FvH4_7g12810
TCP Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
11595516 .. 11596385
870 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12810.t1

Sequence Viewer

Length: 870 bp
ATGCTTCAAAATCAAGAGGTTAAACCGGGACAAGTGGACCCCACCGGCCGCGGCGGGACCGATTCTCCACCGTCACAGCCTCCTCTTGTCATGAAGGAAGAGCAAGAGCCGGAGCAGAGATCTTCGCAGGCGATTACGGTGGCGGTGAACAAGCCGAAACGGACGTCGACGAAAGACCGGCACACGAAAGTGGAGGGGCGAGGCCGGAGGATCCGAATGCCCGCCACGTGCGCGGCCCGGATCTTCCAGCTGACCCGGGAGCTGGGGCATAAGTCCGACGGCGAGACCATCCGGTGGCTACTGGAGCACGCCGAGCCGGCGATAATAGCCGCCACCGGCACCGGGACCATCCCGGCGATAGCCATGTCCGTCAACGGGTCGCTCAAAATCCCAACCACTGCGCCCGACTCCGGCGACCCGGCCAAGAAACGCAAGCGGCCCTGCAATAGCGACTACGTGGACCTAAACGACACCGTTTCGGCTGGGCTGGCTCCTCTGACCACCACCACCCAACAACAACCGACACCACCACCGCCGCAGCCGGTTGCCCAAAGCATGGTCCCCATGTGGGCTGTGACATCAAACGGCGTCGTTCCGGGGACGTTCTTCATGGTCCCTCAAACTCAGTCCCCACACATGTTCACATTCCCAGCCACCGCTAACGCCCCCTCGCCTTTCCTCAACATGTCGGCCCGGCCCATCTCCTCCTTCGTCTCCTCCATGGGCACCAACACTCTCTCGTTTATCTCCCCAGCTTCAACTCCTCCTCCGGCCTCCGCCGACATCACCCACAGCACCGTCGCGACCACCACCACCTCCCTCCGCGACAAGACGGAGCTCCAGTTCATGTCCGGTTCGTCAAAGCATTGA

Protein Analysis

290

Amino Acids

30.86

Weight (kDa)

9.51

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 55 - 128 1.9e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45680
fragaria_vesca FvH4_7g12810
malus_domestica MD02G1196100.v1.1
prunus_persica Prupe.2G152600_v2.0.a1
pyrus_communis pycom02g15980
rosa_chinensis RchiOBHm_Chr1g0351841
rosa_laevigata RLG00000028378
rosa_multiflora Rmu_co8473567.1_g000001 Rmu_sc0001933.1_g000007
rosa_rugosa Rorug01G0222200
rosa_samantha Rh1AG236100 Rh1BG206600 Rh1CG220600 Rh1DG233600
rosa_wichuraiana Rw1G020550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 167
AccB1I GGYRCC 2 cut(s) 338, 725
AccB7I CCANNNNNTGG 2 cut(s) 294, 556
AccI GTMKAC 1 cut(s) 167
AccII CGCG 4 cut(s) 51, 233, 803, 825
AclWI GGATC 3 cut(s) 205, 218, 248
AcoI YGGCCR 2 cut(s) 46, 420
AcvI CACGTG 1 cut(s) 228
AcyI GRCGYC 2 cut(s) 164, 588
AfiI CCNNNNNNNGG 7 cut(s) 262, 294, 342, 375, 410, 556, 568
AflIII ACRYGT 2 cut(s) 636, 684
AgsI TTSAA 2 cut(s) 8, 759
AleI CACNNNNGTG 1 cut(s) 188
AloI GAACNNNNNNTCC 2 cut(s) 827, 859
AluBI AGCT 4 cut(s) 250, 262, 755, 838
AluI AGCT 4 cut(s) 250, 262, 755, 838
Alw21I GWGCWC 2 cut(s) 309, 840
Alw26I GTCTC 2 cut(s) 278, 718
AlwI GGATC 3 cut(s) 205, 218, 248
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 8 cut(s) 46, 202, 234, 420, 437, 690, 695, 771
ApeKI GCWGC 1 cut(s) 538
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspLEI GCGC 2 cut(s) 233, 403
AsuC2I CCSGG 9 cut(s) 27, 238, 256, 257, 343, 353, 419, 597, 694
AsuHPI GGTGA 2 cut(s) 157, 778
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 6 cut(s) 37, 57, 345, 460, 559, 613
BaeGI GKGCMC 1 cut(s) 728
BamHI GGATCC 1 cut(s) 210
BanI GGYRCC 2 cut(s) 338, 725
BanII GRGCYC 1 cut(s) 840
BbrPI CACGTG 1 cut(s) 228
Bbv12I GWGCWC 2 cut(s) 309, 840
BbvI GCAGC 1 cut(s) 550
BccI CCATC 3 cut(s) 296, 356, 707
BceAI ACGGC 2 cut(s) 295, 601
BcnI CCSGG 9 cut(s) 27, 238, 256, 257, 343, 353, 419, 597, 694
BcoDI GTCTC 2 cut(s) 278, 718
BglI GCCNNNNNGGC 1 cut(s) 317
BglII AGATCT 1 cut(s) 119
BisI GCNGC 7 cut(s) 49, 52, 234, 330, 437, 536, 539
BlsI GCNGC 7 cut(s) 50, 53, 235, 331, 438, 537, 540
Bme1390I CCNGG 9 cut(s) 27, 238, 256, 257, 343, 353, 419, 597, 694
Bme18I GGWCC 6 cut(s) 37, 57, 345, 460, 559, 613
BmeT110I CYCGRG 1 cut(s) 255
BmiI GGNNCC 9 cut(s) 39, 58, 212, 340, 346, 492, 561, 615, 727
BmrFI CCNGG 9 cut(s) 27, 238, 256, 257, 343, 353, 419, 597, 694
BpmI CTGGAG 2 cut(s) 323, 824
BpuMI CCSGG 9 cut(s) 27, 238, 256, 257, 343, 353, 419, 597, 694
BsaAI YACGTR 2 cut(s) 228, 457
BsaHI GRCGYC 2 cut(s) 164, 588
BsaI GGTCTC 1 cut(s) 278
BsaJI CCNNGG 4 cut(s) 49, 255, 596, 720
BsaWI WCCGGW 2 cut(s) 291, 851
BsaXI ACNNNNNCTCC 6 cut(s) 49, 79, 751, 781, 827, 857
Bsc4I CCNNNNNNNGG 7 cut(s) 262, 294, 342, 375, 410, 556, 568
Bse118I RCCGGY 5 cut(s) 44, 177, 316, 335, 541
Bse1I ACTGG 2 cut(s) 306, 841
BseDI CCNNGG 4 cut(s) 49, 255, 596, 720
BseGI GGATG 2 cut(s) 288, 348
BseLI CCNNNNNNNGG 7 cut(s) 262, 294, 342, 375, 410, 556, 568
BseMII CTCAG 1 cut(s) 638
BseNI ACTGG 2 cut(s) 306, 841
BseRI GAGGAG 6 cut(s) 72, 483, 694, 706, 753, 756
BseSI GKGCMC 1 cut(s) 728
BseX3I CGGCCG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 550
BseYI CCCAGC 4 cut(s) 262, 482, 649, 751
Bsh1236I CGCG 4 cut(s) 51, 233, 803, 825
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 8 cut(s) 48, 204, 236, 422, 439, 692, 697, 773
BshNI GGYRCC 2 cut(s) 338, 725
BsiEI CGRYCG 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 309, 840
BsiHKCI CYCGRG 1 cut(s) 255
BslFI GGGAC 7 cut(s) 42, 70, 358, 545, 599, 613, 613
BslI CCNNNNNNNGG 7 cut(s) 262, 294, 342, 375, 410, 556, 568
BsmAI GTCTC 2 cut(s) 278, 718
BsmBI CGTCTC 1 cut(s) 718
BsmFI GGGAC 7 cut(s) 42, 70, 358, 545, 599, 613, 613
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 8 cut(s) 48, 204, 236, 422, 439, 692, 697, 773
Bso31I GGTCTC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 309, 728, 840
Bsp143I GATC 3 cut(s) 119, 210, 240
Bsp19I CCATGG 1 cut(s) 720
Bsp68I TCGCGA 1 cut(s) 803
BspANI GGCC 8 cut(s) 48, 204, 236, 422, 439, 692, 697, 773
BspCNI CTCAG 1 cut(s) 637
BspFNI CGCG 4 cut(s) 51, 233, 803, 825
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 9 cut(s) 39, 58, 212, 340, 346, 492, 561, 615, 727
BspPI GGATC 3 cut(s) 205, 218, 248
BspQI GCTCTTC 1 cut(s) 93
BspT107I GGYRCC 2 cut(s) 338, 725
BspTNI GGTCTC 1 cut(s) 278
BsrFI RCCGGY 5 cut(s) 44, 177, 316, 335, 541
BsrI ACTGG 2 cut(s) 306, 841
BssAI RCCGGY 5 cut(s) 44, 177, 316, 335, 541
BssECI CCNNGG 4 cut(s) 49, 255, 596, 720
BssMI GATC 3 cut(s) 119, 210, 240
BssNI GRCGYC 2 cut(s) 164, 588
BssT1I CCWWGG 1 cut(s) 720
Bst4CI ACNGT 4 cut(s) 72, 139, 475, 799
Bst6I CTCTTC 1 cut(s) 93
BstACI GRCGYC 2 cut(s) 164, 588
BstBAI YACGTR 2 cut(s) 228, 457
BstC8I GCNNGC 6 cut(s) 129, 222, 309, 318, 434, 489
BstDEI CTNAG 1 cut(s) 624
BstDSI CCRYGG 2 cut(s) 49, 720
BstF5I GGATG 2 cut(s) 288, 348
BstFNI CGCG 4 cut(s) 51, 233, 803, 825
BstHHI GCGC 2 cut(s) 233, 403
BstKTI GATC 3 cut(s) 122, 213, 243
BstMAI GTCTC 2 cut(s) 278, 718
BstMBI GATC 3 cut(s) 119, 210, 240
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 6 cut(s) 230, 304, 313, 317, 326, 488
BstNSI RCATGY 2 cut(s) 640, 688
BstSCI CCNGG 9 cut(s) 25, 236, 254, 255, 341, 351, 417, 595, 692
BstSLI GKGCMC 1 cut(s) 728
BstUI CGCG 4 cut(s) 51, 233, 803, 825
BstV1I GCAGC 1 cut(s) 550
BstX2I RGATCY 3 cut(s) 119, 210, 240
BstYI RGATCY 3 cut(s) 119, 210, 240
BstZI CGGCCG 1 cut(s) 46
BsuRI GGCC 8 cut(s) 48, 204, 236, 422, 439, 692, 697, 773
BtgI CCRYGG 2 cut(s) 49, 720
BtsCI GGATG 2 cut(s) 288, 348
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 1 cut(s) 396
BtuMI TCGCGA 1 cut(s) 803
Cac8I GCNNGC 6 cut(s) 129, 222, 309, 318, 434, 489
CciI TCATGA 1 cut(s) 90
CfoI GCGC 2 cut(s) 233, 403
Cfr10I RCCGGY 5 cut(s) 44, 177, 316, 335, 541
Cfr42I CCGCGG 1 cut(s) 52
Cfr9I CCCGGG 1 cut(s) 255
CseI GACGC 1 cut(s) 577
CviAII CATG 9 cut(s) 91, 364, 556, 565, 610, 637, 685, 721, 847
DdeI CTNAG 1 cut(s) 624
DpnI GATC 3 cut(s) 121, 212, 242
DpnII GATC 3 cut(s) 119, 210, 240
EaeI YGGCCR 2 cut(s) 46, 420
EagI CGGCCG 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
EciI GGCGGA 1 cut(s) 766
Ecl136II GAGCTC 1 cut(s) 838
EclXI CGGCCG 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 720
Eco24I GRGCYC 1 cut(s) 840
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 6 cut(s) 37, 57, 345, 460, 559, 613
Eco52I CGGCCG 1 cut(s) 46
Eco53kI GAGCTC 1 cut(s) 838
Eco72I CACGTG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 838
EcoT14I CCWWGG 1 cut(s) 720
EcoT38I GRGCYC 1 cut(s) 840
ErhI CCWWGG 1 cut(s) 720
Esp3I CGTCTC 1 cut(s) 718
FaeI CATG 9 cut(s) 94, 367, 559, 568, 613, 640, 688, 724, 850
FaqI GGGAC 7 cut(s) 42, 70, 358, 545, 599, 613, 613
FatI CATG 9 cut(s) 90, 363, 555, 564, 609, 636, 684, 720, 846
FauI CCCGC 2 cut(s) 47, 229
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 7 cut(s) 49, 52, 234, 330, 437, 536, 539
FokI GGATG 2 cut(s) 275, 335
FriOI GRGCYC 1 cut(s) 840
Fsp4HI GCNGC 7 cut(s) 49, 52, 234, 330, 437, 536, 539
GlaI GCGC 2 cut(s) 232, 402
GluI GCNGC 7 cut(s) 49, 52, 234, 330, 437, 536, 539
GsaI CCCAGC 4 cut(s) 266, 486, 653, 755
GsuI CTGGAG 2 cut(s) 323, 824
HaeIII GGCC 8 cut(s) 48, 204, 236, 422, 439, 692, 697, 773
HgaI GACGC 1 cut(s) 577
HhaI GCGC 2 cut(s) 233, 403
Hin1I GRCGYC 2 cut(s) 164, 588
Hin1II CATG 9 cut(s) 94, 367, 559, 568, 613, 640, 688, 724, 850
Hin6I GCGC 2 cut(s) 231, 401
HinP1I GCGC 2 cut(s) 231, 401
HincII GTYRAC 2 cut(s) 168, 373
HindII GTYRAC 2 cut(s) 168, 373
HinfI GANTC 2 cut(s) 62, 407
HphI GGTGA 2 cut(s) 157, 778
Hpy166II GTNNAC 6 cut(s) 37, 148, 168, 373, 460, 642
Hpy188I TCNGA 3 cut(s) 215, 277, 498
Hpy188III TCNNGA 3 cut(s) 14, 91, 802
Hpy8I GTNNAC 6 cut(s) 37, 148, 168, 373, 460, 642
Hpy99I CGWCG 5 cut(s) 169, 172, 281, 593, 803
HpyAV CCTTC 2 cut(s) 88, 718
HpyCH4III ACNGT 4 cut(s) 72, 139, 475, 799
HpyCH4IV ACGT 4 cut(s) 164, 227, 456, 602
HpyCH4V TGCA 1 cut(s) 444
HpyF10VI GCNNNNNNNGC 6 cut(s) 230, 304, 313, 317, 326, 488
HpyF3I CTNAG 1 cut(s) 624
HpySE526I ACGT 4 cut(s) 164, 227, 456, 602
Hsp92I GRCGYC 2 cut(s) 164, 588
Hsp92II CATG 9 cut(s) 94, 367, 559, 568, 613, 640, 688, 724, 850
HspAI GCGC 2 cut(s) 231, 401
KroI GCCGGC 1 cut(s) 316
KroNI GCCGGC 1 cut(s) 318
KspI CCGCGG 1 cut(s) 52
Kzo9I GATC 3 cut(s) 119, 210, 240
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 6 cut(s) 112, 259, 304, 496, 835, 843
Lsp1109I GCAGC 1 cut(s) 550
MaeII ACGT 4 cut(s) 164, 227, 456, 602
MaeIII GTNAC 2 cut(s) 72, 574
MalI GATC 3 cut(s) 121, 212, 242
MboI GATC 3 cut(s) 119, 210, 240
MboII GAAGA 4 cut(s) 110, 114, 235, 598
MflI RGATCY 3 cut(s) 119, 210, 240
MhlI GDGCHC 3 cut(s) 309, 728, 840
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 300
MroNI GCCGGC 1 cut(s) 316
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 188
MspA1I CMGCKG 2 cut(s) 51, 250
MspR9I CCNGG 9 cut(s) 27, 238, 256, 257, 343, 353, 419, 597, 694
Mva1269I GAATGC 1 cut(s) 222
MvnI CGCG 4 cut(s) 51, 233, 803, 825
MwoI GCNNNNNNNGC 6 cut(s) 230, 304, 313, 317, 326, 488
NaeI GCCGGC 1 cut(s) 318
NciI CCSGG 9 cut(s) 27, 238, 256, 257, 343, 353, 419, 597, 694
NcoI CCATGG 1 cut(s) 720
NdeII GATC 3 cut(s) 119, 210, 240
NgoMIV GCCGGC 1 cut(s) 316
NlaIII CATG 9 cut(s) 94, 367, 559, 568, 613, 640, 688, 724, 850
NlaIV GGNNCC 9 cut(s) 39, 58, 212, 340, 346, 492, 561, 615, 727
NmeAIII GCCGAG 1 cut(s) 337
NmuCI GTSAC 2 cut(s) 72, 574
NruI TCGCGA 1 cut(s) 803
NspI RCATGY 2 cut(s) 640, 688
OliI CACNNNNGTG 1 cut(s) 188
PagI TCATGA 1 cut(s) 90
PciI ACATGT 2 cut(s) 636, 684
PciSI GCTCTTC 1 cut(s) 93
PctI GAATGC 1 cut(s) 222
PdiI GCCGGC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 62
PflMI CCANNNNNTGG 2 cut(s) 294, 556
PkrI GCNGC 7 cut(s) 50, 53, 235, 331, 438, 537, 540
PleI GAGTC 1 cut(s) 401
PmaCI CACGTG 1 cut(s) 228
PmlI CACGTG 1 cut(s) 228
PpsI GAGTC 1 cut(s) 401
Ppu21I YACGTR 2 cut(s) 228, 457
PscI ACATGT 2 cut(s) 636, 684
Psp124BI GAGCTC 1 cut(s) 840
PspCI CACGTG 1 cut(s) 228
PspFI CCCAGC 4 cut(s) 262, 482, 649, 751
PspN4I GGNNCC 9 cut(s) 39, 58, 212, 340, 346, 492, 561, 615, 727
PsuI RGATCY 3 cut(s) 119, 210, 240
PvuII CAGCTG 1 cut(s) 250
RruI TCGCGA 1 cut(s) 803
RseI CAYNNNNRTG 1 cut(s) 188
SacI GAGCTC 1 cut(s) 840
SacII CCGCGG 1 cut(s) 52
SalI GTCGAC 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 7 cut(s) 49, 52, 234, 330, 437, 536, 539
Sau3AI GATC 3 cut(s) 119, 210, 240
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 9 cut(s) 27, 238, 256, 257, 343, 353, 419, 597, 694
SduI GDGCHC 3 cut(s) 309, 728, 840
Sfr303I CCGCGG 1 cut(s) 52
SgrBI CCGCGG 1 cut(s) 52
SgrDI CGTCGACG 1 cut(s) 166
SinI GGWCC 6 cut(s) 37, 57, 345, 460, 559, 613
SmaI CCCGGG 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 840
StyD4I CCNGG 9 cut(s) 25, 236, 254, 255, 341, 351, 417, 595, 692
StyI CCWWGG 1 cut(s) 720
TaaI ACNGT 4 cut(s) 72, 139, 475, 799
TaiI ACGT 4 cut(s) 167, 230, 459, 605
TaqI TCGA 1 cut(s) 167
TaqII GACCGA 1 cut(s) 74
TauI GCSGC 6 cut(s) 51, 54, 236, 332, 439, 538
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 2 cut(s) 72, 574
TseI GCWGC 1 cut(s) 538
Tsp45I GTSAC 2 cut(s) 72, 574
TspDTI ATGAA 3 cut(s) 107, 598, 835
TspGWI ACGGA 3 cut(s) 175, 358, 848
TspMI CCCGGG 1 cut(s) 255
TspRI CASTG 1 cut(s) 403
Van91I CCANNNNNTGG 2 cut(s) 294, 556
VpaK11BI GGWCC 6 cut(s) 37, 57, 345, 460, 559, 613
XceI RCATGY 2 cut(s) 640, 688
XmaI CCCGGG 1 cut(s) 255
XmiI GTMKAC 1 cut(s) 167
ZraI GACGTC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.