Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0015863

Physical Location & Seq

Genomic Coordinates Reverse (-)

32494066 .. 32494410

Gene Structure 345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG206600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTCCCCATGTGGGCCGTGACCTCAAACGGCGTGGTTCCGGGGACCTTCTTCATGGTCCCTCAAACGCAGGCGCCCCACCTATTTACATTCCCGGCCACCGCCGCCGCCTCGCCTTTCCTCAACATGTCGGCCCGGCCCATCTCCTCCTTCGTCTCCTCCATGGGCAACGTCGTCACTCCGGTCTCCAATACGCTGTCGTTTCTGTCCCCCGTTCCGATTCCCCCAGCCTCCGCCACCATAACGAACAGCACCGACGCGACGACCACCACCCTCCGAGACTTCTCGCTGGAAATCCGCGACAAAACGGAGCTCCAATTCATGTCCGGGTCGTCGAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008361 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032535 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048519 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0090066 GO:0099402 GO:0140110 GO:1900055 GO:1900056 GO:1903506 GO:1905622 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TCP

Protein Analysis

114

Amino Acids

12.12

Weight (kDa)

6.7

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45680
fragaria_vesca	FvH4_7g12810
malus_domestica	MD02G1196100.v1.1
prunus_persica	Prupe.2G152600_v2.0.a1
pyrus_communis	pycom02g15980
rosa_chinensis	RchiOBHm_Chr1g0351841
rosa_laevigata	RLG00000028378
rosa_multiflora	Rmu_co8473567.1_g000001 Rmu_sc0001933.1_g000007
rosa_rugosa	Rorug01G0222200
rosa_samantha	Rh1AG236100 Rh1BG206600 Rh1CG220600 Rh1DG233600
rosa_wichuraiana	Rw1G020550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AccII	CGCG	2 cut(s)	260, 300
AciI	CCGC	5 cut(s)	102, 105, 108, 234, 298
AcoI	YGGCCR	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	126
AluBI	AGCT	1 cut(s)	313
AluI	AGCT	1 cut(s)	313
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	3 cut(s)	160, 190, 273
AoxI	GGCC	4 cut(s)	15, 96, 132, 137
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	6 cut(s)	4, 15, 45, 58, 133, 138
AsuC2I	CCSGG	4 cut(s)	42, 95, 136, 328
AvaII	GGWCC	3 cut(s)	4, 45, 58
BanI	GGYRCC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	315
BccI	CCATC	1 cut(s)	149
BceAI	ACGGC	2 cut(s)	2, 46
BcnI	CCSGG	4 cut(s)	42, 95, 136, 328
BcoDI	GTCTC	3 cut(s)	160, 190, 273
BfoI	RGCGCY	1 cut(s)	77
BisI	GCNGC	2 cut(s)	105, 108
BlsI	GCNGC	2 cut(s)	106, 109
Bme1390I	CCNGG	4 cut(s)	42, 95, 136, 328
Bme18I	GGWCC	3 cut(s)	4, 45, 58
BmgT120I	GGNCC	6 cut(s)	4, 15, 45, 58, 133, 138
BmiI	GGNNCC	5 cut(s)	6, 39, 46, 60, 75
BmrFI	CCNGG	4 cut(s)	42, 95, 136, 328
BpuMI	CCSGG	4 cut(s)	42, 95, 136, 328
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	41, 162
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	41, 162
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseRI	GAGGAG	2 cut(s)	136, 148
BseYI	CCCAGC	1 cut(s)	226
Bsh1236I	CGCG	2 cut(s)	260, 300
BshFI	GGCC	4 cut(s)	17, 98, 134, 139
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	5 cut(s)	41, 95, 136, 182, 327
BslFI	GGGAC	3 cut(s)	44, 58, 193
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	3 cut(s)	160, 190, 273
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	3 cut(s)	44, 58, 193
BsnI	GGCC	4 cut(s)	17, 98, 134, 139
Bso31I	GGTCTC	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	5 cut(s)	102, 105, 108, 234, 298
BspANI	GGCC	4 cut(s)	17, 98, 134, 139
BspFNI	CGCG	2 cut(s)	260, 300
BspLI	GGNNCC	5 cut(s)	6, 39, 46, 60, 75
BspT107I	GGYRCC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	41, 162
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	1 cut(s)	162
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	72
BstDSI	CCRYGG	1 cut(s)	162
BstFNI	CGCG	2 cut(s)	260, 300
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	76
BstMAI	GTCTC	3 cut(s)	160, 190, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	130
BstSCI	CCNGG	4 cut(s)	40, 93, 134, 326
BstUI	CGCG	2 cut(s)	260, 300
BsuRI	GGCC	4 cut(s)	17, 98, 134, 139
BtgI	CCRYGG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	6 cut(s)	4, 15, 45, 58, 133, 138
CseI	GACGC	1 cut(s)	266
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CviAII	CATG	5 cut(s)	10, 55, 127, 163, 322
CviJI	RGCY	6 cut(s)	17, 98, 134, 139, 230, 313
CviKI_1	RGCY	6 cut(s)	17, 98, 134, 139, 230, 313
DinI	GGCGCC	1 cut(s)	75
EaeI	YGGCCR	1 cut(s)	96
EciI	GGCGGA	1 cut(s)	223
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	3 cut(s)	4, 45, 58
Eco53kI	GAGCTC	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	315
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	5 cut(s)	13, 58, 130, 166, 325
FaiI	YATR	6 cut(s)	11, 56, 128, 164, 242, 323
FaqI	GGGAC	3 cut(s)	44, 58, 193
FatI	CATG	5 cut(s)	9, 54, 126, 162, 321
Fnu4HI	GCNGC	2 cut(s)	105, 108
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	105, 108
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	2 cut(s)	105, 108
GsaI	CCCAGC	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	4 cut(s)	17, 98, 134, 139
HapII	CCGG	5 cut(s)	41, 95, 136, 182, 327
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	5 cut(s)	13, 58, 130, 166, 325
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	5 cut(s)	41, 95, 136, 182, 327
Hpy188I	TCNGA	2 cut(s)	219, 278
Hpy99I	CGWCG	4 cut(s)	176, 260, 265, 337
HpyAV	CCTTC	2 cut(s)	58, 160
HpyCH4IV	ACGT	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	5 cut(s)	13, 58, 130, 166, 325
HspAI	GCGC	1 cut(s)	74
KasI	GGCGCC	1 cut(s)	73
LmnI	GCTCC	2 cut(s)	310, 318
LpnPI	CCDG	8 cut(s)	54, 56, 108, 149, 195, 240, 275, 340
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	19, 175
MboII	GAAGA	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	1 cut(s)	317
Mly113I	GGCGCC	1 cut(s)	74
MnlI	CCTC	8 cut(s)	34, 72, 121, 131, 157, 169, 241, 284
MspI	CCGG	5 cut(s)	41, 95, 136, 182, 327
MspR9I	CCNGG	4 cut(s)	42, 95, 136, 328
MvnI	CGCG	2 cut(s)	260, 300
MwoI	GCNNNNNNNGC	1 cut(s)	104
NarI	GGCGCC	1 cut(s)	74
NciI	CCSGG	4 cut(s)	42, 95, 136, 328
NcoI	CCATGG	1 cut(s)	162
NlaIII	CATG	5 cut(s)	13, 58, 130, 166, 325
NlaIV	GGNNCC	5 cut(s)	6, 39, 46, 60, 75
NmuCI	GTSAC	2 cut(s)	19, 175
NspI	RCATGY	1 cut(s)	130
PciI	ACATGT	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	2 cut(s)	106, 109
PluTI	GGCGCC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	45
PscI	ACATGT	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	226
PspN4I	GGNNCC	5 cut(s)	6, 39, 46, 60, 75
PspPI	GGNCC	6 cut(s)	4, 15, 45, 58, 133, 138
PspPPI	RGGWCCY	1 cut(s)	45
SacI	GAGCTC	1 cut(s)	315
SatI	GCNGC	2 cut(s)	105, 108
Sau96I	GGNCC	6 cut(s)	4, 15, 45, 58, 133, 138
ScrFI	CCNGG	4 cut(s)	42, 95, 136, 328
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	5 cut(s)	26, 50, 84, 174, 315
SfoI	GGCGCC	1 cut(s)	75
SinI	GGWCC	3 cut(s)	4, 45, 58
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	5 cut(s)	102, 105, 108, 234, 298
SspDI	GGCGCC	1 cut(s)	73
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	4 cut(s)	40, 93, 134, 326
StyI	CCWWGG	1 cut(s)	162
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	317
TauI	GCSGC	2 cut(s)	107, 110
TfiI	GAWTC	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	19, 175
Tsp45I	GTSAC	2 cut(s)	19, 175
TspDTI	ATGAA	2 cut(s)	43, 310
TspGWI	ACGGA	1 cut(s)	323
VpaK11BI	GGWCC	3 cut(s)	4, 45, 58
XceI	RCATGY	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.