Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0015863

Physical Location & Seq

Genomic Coordinates Reverse (-)

44174013 .. 44175266

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G020550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCTTCAAAACCAAGAATTTGAACCCGGCCAACACACCGCAGCCGCCGCAGGAGTGGACCCCACCGACCGCGCCGAGACCGATTCTCCGCCGTCTCAGGCTCTTGTCCTGAAGGAAGAGCACGAACCCGAGCAGAGGTCGCCGGCTCTGACTATGGCGGTGAGCAAGCCGAAACGGTCGTCGACGAAGGACCGGCACACGAAGGTTGAGGGCCGCGGCCGGAGGATCCGAATGCCCGCCACGTGCGCGGCCCGGATCTTCCAGCTGACCCGGGAGCTCGGGCACAAGTCCGACGGCGAGACCATCCGGTGGCTGCTGGAGCACGCCGAGCCGGCGATAATAGCCGCCACCGGCACAGGAACCGTCCCGGCAATCGCCATGTCCGTCAACGGGTCCCTCAAAATCCCAACCACCGCGCCCGACCCGAAACCCGGCGACCCGTCGAAGAAGCGCAAACGTCCTTGCAATAGCGACTACGTGGACCTAAACGACAGCGTTTCGGCTGGCCTGGCTCCTCTGACCGCCACCACCCTCCAACAACCGACACCACCGCCACCGCCACCGCCACAGCCGGTTCACCAAAGCATGGTCCCCATGTGGGCCGTGACCTCAAACGGCGTCGTTCCGGGGACCTTCTTCATGGTCCCTCAAACGCAGGCGCCCCACCTATTTACATTCCCGGCCACCGCGGCCGCCTCGCCTTTCCTCAACATGTCGGCCCGGCCCATCTCCTCCTTCGTCTCCTCCATGGGCAACGTCGCCGCTCCGGTCTCCAGTACGCTGTCGTTTCTGTCCCCCGTTCCGATTCCGCCAGCCTCCGCCACCATAACGAACAGCACCGACGCGACGACCACCACTCTCCGAGACTTCACGCTGGAAATCCGCGACAAAACGGAGCTCCAATTCATGTCCGGGTCGTCGAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008361 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048519 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0090066 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

309

Amino Acids

32.97

Weight (kDa)

8.57

Isoelectric Point (pI)

62.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TCP	PF03634	61 - 132	5.9e-26	TCP family transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45680
fragaria_vesca	FvH4_7g12810
malus_domestica	MD02G1196100.v1.1
prunus_persica	Prupe.2G152600_v2.0.a1
pyrus_communis	pycom02g15980
rosa_chinensis	RchiOBHm_Chr1g0351841
rosa_laevigata	RLG00000028378
rosa_multiflora	Rmu_co8473567.1_g000001 Rmu_sc0001933.1_g000007
rosa_rugosa	Rorug01G0222200
rosa_samantha	Rh1AG236100 Rh1BG206600 Rh1CG220600 Rh1DG233600
rosa_wichuraiana	Rw1G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	658
AccB7I	CCANNNNNTGG	2 cut(s)	309, 586
AccBSI	CCGCTC	1 cut(s)	764
AccI	GTMKAC	1 cut(s)	182
AccII	CGCG	7 cut(s)	72, 216, 248, 416, 689, 845, 885
AclWI	GGATC	3 cut(s)	220, 233, 263
AcoI	YGGCCR	4 cut(s)	28, 217, 681, 690
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	131
AcvI	CACGTG	1 cut(s)	243
AcyI	GRCGYC	2 cut(s)	618, 659
AfaI	GTAC	1 cut(s)	778
AfiI	CCNNNNNNNGG	6 cut(s)	135, 309, 390, 431, 586, 598
AflIII	ACRYGT	1 cut(s)	711
AgsI	TTSAA	2 cut(s)	8, 23
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	3 cut(s)	265, 277, 898
AluI	AGCT	3 cut(s)	265, 277, 898
Alw21I	GWGCWC	4 cut(s)	123, 279, 324, 900
Alw26I	GTCTC	6 cut(s)	71, 99, 293, 745, 775, 858
AlwI	GGATC	3 cut(s)	220, 233, 263
Ama87I	CYCGRG	3 cut(s)	128, 270, 278
ApeKI	GCWGC	2 cut(s)	41, 313
ApoI	RAATTY	1 cut(s)	17
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspLEI	GCGC	5 cut(s)	74, 248, 418, 453, 661
AsuHPI	GGTGA	2 cut(s)	172, 569
AvaI	CYCGRG	3 cut(s)	128, 270, 278
AvaII	GGWCC	7 cut(s)	58, 190, 393, 481, 589, 630, 643
BaeGI	GKGCMC	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	225
BanI	GGYRCC	1 cut(s)	658
BanII	GRGCYC	2 cut(s)	279, 900
BbrPI	CACGTG	1 cut(s)	243
Bbv12I	GWGCWC	4 cut(s)	123, 279, 324, 900
BbvI	GCAGC	2 cut(s)	53, 300
BccI	CCATC	2 cut(s)	311, 734
BceAI	ACGGC	4 cut(s)	76, 310, 587, 631
BciT130I	CCWGG	1 cut(s)	509
BcoDI	GTCTC	6 cut(s)	71, 99, 293, 745, 775, 858
BfoI	RGCGCY	1 cut(s)	662
BglI	GCCNNNNNGGC	2 cut(s)	332, 689
Bme18I	GGWCC	7 cut(s)	58, 190, 393, 481, 589, 630, 643
BmeT110I	CYCGRG	3 cut(s)	128, 270, 278
BpmI	CTGGAG	2 cut(s)	338, 757
BsaAI	YACGTR	2 cut(s)	243, 478
BsaHI	GRCGYC	2 cut(s)	618, 659
BsaI	GGTCTC	3 cut(s)	71, 293, 775
BsaJI	CCNNGG	5 cut(s)	214, 270, 626, 687, 747
BsaWI	WCCGGW	2 cut(s)	306, 766
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bsc4I	CCNNNNNNNGG	6 cut(s)	135, 309, 390, 431, 586, 598
Bse118I	RCCGGY	5 cut(s)	142, 192, 331, 350, 571
Bse1I	ACTGG	1 cut(s)	774
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	5 cut(s)	214, 270, 626, 687, 747
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	6 cut(s)	135, 309, 390, 431, 586, 598
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	774
BseRI	GAGGAG	3 cut(s)	504, 721, 733
BseSI	GKGCMC	1 cut(s)	285
BseX3I	CGGCCG	2 cut(s)	217, 690
BseXI	GCAGC	2 cut(s)	53, 300
Bsh1236I	CGCG	7 cut(s)	72, 216, 248, 416, 689, 845, 885
Bsh1285I	CGRYCG	4 cut(s)	70, 179, 220, 693
BshNI	GGYRCC	1 cut(s)	658
BsiEI	CGRYCG	4 cut(s)	70, 179, 220, 693
BsiHKAI	GWGCWC	4 cut(s)	123, 279, 324, 900
BsiHKCI	CYCGRG	3 cut(s)	128, 270, 278
BslFI	GGGAC	6 cut(s)	350, 379, 575, 629, 643, 778
BslI	CCNNNNNNNGG	6 cut(s)	135, 309, 390, 431, 586, 598
BsmAI	GTCTC	6 cut(s)	71, 99, 293, 745, 775, 858
BsmBI	CGTCTC	2 cut(s)	99, 745
BsmFI	GGGAC	6 cut(s)	350, 379, 575, 629, 643, 778
BsmI	GAATGC	1 cut(s)	237
Bso31I	GGTCTC	3 cut(s)	71, 293, 775
BsoBI	CYCGRG	3 cut(s)	128, 270, 278
Bsp1286I	GDGCHC	5 cut(s)	123, 279, 285, 324, 900
Bsp143I	GATC	2 cut(s)	225, 255
Bsp19I	CCATGG	1 cut(s)	747
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	7 cut(s)	72, 216, 248, 416, 689, 845, 885
BspPI	GGATC	3 cut(s)	220, 233, 263
BspQI	GCTCTTC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	658
BspTNI	GGTCTC	3 cut(s)	71, 293, 775
BsrBI	CCGCTC	1 cut(s)	764
BsrFI	RCCGGY	5 cut(s)	142, 192, 331, 350, 571
BsrI	ACTGG	1 cut(s)	774
BssAI	RCCGGY	5 cut(s)	142, 192, 331, 350, 571
BssECI	CCNNGG	5 cut(s)	214, 270, 626, 687, 747
BssMI	GATC	2 cut(s)	225, 255
BssNI	GRCGYC	2 cut(s)	618, 659
BssT1I	CCWWGG	1 cut(s)	747
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	177, 364
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	2 cut(s)	618, 659
BstBAI	YACGTR	2 cut(s)	243, 478
BstC8I	GCNNGC	8 cut(s)	144, 167, 237, 324, 333, 505, 657, 813
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	3 cut(s)	214, 687, 747
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	7 cut(s)	72, 216, 248, 416, 689, 845, 885
BstH2I	RGCGCY	1 cut(s)	662
BstHHI	GCGC	5 cut(s)	74, 248, 418, 453, 661
BstKTI	GATC	2 cut(s)	228, 258
BstMAI	GTCTC	6 cut(s)	71, 99, 293, 745, 775, 858
BstMBI	GATC	2 cut(s)	225, 255
BstMCI	CGRYCG	4 cut(s)	70, 179, 220, 693
BstMWI	GCNNNNNNNGC	9 cut(s)	47, 139, 245, 319, 328, 332, 341, 509, 689
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	715
BstSLI	GKGCMC	1 cut(s)	285
BstUI	CGCG	7 cut(s)	72, 216, 248, 416, 689, 845, 885
BstV1I	GCAGC	2 cut(s)	53, 300
BstX2I	RGATCY	2 cut(s)	225, 255
BstYI	RGATCY	2 cut(s)	225, 255
BstZI	CGGCCG	2 cut(s)	217, 690
BtgI	CCRYGG	3 cut(s)	214, 687, 747
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	8 cut(s)	144, 167, 237, 324, 333, 505, 657, 813
CciNI	GCGGCCGC	1 cut(s)	690
CfoI	GCGC	5 cut(s)	74, 248, 418, 453, 661
Cfr10I	RCCGGY	5 cut(s)	142, 192, 331, 350, 571
Cfr42I	CCGCGG	2 cut(s)	217, 690
Cfr9I	CCCGGG	1 cut(s)	270
CseI	GACGC	2 cut(s)	607, 851
Csp6I	GTAC	1 cut(s)	777
CviAII	CATG	7 cut(s)	379, 586, 595, 640, 712, 748, 907
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	1 cut(s)	96
DinI	GGCGCC	1 cut(s)	660
DpnI	GATC	2 cut(s)	227, 257
DpnII	GATC	2 cut(s)	225, 255
EaeI	YGGCCR	4 cut(s)	28, 217, 681, 690
EagI	CGGCCG	2 cut(s)	217, 690
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
EciI	GGCGGA	3 cut(s)	78, 798, 808
Ecl136II	GAGCTC	2 cut(s)	277, 898
EclXI	CGGCCG	2 cut(s)	217, 690
Eco130I	CCWWGG	1 cut(s)	747
Eco24I	GRGCYC	2 cut(s)	279, 900
Eco31I	GGTCTC	3 cut(s)	71, 293, 775
Eco47I	GGWCC	7 cut(s)	58, 190, 393, 481, 589, 630, 643
Eco52I	CGGCCG	2 cut(s)	217, 690
Eco53kI	GAGCTC	2 cut(s)	277, 898
Eco57I	CTGAAG	1 cut(s)	131
Eco72I	CACGTG	1 cut(s)	243
Eco88I	CYCGRG	3 cut(s)	128, 270, 278
EcoICRI	GAGCTC	2 cut(s)	277, 898
EcoO109I	RGGNCCY	2 cut(s)	393, 630
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	747
EcoT38I	GRGCYC	2 cut(s)	279, 900
EgeI	GGCGCC	1 cut(s)	660
EheI	GGCGCC	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	747
Esp3I	CGTCTC	2 cut(s)	99, 745
FaeI	CATG	7 cut(s)	382, 589, 598, 643, 715, 751, 910
FaiI	YATR	9 cut(s)	155, 380, 587, 596, 641, 713, 749, 827, 908
FaqI	GGGAC	6 cut(s)	350, 379, 575, 629, 643, 778
FatI	CATG	7 cut(s)	378, 585, 594, 639, 711, 747, 906
FauI	CCCGC	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	182
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	2 cut(s)	279, 900
GlaI	GCGC	5 cut(s)	73, 247, 417, 452, 660
GsuI	CTGGAG	2 cut(s)	338, 757
HaeII	RGCGCY	1 cut(s)	662
HgaI	GACGC	2 cut(s)	607, 851
HhaI	GCGC	5 cut(s)	74, 248, 418, 453, 661
Hin1I	GRCGYC	2 cut(s)	618, 659
Hin1II	CATG	7 cut(s)	382, 589, 598, 643, 715, 751, 910
Hin6I	GCGC	5 cut(s)	72, 246, 416, 451, 659
HinP1I	GCGC	5 cut(s)	72, 246, 416, 451, 659
HincII	GTYRAC	2 cut(s)	183, 388
HindII	GTYRAC	2 cut(s)	183, 388
HinfI	GANTC	2 cut(s)	83, 805
HphI	GGTGA	2 cut(s)	172, 569
Hpy166II	GTNNAC	5 cut(s)	58, 183, 388, 481, 577
Hpy188I	TCNGA	6 cut(s)	150, 230, 292, 519, 804, 863
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	5 cut(s)	58, 183, 388, 481, 577
Hpy99I	CGWCG	9 cut(s)	184, 187, 296, 445, 623, 761, 845, 850, 922
HpyAV	CCTTC	5 cut(s)	106, 181, 196, 643, 745
HpyCH4III	ACNGT	2 cut(s)	177, 364
HpyCH4IV	ACGT	4 cut(s)	242, 457, 477, 756
HpyCH4V	TGCA	1 cut(s)	465
HpyF10VI	GCNNNNNNNGC	9 cut(s)	47, 139, 245, 319, 328, 332, 341, 509, 689
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	4 cut(s)	242, 457, 477, 756
Hsp92I	GRCGYC	2 cut(s)	618, 659
Hsp92II	CATG	7 cut(s)	382, 589, 598, 643, 715, 751, 910
HspAI	GCGC	5 cut(s)	72, 246, 416, 451, 659
KasI	GGCGCC	1 cut(s)	658
KflI	GGGWCCC	1 cut(s)	393
KroI	GCCGGC	2 cut(s)	142, 331
KroNI	GCCGGC	2 cut(s)	144, 333
KspI	CCGCGG	2 cut(s)	217, 690
Kzo9I	GATC	2 cut(s)	225, 255
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	6 cut(s)	274, 319, 517, 769, 895, 903
Lsp1109I	GCAGC	2 cut(s)	53, 300
MaeII	ACGT	4 cut(s)	242, 457, 477, 756
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	2 cut(s)	227, 257
MbiI	CCGCTC	1 cut(s)	764
MboI	GATC	2 cut(s)	225, 255
MboII	GAAGA	4 cut(s)	128, 250, 457, 628
MflI	RGATCY	2 cut(s)	225, 255
MhlI	GDGCHC	5 cut(s)	123, 279, 285, 324, 900
MluCI	AATT	2 cut(s)	17, 902
Mly113I	GGCGCC	1 cut(s)	659
MmeI	TCCRAC	2 cut(s)	315, 559
MroNI	GCCGGC	2 cut(s)	142, 331
MspA1I	CMGCKG	3 cut(s)	216, 265, 689
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	7 cut(s)	72, 216, 248, 416, 689, 845, 885
MwoI	GCNNNNNNNGC	9 cut(s)	47, 139, 245, 319, 328, 332, 341, 509, 689
NaeI	GCCGGC	2 cut(s)	144, 333
NarI	GGCGCC	1 cut(s)	659
NcoI	CCATGG	1 cut(s)	747
NdeII	GATC	2 cut(s)	225, 255
NgoMIV	GCCGGC	2 cut(s)	142, 331
NlaIII	CATG	7 cut(s)	382, 589, 598, 643, 715, 751, 910
NmeAIII	GCCGAG	2 cut(s)	100, 352
NmuCI	GTSAC	1 cut(s)	604
NotI	GCGGCCGC	1 cut(s)	690
NspI	RCATGY	1 cut(s)	715
PciI	ACATGT	1 cut(s)	711
PciSI	GCTCTTC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	1 cut(s)	237
PdiI	GCCGGC	2 cut(s)	144, 333
PfeI	GAWTC	2 cut(s)	83, 805
PflMI	CCANNNNNTGG	2 cut(s)	309, 586
PluTI	GGCGCC	1 cut(s)	662
PmaCI	CACGTG	1 cut(s)	243
PmlI	CACGTG	1 cut(s)	243
Ppu21I	YACGTR	2 cut(s)	243, 478
PpuMI	RGGWCCY	2 cut(s)	393, 630
PscI	ACATGT	1 cut(s)	711
Psp124BI	GAGCTC	2 cut(s)	279, 900
Psp5II	RGGWCCY	2 cut(s)	393, 630
Psp6I	CCWGG	1 cut(s)	507
PspCI	CACGTG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	507
PspPPI	RGGWCCY	2 cut(s)	393, 630
PsuI	RGATCY	2 cut(s)	225, 255
PvuII	CAGCTG	1 cut(s)	265
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
SacI	GAGCTC	2 cut(s)	279, 900
SacII	CCGCGG	2 cut(s)	217, 690
SalI	GTCGAC	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	225, 255
SduI	GDGCHC	5 cut(s)	123, 279, 285, 324, 900
SfiI	GGCCNNNNNGGCC	1 cut(s)	689
SfoI	GGCGCC	1 cut(s)	660
Sfr303I	CCGCGG	2 cut(s)	217, 690
SgrBI	CCGCGG	2 cut(s)	217, 690
SgrDI	CGTCGACG	1 cut(s)	181
SinI	GGWCC	7 cut(s)	58, 190, 393, 481, 589, 630, 643
SmaI	CCCGGG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	17, 902
SspDI	GGCGCC	1 cut(s)	658
SstI	GAGCTC	2 cut(s)	279, 900
StyI	CCWWGG	1 cut(s)	747
TaaI	ACNGT	2 cut(s)	177, 364
TaiI	ACGT	4 cut(s)	245, 460, 480, 759
TaqI	TCGA	3 cut(s)	182, 443, 920
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	17, 902
TauI	GCSGC	9 cut(s)	47, 50, 216, 219, 251, 347, 692, 695, 764
TfiI	GAWTC	2 cut(s)	83, 805
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	2 cut(s)	41, 313
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	2 cut(s)	628, 895
TspGWI	ACGGA	2 cut(s)	373, 908
TspMI	CCCGGG	1 cut(s)	270
Van91I	CCANNNNNTGG	2 cut(s)	309, 586
VpaK11BI	GGWCC	7 cut(s)	58, 190, 393, 481, 589, 630, 643
XapI	RAATTY	1 cut(s)	17
XceI	RCATGY	1 cut(s)	715
XmaI	CCCGGG	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.