Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0015863

Physical Location & Seq

Genomic Coordinates Reverse (-)

44657427 .. 44659193

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG233600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCTTCAAAACCAAGAATTTGAACCCGGCCAACACACCACAGCCGCCGCAGGAGTGGACCCCACCGACCGCGCCGAGACCGATTCTCCGCCGTCTCAGGCTCTTATCCTGAAGGAAGAGCAAGAGCCCGAGCAGAGGTCGCCGGCTCTGACTATGGCGGTGAGCAAGCCGAAACGGTCGTCGACGAAGGACCGGCACACGAAGGTTGAGGGCCGCGGCCGGAGGATCCGAATGCCCGCCACGTGCGCGGCCCGGATCTTCCAGCTGACCCGGGAGCTCGGGCACAAGTCCGACGGCGAGACCATCCGGTGGCTGCTGGAGCACGCCGAGCCGGCGATAATAGCCGCCACCGGCACCGGAACCGTCCCGGCAATCGCCATGTCCGTCAACGGGTCCCTCAAAATCCCAACCACCGCGCCCGACCCGAAACCCGGCGACCCGTCGAAGAAACGCAAACGTCCTTGCAATAGCGACTACGTGGACCTAAACGACAGCGTTTCGGCTGGCCTGGCTCCTCTGACCGCCACCACCCTCCAACAACCGACACCTCCGCCACCGCCACAGCCGGTTCACCAAAGCATGGTCCCCATGTGGGCCGTGACCTCAAACGGCGTGGTTCCGGGGACCTTCTTCATGGTCCCTCAAACGCAGGCGCCCCACCTATTTACATTCCCGGCCACCGCCGCCGCCTCGCCTTTCCTCAACATGTCGGCCCGGCCCATCTCCTCCTTCGTCTCCTCCATGGGCAACGTCGTCACTCCGGTCTCCAATACGCTGTCGTTTCTGTCCCCCGTTCCGATTCCCCCAGCCTCCGCCACCATAACGAACAGCACCGACGCGACGACCACCACCCTCCGAGACTTCTCGCTGGAAATCCGCGACAAAACGGAGCTCCAATTCATGTCCGGGTCGTCGAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008361 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048519 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0090066 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

307

Amino Acids

32.88

Weight (kDa)

8.57

Isoelectric Point (pI)

62.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	61 - 132	5.9e-26	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45680
fragaria_vesca	FvH4_7g12810
malus_domestica	MD02G1196100.v1.1
prunus_persica	Prupe.2G152600_v2.0.a1
pyrus_communis	pycom02g15980
rosa_chinensis	RchiOBHm_Chr1g0351841
rosa_laevigata	RLG00000028378
rosa_multiflora	Rmu_co8473567.1_g000001 Rmu_sc0001933.1_g000007
rosa_rugosa	Rorug01G0222200
rosa_samantha	Rh1AG236100 Rh1BG206600 Rh1CG220600 Rh1DG233600
rosa_wichuraiana	Rw1G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	353, 652
AccB7I	CCANNNNNTGG	2 cut(s)	309, 580
AccI	GTMKAC	1 cut(s)	182
AccII	CGCG	6 cut(s)	72, 216, 248, 416, 839, 879
AclWI	GGATC	3 cut(s)	220, 233, 263
AcoI	YGGCCR	3 cut(s)	28, 217, 675
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	131
AcvI	CACGTG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	653
AfiI	CCNNNNNNNGG	6 cut(s)	135, 309, 390, 431, 580, 592
AflIII	ACRYGT	1 cut(s)	705
AgsI	TTSAA	2 cut(s)	8, 23
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	3 cut(s)	265, 277, 892
AluI	AGCT	3 cut(s)	265, 277, 892
Alw21I	GWGCWC	3 cut(s)	279, 324, 894
Alw26I	GTCTC	6 cut(s)	71, 99, 293, 739, 769, 852
AlwI	GGATC	3 cut(s)	220, 233, 263
Ama87I	CYCGRG	3 cut(s)	128, 270, 278
AoxI	GGCC	9 cut(s)	28, 211, 217, 249, 505, 594, 675, 711, 716
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	17
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	4 cut(s)	74, 248, 418, 655
AsuHPI	GGTGA	2 cut(s)	172, 563
AvaI	CYCGRG	3 cut(s)	128, 270, 278
AvaII	GGWCC	7 cut(s)	58, 190, 393, 481, 583, 624, 637
BaeGI	GKGCMC	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	225
BanI	GGYRCC	2 cut(s)	353, 652
BanII	GRGCYC	3 cut(s)	129, 279, 894
BbrPI	CACGTG	1 cut(s)	243
Bbv12I	GWGCWC	3 cut(s)	279, 324, 894
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	2 cut(s)	311, 728
BceAI	ACGGC	4 cut(s)	76, 310, 581, 625
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	6 cut(s)	71, 99, 293, 739, 769, 852
BfoI	RGCGCY	1 cut(s)	656
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	9 cut(s)	45, 48, 214, 217, 249, 314, 345, 684, 687
BlsI	GCNGC	9 cut(s)	46, 49, 215, 218, 250, 315, 346, 685, 688
Bme18I	GGWCC	7 cut(s)	58, 190, 393, 481, 583, 624, 637
BmeT110I	CYCGRG	3 cut(s)	128, 270, 278
BpmI	CTGGAG	1 cut(s)	338
BsaAI	YACGTR	2 cut(s)	243, 478
BsaHI	GRCGYC	1 cut(s)	653
BsaI	GGTCTC	3 cut(s)	71, 293, 769
BsaJI	CCNNGG	4 cut(s)	214, 270, 620, 741
BsaWI	WCCGGW	3 cut(s)	306, 356, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	6 cut(s)	135, 309, 390, 431, 580, 592
Bse118I	RCCGGY	5 cut(s)	142, 192, 331, 350, 565
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	4 cut(s)	214, 270, 620, 741
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	6 cut(s)	135, 309, 390, 431, 580, 592
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	3 cut(s)	504, 715, 727
BseSI	GKGCMC	1 cut(s)	285
BseX3I	CGGCCG	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	300
BseYI	CCCAGC	1 cut(s)	805
Bsh1236I	CGCG	6 cut(s)	72, 216, 248, 416, 839, 879
Bsh1285I	CGRYCG	3 cut(s)	70, 179, 220
BshFI	GGCC	9 cut(s)	30, 213, 219, 251, 507, 596, 677, 713, 718
BshNI	GGYRCC	2 cut(s)	353, 652
BsiEI	CGRYCG	3 cut(s)	70, 179, 220
BsiHKAI	GWGCWC	3 cut(s)	279, 324, 894
BsiHKCI	CYCGRG	3 cut(s)	128, 270, 278
BslFI	GGGAC	6 cut(s)	350, 379, 569, 623, 637, 772
BslI	CCNNNNNNNGG	6 cut(s)	135, 309, 390, 431, 580, 592
BsmAI	GTCTC	6 cut(s)	71, 99, 293, 739, 769, 852
BsmBI	CGTCTC	2 cut(s)	99, 739
BsmFI	GGGAC	6 cut(s)	350, 379, 569, 623, 637, 772
BsmI	GAATGC	1 cut(s)	237
BsnI	GGCC	9 cut(s)	30, 213, 219, 251, 507, 596, 677, 713, 718
Bso31I	GGTCTC	3 cut(s)	71, 293, 769
BsoBI	CYCGRG	3 cut(s)	128, 270, 278
Bsp1286I	GDGCHC	5 cut(s)	129, 279, 285, 324, 894
Bsp143I	GATC	2 cut(s)	225, 255
Bsp19I	CCATGG	1 cut(s)	741
BspANI	GGCC	9 cut(s)	30, 213, 219, 251, 507, 596, 677, 713, 718
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	6 cut(s)	72, 216, 248, 416, 839, 879
BspPI	GGATC	3 cut(s)	220, 233, 263
BspQI	GCTCTTC	1 cut(s)	111
BspT107I	GGYRCC	2 cut(s)	353, 652
BspTNI	GGTCTC	3 cut(s)	71, 293, 769
BsrFI	RCCGGY	5 cut(s)	142, 192, 331, 350, 565
BssAI	RCCGGY	5 cut(s)	142, 192, 331, 350, 565
BssECI	CCNNGG	4 cut(s)	214, 270, 620, 741
BssMI	GATC	2 cut(s)	225, 255
BssNI	GRCGYC	1 cut(s)	653
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	177, 364
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	1 cut(s)	653
BstBAI	YACGTR	2 cut(s)	243, 478
BstC8I	GCNNGC	7 cut(s)	144, 167, 237, 324, 333, 505, 651
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	2 cut(s)	214, 741
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	6 cut(s)	72, 216, 248, 416, 839, 879
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	4 cut(s)	74, 248, 418, 655
BstKTI	GATC	2 cut(s)	228, 258
BstMAI	GTCTC	6 cut(s)	71, 99, 293, 739, 769, 852
BstMBI	GATC	2 cut(s)	225, 255
BstMCI	CGRYCG	3 cut(s)	70, 179, 220
BstMWI	GCNNNNNNNGC	8 cut(s)	139, 245, 319, 328, 332, 341, 509, 683
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	709
BstSLI	GKGCMC	1 cut(s)	285
BstUI	CGCG	6 cut(s)	72, 216, 248, 416, 839, 879
BstV1I	GCAGC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	225, 255
BstYI	RGATCY	2 cut(s)	225, 255
BstZI	CGGCCG	1 cut(s)	217
BsuRI	GGCC	9 cut(s)	30, 213, 219, 251, 507, 596, 677, 713, 718
BtgI	CCRYGG	2 cut(s)	214, 741
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	7 cut(s)	144, 167, 237, 324, 333, 505, 651
CfoI	GCGC	4 cut(s)	74, 248, 418, 655
Cfr10I	RCCGGY	5 cut(s)	142, 192, 331, 350, 565
Cfr42I	CCGCGG	1 cut(s)	217
Cfr9I	CCCGGG	1 cut(s)	270
CseI	GACGC	1 cut(s)	845
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	7 cut(s)	379, 580, 589, 634, 706, 742, 901
DdeI	CTNAG	1 cut(s)	96
DinI	GGCGCC	1 cut(s)	654
DpnI	GATC	2 cut(s)	227, 257
DpnII	GATC	2 cut(s)	225, 255
EaeI	YGGCCR	3 cut(s)	28, 217, 675
EagI	CGGCCG	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
EciI	GGCGGA	3 cut(s)	78, 540, 802
Ecl136II	GAGCTC	2 cut(s)	277, 892
EclXI	CGGCCG	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	3 cut(s)	129, 279, 894
Eco31I	GGTCTC	3 cut(s)	71, 293, 769
Eco47I	GGWCC	7 cut(s)	58, 190, 393, 481, 583, 624, 637
Eco52I	CGGCCG	1 cut(s)	217
Eco53kI	GAGCTC	2 cut(s)	277, 892
Eco57I	CTGAAG	1 cut(s)	131
Eco72I	CACGTG	1 cut(s)	243
Eco88I	CYCGRG	3 cut(s)	128, 270, 278
EcoICRI	GAGCTC	2 cut(s)	277, 892
EcoO109I	RGGNCCY	2 cut(s)	393, 624
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	3 cut(s)	129, 279, 894
EgeI	GGCGCC	1 cut(s)	654
EheI	GGCGCC	1 cut(s)	654
ErhI	CCWWGG	1 cut(s)	741
Esp3I	CGTCTC	2 cut(s)	99, 739
FaeI	CATG	7 cut(s)	382, 583, 592, 637, 709, 745, 904
FaiI	YATR	9 cut(s)	155, 380, 581, 590, 635, 707, 743, 821, 902
FaqI	GGGAC	6 cut(s)	350, 379, 569, 623, 637, 772
FatI	CATG	7 cut(s)	378, 579, 588, 633, 705, 741, 900
FauI	CCCGC	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	182
Fnu4HI	GCNGC	9 cut(s)	45, 48, 214, 217, 249, 314, 345, 684, 687
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	3 cut(s)	129, 279, 894
Fsp4HI	GCNGC	9 cut(s)	45, 48, 214, 217, 249, 314, 345, 684, 687
GlaI	GCGC	4 cut(s)	73, 247, 417, 654
GluI	GCNGC	9 cut(s)	45, 48, 214, 217, 249, 314, 345, 684, 687
GsaI	CCCAGC	1 cut(s)	809
GsuI	CTGGAG	1 cut(s)	338
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	9 cut(s)	30, 213, 219, 251, 507, 596, 677, 713, 718
HgaI	GACGC	1 cut(s)	845
HhaI	GCGC	4 cut(s)	74, 248, 418, 655
Hin1I	GRCGYC	1 cut(s)	653
Hin1II	CATG	7 cut(s)	382, 583, 592, 637, 709, 745, 904
Hin6I	GCGC	4 cut(s)	72, 246, 416, 653
HinP1I	GCGC	4 cut(s)	72, 246, 416, 653
HincII	GTYRAC	2 cut(s)	183, 388
HindII	GTYRAC	2 cut(s)	183, 388
HinfI	GANTC	2 cut(s)	83, 799
HphI	GGTGA	2 cut(s)	172, 563
Hpy166II	GTNNAC	5 cut(s)	58, 183, 388, 481, 571
Hpy188I	TCNGA	6 cut(s)	150, 230, 292, 519, 798, 857
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	5 cut(s)	58, 183, 388, 481, 571
Hpy99I	CGWCG	8 cut(s)	184, 187, 296, 445, 755, 839, 844, 916
HpyAV	CCTTC	5 cut(s)	106, 181, 196, 637, 739
HpyCH4III	ACNGT	2 cut(s)	177, 364
HpyCH4IV	ACGT	4 cut(s)	242, 457, 477, 750
HpyCH4V	TGCA	1 cut(s)	465
HpyF10VI	GCNNNNNNNGC	8 cut(s)	139, 245, 319, 328, 332, 341, 509, 683
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	4 cut(s)	242, 457, 477, 750
Hsp92I	GRCGYC	1 cut(s)	653
Hsp92II	CATG	7 cut(s)	382, 583, 592, 637, 709, 745, 904
HspAI	GCGC	4 cut(s)	72, 246, 416, 653
KasI	GGCGCC	1 cut(s)	652
KflI	GGGWCCC	1 cut(s)	393
KroI	GCCGGC	2 cut(s)	142, 331
KroNI	GCCGGC	2 cut(s)	144, 333
KspI	CCGCGG	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	225, 255
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	5 cut(s)	274, 319, 517, 889, 897
Lsp1109I	GCAGC	1 cut(s)	300
MaeII	ACGT	4 cut(s)	242, 457, 477, 750
MaeIII	GTNAC	2 cut(s)	598, 754
MalI	GATC	2 cut(s)	227, 257
MboI	GATC	2 cut(s)	225, 255
MboII	GAAGA	4 cut(s)	128, 250, 457, 622
MflI	RGATCY	2 cut(s)	225, 255
MhlI	GDGCHC	5 cut(s)	129, 279, 285, 324, 894
MluCI	AATT	2 cut(s)	17, 896
Mly113I	GGCGCC	1 cut(s)	653
MmeI	TCCRAC	2 cut(s)	315, 559
MroNI	GCCGGC	2 cut(s)	142, 331
MspA1I	CMGCKG	2 cut(s)	216, 265
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	6 cut(s)	72, 216, 248, 416, 839, 879
MwoI	GCNNNNNNNGC	8 cut(s)	139, 245, 319, 328, 332, 341, 509, 683
NaeI	GCCGGC	2 cut(s)	144, 333
NarI	GGCGCC	1 cut(s)	653
NcoI	CCATGG	1 cut(s)	741
NdeII	GATC	2 cut(s)	225, 255
NgoMIV	GCCGGC	2 cut(s)	142, 331
NlaIII	CATG	7 cut(s)	382, 583, 592, 637, 709, 745, 904
NmeAIII	GCCGAG	2 cut(s)	100, 352
NmuCI	GTSAC	2 cut(s)	598, 754
NspI	RCATGY	1 cut(s)	709
PciI	ACATGT	1 cut(s)	705
PciSI	GCTCTTC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	1 cut(s)	237
PdiI	GCCGGC	2 cut(s)	144, 333
PfeI	GAWTC	2 cut(s)	83, 799
PflMI	CCANNNNNTGG	2 cut(s)	309, 580
PkrI	GCNGC	9 cut(s)	46, 49, 215, 218, 250, 315, 346, 685, 688
PluTI	GGCGCC	1 cut(s)	656
PmaCI	CACGTG	1 cut(s)	243
PmlI	CACGTG	1 cut(s)	243
Ppu21I	YACGTR	2 cut(s)	243, 478
PpuMI	RGGWCCY	2 cut(s)	393, 624
PscI	ACATGT	1 cut(s)	705
Psp124BI	GAGCTC	2 cut(s)	279, 894
Psp5II	RGGWCCY	2 cut(s)	393, 624
Psp6I	CCWGG	1 cut(s)	507
PspCI	CACGTG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	805
PspGI	CCWGG	1 cut(s)	507
PspPPI	RGGWCCY	2 cut(s)	393, 624
PsuI	RGATCY	2 cut(s)	225, 255
PvuII	CAGCTG	1 cut(s)	265
SacI	GAGCTC	2 cut(s)	279, 894
SacII	CCGCGG	1 cut(s)	217
SalI	GTCGAC	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	9 cut(s)	45, 48, 214, 217, 249, 314, 345, 684, 687
Sau3AI	GATC	2 cut(s)	225, 255
SduI	GDGCHC	5 cut(s)	129, 279, 285, 324, 894
SfoI	GGCGCC	1 cut(s)	654
Sfr303I	CCGCGG	1 cut(s)	217
SgrBI	CCGCGG	1 cut(s)	217
SgrDI	CGTCGACG	1 cut(s)	181
SinI	GGWCC	7 cut(s)	58, 190, 393, 481, 583, 624, 637
SmaI	CCCGGG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	17, 896
SspDI	GGCGCC	1 cut(s)	652
SstI	GAGCTC	2 cut(s)	279, 894
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	2 cut(s)	177, 364
TaiI	ACGT	4 cut(s)	245, 460, 480, 753
TaqI	TCGA	3 cut(s)	182, 443, 914
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	17, 896
TauI	GCSGC	8 cut(s)	47, 50, 216, 219, 251, 347, 686, 689
TfiI	GAWTC	2 cut(s)	83, 799
TseFI	GTSAC	2 cut(s)	598, 754
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	2 cut(s)	598, 754
TspDTI	ATGAA	2 cut(s)	622, 889
TspGWI	ACGGA	2 cut(s)	373, 902
TspMI	CCCGGG	1 cut(s)	270
Van91I	CCANNNNNTGG	2 cut(s)	309, 580
VpaK11BI	GGWCC	7 cut(s)	58, 190, 393, 481, 583, 624, 637
XapI	RAATTY	1 cut(s)	17
XceI	RCATGY	1 cut(s)	709
XmaI	CCCGGG	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.