Bpu10I CCTNAGC 1 cut(s) 931
Bpu1102I GCTNAGC 2 cut(s) 366, 627
Bpu14I TTCGAA 1 cut(s) 887
BpuEI CTTGAG 1 cut(s) 910
BsaAI YACGTR 1 cut(s) 282
BsaHI GRCGYC 3 cut(s) 81, 540, 905
BsaJI CCNNGG 2 cut(s) 141, 387
BsaWI WCCGGW 2 cut(s) 557, 944
Bsc4I CCNNNNNNNGG 2 cut(s) 695, 854
Bse118I RCCGGY 3 cut(s) 151, 370, 944
Bse1I ACTGG 1 cut(s) 1030
Bse3DI GCAATG 1 cut(s) 687
BseDI CCNNGG 2 cut(s) 141, 387
BseGI GGATG 2 cut(s) 276, 614
BseLI CCNNNNNNNGG 2 cut(s) 695, 854
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 5 cut(s) 357, 641, 758, 945, 977
BseNI ACTGG 1 cut(s) 1030
BseXI GCAGC 2 cut(s) 757, 864
Bsh1285I CGRYCG 1 cut(s) 696
BshTI ACCGGT 1 cut(s) 944
BsiEI CGRYCG 1 cut(s) 696
BsiHKAI GWGCWC 2 cut(s) 926, 1043
BsiHKCI CYCGRG 2 cut(s) 134, 309
BsiSI CCGG 4 cut(s) 152, 371, 558, 945
BslI CCNNNNNNNGG 2 cut(s) 695, 854
BsmAI GTCTC 2 cut(s) 137, 984
BsoBI CYCGRG 2 cut(s) 134, 309
Bsp119I TTCGAA 1 cut(s) 887
Bsp1286I GDGCHC 3 cut(s) 141, 926, 1043
Bsp143I GATC 3 cut(s) 40, 61, 588
Bsp1720I GCTNAGC 2 cut(s) 366, 627
BspCNI CTCAG 5 cut(s) 358, 640, 757, 944, 978
BspHI TCATGA 1 cut(s) 1035
BspLI GGNNCC 4 cut(s) 150, 405, 433, 918
BspPI GGATC 1 cut(s) 583
BspT104I TTCGAA 1 cut(s) 887
BsrDI GCAATG 1 cut(s) 687
BsrFI RCCGGY 3 cut(s) 151, 370, 944
BsrI ACTGG 1 cut(s) 1030
BssAI RCCGGY 3 cut(s) 151, 370, 944
BssECI CCNNGG 2 cut(s) 141, 387
BssMI GATC 3 cut(s) 40, 61, 588
BssNI GRCGYC 3 cut(s) 81, 540, 905
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 8 cut(s) 127, 189, 233, 403, 518, 622, 694, 1056
Bst6I CTCTTC 2 cut(s) 206, 247
BstACI GRCGYC 3 cut(s) 81, 540, 905
BstAPI GCANNNNNTGC 1 cut(s) 637
BstBAI YACGTR 1 cut(s) 282
BstBI TTCGAA 1 cut(s) 887
BstC8I GCNNGC 4 cut(s) 34, 276, 372, 603
BstDEI CTNAG 6 cut(s) 50, 366, 627, 744, 931, 986
BstDSI CCRYGG 1 cut(s) 387
BstF5I GGATG 2 cut(s) 276, 614
BstKTI GATC 3 cut(s) 43, 64, 591
BstMAI GTCTC 2 cut(s) 137, 984
BstMBI GATC 3 cut(s) 40, 61, 588
BstMCI CGRYCG 1 cut(s) 696
BstMWI GCNNNNNNNGC 9 cut(s) 157, 284, 371, 380, 548, 572, 637, 761, 770
BstV1I GCAGC 2 cut(s) 757, 864
BstV2I GAAGAC 1 cut(s) 183
BsuI GTATCC 3 cut(s) 258, 663, 874
BtgI CCRYGG 1 cut(s) 387
BtgZI GCGATG 1 cut(s) 397
BtsCI GGATG 2 cut(s) 276, 614
BtsIMutI CAGTG 4 cut(s) 132, 523, 618, 1066
Cac8I GCNNGC 4 cut(s) 34, 276, 372, 603
CciI TCATGA 1 cut(s) 1035
Cfr10I RCCGGY 3 cut(s) 151, 370, 944
Cfr13I GGNCC 2 cut(s) 200, 728
CseI GACGC 3 cut(s) 70, 548, 985
Csp6I GTAC 1 cut(s) 393
CspAI ACCGGT 1 cut(s) 944
CviAII CATG 2 cut(s) 418, 1036
CviQI GTAC 1 cut(s) 393
DdeI CTNAG 6 cut(s) 50, 366, 627, 744, 931, 986
DpnI GATC 3 cut(s) 42, 63, 590
DpnII GATC 3 cut(s) 40, 61, 588
Eam1104I CTCTTC 2 cut(s) 206, 247
EarI CTCTTC 2 cut(s) 206, 247
EciI GGCGGA 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 924
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 141, 926
Eco47I GGWCC 2 cut(s) 200, 728
Eco53kI GAGCTC 1 cut(s) 924
Eco72I CACGTG 1 cut(s) 282
Eco88I CYCGRG 2 cut(s) 134, 309
EcoICRI GAGCTC 1 cut(s) 924
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 141, 926
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 421, 1039
FaiI YATR 9 cut(s) 380, 419, 473, 525, 527, 533, 914, 1009, 1037
FatI CATG 2 cut(s) 417, 1035
FauI CCCGC 2 cut(s) 415, 769
Fnu4HI GCNGC 9 cut(s) 288, 384, 641, 765, 768, 771, 795, 853, 856
FokI GGATG 2 cut(s) 283, 601
FriOI GRGCYC 2 cut(s) 141, 926
Fsp4HI GCNGC 9 cut(s) 288, 384, 641, 765, 768, 771, 795, 853, 856
FspBI CTAG 3 cut(s) 291, 822, 1001
GluI GCNGC 9 cut(s) 288, 384, 641, 765, 768, 771, 795, 853, 856
HapII CCGG 4 cut(s) 152, 371, 558, 945
HgaI GACGC 3 cut(s) 70, 548, 985
Hin1I GRCGYC 3 cut(s) 81, 540, 905
Hin1II CATG 2 cut(s) 421, 1039
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 6 cut(s) 130, 343, 464, 685, 712, 736
HpaI GTTAAC 1 cut(s) 427
HpaII CCGG 4 cut(s) 152, 371, 558, 945
HphI GGTGA 3 cut(s) 166, 488, 1019
Hpy166II GTNNAC 2 cut(s) 427, 503
Hpy188III TCNNGA 7 cut(s) 102, 134, 311, 445, 709, 897, 1036
Hpy8I GTNNAC 2 cut(s) 427, 503
HpyAV CCTTC 4 cut(s) 235, 242, 255, 519
HpyCH4III ACNGT 8 cut(s) 127, 189, 233, 403, 518, 622, 694, 1056
HpyCH4IV ACGT 6 cut(s) 90, 281, 499, 789, 876, 905
HpyCH4V TGCA 2 cut(s) 32, 965
HpyF10VI GCNNNNNNNGC 9 cut(s) 157, 284, 371, 380, 548, 572, 637, 761, 770
HpyF3I CTNAG 6 cut(s) 50, 366, 627, 744, 931, 986
HpySE526I ACGT 6 cut(s) 90, 281, 499, 789, 876, 905
Hsp92I GRCGYC 3 cut(s) 81, 540, 905
Hsp92II CATG 2 cut(s) 421, 1039
KroI GCCGGC 1 cut(s) 370
KroNI GCCGGC 1 cut(s) 372
KspAI GTTAAC 1 cut(s) 427
Kzo9I GATC 3 cut(s) 40, 61, 588
LmnI GCTCC 5 cut(s) 148, 187, 571, 698, 922
Lsp1109I GCAGC 2 cut(s) 757, 864
LweI GCATC 3 cut(s) 147, 261, 620
MaeI CTAG 3 cut(s) 291, 822, 1001
MaeII ACGT 6 cut(s) 90, 281, 499, 789, 876, 905
MaeIII GTNAC 3 cut(s) 233, 320, 937
MalI GATC 3 cut(s) 42, 63, 590
MboI GATC 3 cut(s) 40, 61, 588
MboII GAAGA 7 cut(s) 35, 183, 223, 264, 502, 505, 697
MfeI CAATTG 2 cut(s) 570, 960
MhlI GDGCHC 3 cut(s) 141, 926, 1043
MluCI AATT 5 cut(s) 9, 302, 570, 889, 960
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 5 cut(s) 336, 354, 616, 676, 713
MnlI CCTC 5 cut(s) 248, 565, 606, 753, 840
MroNI GCCGGC 1 cut(s) 370
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 3 cut(s) 305, 426, 437
MslI CAYNNNNRTG 1 cut(s) 416
MspA1I CMGCKG 3 cut(s) 770, 797, 855
MspI CCGG 4 cut(s) 152, 371, 558, 945
MunI CAATTG 2 cut(s) 570, 960
MwoI GCNNNNNNNGC 9 cut(s) 157, 284, 371, 380, 548, 572, 637, 761, 770
NaeI GCCGGC 1 cut(s) 372
NdeII GATC 3 cut(s) 40, 61, 588
NgoMIV GCCGGC 1 cut(s) 370
NlaIII CATG 2 cut(s) 421, 1039
NlaIV GGNNCC 4 cut(s) 150, 405, 433, 918
NmuCI GTSAC 2 cut(s) 233, 320
NspV TTCGAA 1 cut(s) 887
PaeR7I CTCGAG 2 cut(s) 134, 309
PagI TCATGA 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 584
PdiI GCCGGC 1 cut(s) 372
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 5 cut(s) 343, 464, 685, 712, 736
PinAI ACCGGT 1 cut(s) 944
PkrI GCNGC 9 cut(s) 289, 385, 642, 766, 769, 772, 796, 854, 857
PleI GAGTC 1 cut(s) 138
PmaCI CACGTG 1 cut(s) 282
PmlI CACGTG 1 cut(s) 282
PpsI GAGTC 1 cut(s) 138
Ppu21I YACGTR 1 cut(s) 282
Psp124BI GAGCTC 1 cut(s) 926
PspCI CACGTG 1 cut(s) 282
PspN4I GGNNCC 4 cut(s) 150, 405, 433, 918
PspPI GGNCC 2 cut(s) 200, 728
RsaI GTAC 1 cut(s) 394
RsaNI GTAC 1 cut(s) 393
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 926
SaqAI TTAA 3 cut(s) 305, 426, 437
SatI GCNGC 9 cut(s) 288, 384, 641, 765, 768, 771, 795, 853, 856
Sau3AI GATC 3 cut(s) 40, 61, 588
Sau96I GGNCC 2 cut(s) 200, 728
SchI GAGTC 1 cut(s) 139
SduI GDGCHC 3 cut(s) 141, 926, 1043
SfaNI GCATC 3 cut(s) 147, 261, 620
Sfr274I CTCGAG 2 cut(s) 134, 309
SfuI TTCGAA 1 cut(s) 887
SinI GGWCC 2 cut(s) 200, 728
SlaI CTCGAG 2 cut(s) 134, 309
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 3 cut(s) 134, 309, 925
SmoI CTYRAG 3 cut(s) 134, 309, 925
Sse9I AATT 5 cut(s) 9, 302, 570, 889, 960
SspMI CTAG 3 cut(s) 291, 822, 1001
SstI GAGCTC 1 cut(s) 926
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 8 cut(s) 127, 189, 233, 403, 518, 622, 694, 1056
TaiI ACGT 6 cut(s) 93, 284, 502, 792, 879, 908
TaqI TCGA 8 cut(s) 93, 135, 194, 221, 310, 734, 887, 1061
TasI AATT 5 cut(s) 9, 302, 570, 889, 960
TauI GCSGC 7 cut(s) 290, 386, 643, 767, 770, 797, 858
TfiI GAWTC 5 cut(s) 343, 464, 685, 712, 736
Tru1I TTAA 3 cut(s) 305, 426, 437
Tru9I TTAA 3 cut(s) 305, 426, 437
TscAI CASTG 3 cut(s) 132, 523, 625
TseFI GTSAC 2 cut(s) 233, 320
TseI GCWGC 2 cut(s) 770, 852
Tsp45I GTSAC 2 cut(s) 233, 320
TspDTI ATGAA 3 cut(s) 503, 942, 1024
TspGWI ACGGA 4 cut(s) 283, 444, 720, 856
TspRI CASTG 3 cut(s) 132, 523, 625
VpaK11BI GGWCC 2 cut(s) 200, 728
XapI RAATTY 1 cut(s) 889
XhoI CTCGAG 2 cut(s) 134, 309
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 3 cut(s) 291, 822, 1001
ZraI GACGTC 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.