MD02G1196100.v1.1
TCP Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
18841493 .. 18842398
906 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1196100.v1.1.491

Sequence Viewer

Length: 906 bp
ATGGACATGATTCAAGAAGAACAGCAACATGAACGAGACCGAGACCAGGACGAAGAAGCCTCAGCAGCCGATCTCGGAATTGACGGCGGAGAAGAATCCGACCCAGAAGACCCCGCTGACCCCTCTCGGGCTCTCGCGCTGCCGCCGAAGCAGGAGCAAGACGTACCAATGACGGTGGCGGTGCACGCGCCCAGGAGAGCGTCGACCAAGGACCGACACACGAAGGTTGAGGGCCGGGGACGGAGGATCCGAATGCCTGCCACGTGCGCGGCTCGGATCTTCCAGCTGACCCGGGAGCTCGGGCACAAGTCCGATGGGGACACAATACAGTGGCTTCTGGAGCACGCCGAGCCGGCTATCATCGCCGCCACAGGCACCGGAACGGTGCCGGCGATTGCTATATCCGTGAACGGGTCGCTTAAAATCCCCACTGACGTGAGACCCGGGGACGACCCTCCCGACCAGAAGAAACGCAAGCGCAACTCCAACAGCGAGTACGTGGACTTAAACGACGGCGTCTCAGTGTCGGCGGGTTTAGCCCCTTTAACAACGGAAGGACGACGACAACCACCAGCACCACAACCACCGACAACAGCTGTACAAGCGGTGGCGCCTCAAGGCATGGTCCCCATGTGGGCCATACCGTCAAACACCGTCGTTCCGGGAGCTTTCTTCATGGTCCCCTCGATGACCCAACCTCACATATTTACGTTTCCAACCACTCTCCCCGCCGCTCCTTTCATCAACATCTCGGCCAGACCCATATCCTCCTTCGTTGGTCCCAGTTCGGCGGCTCCGGCCACCGCAACGAGCAGTGGCGGCGGCACTCAGACGCTGAGGGACTTCTCGCTGGAAATTTTCGACAAAAAGGAGCTACAATTCATGTCTGGCTCTTCAAATCACTGA

Protein Analysis

302

Amino Acids

32.24

Weight (kDa)

5.3

Isoelectric Point (pI)

60.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 68 - 147 1.8e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45680
fragaria_vesca FvH4_7g12810
malus_domestica MD02G1196100.v1.1
prunus_persica Prupe.2G152600_v2.0.a1
pyrus_communis pycom02g15980
rosa_chinensis RchiOBHm_Chr1g0351841
rosa_laevigata RLG00000028378
rosa_multiflora Rmu_co8473567.1_g000001 Rmu_sc0001933.1_g000007
rosa_rugosa Rorug01G0222200
rosa_samantha Rh1AG236100 Rh1BG206600 Rh1CG220600 Rh1DG233600
rosa_wichuraiana Rw1G020550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 374, 385, 610
AccBSI CCGCTC 1 cut(s) 734
AccI GTMKAC 1 cut(s) 203
AccII CGCG 3 cut(s) 137, 188, 269
AclWI GGATC 3 cut(s) 241, 254, 284
AcoI YGGCCR 2 cut(s) 753, 798
AcsI RAATTY 1 cut(s) 855
AcvI CACGTG 1 cut(s) 264
AcyI GRCGYC 2 cut(s) 516, 611
AfaI GTAC 3 cut(s) 165, 497, 600
AfiI CCNNNNNNNGG 4 cut(s) 46, 127, 411, 634
AgsI TTSAA 2 cut(s) 14, 897
AjiI CACGTC 1 cut(s) 436
AjnI CCWGG 2 cut(s) 45, 191
AleI CACNNNNGTG 1 cut(s) 434
AluBI AGCT 5 cut(s) 286, 298, 596, 668, 874
AluI AGCT 5 cut(s) 286, 298, 596, 668, 874
Alw21I GWGCWC 3 cut(s) 186, 300, 345
Alw26I GTCTC 4 cut(s) 30, 36, 433, 523
Alw44I GTGCAC 1 cut(s) 182
AlwI GGATC 3 cut(s) 241, 254, 284
AlwNI CAGNNNCTG 1 cut(s) 835
Ama87I CYCGRG 4 cut(s) 126, 291, 299, 443
AoxI GGCC 4 cut(s) 232, 636, 753, 798
ApaLI GTGCAC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 65, 139
ApoI RAATTY 1 cut(s) 855
AspLEI GCGC 5 cut(s) 139, 190, 269, 480, 613
AspS9I GGNCC 6 cut(s) 211, 232, 625, 636, 679, 779
AsuC2I CCSGG 6 cut(s) 236, 292, 293, 444, 445, 663
AvaI CYCGRG 4 cut(s) 126, 291, 299, 443
AvaII GGWCC 4 cut(s) 211, 625, 679, 779
BaeGI GKGCMC 2 cut(s) 186, 306
BamHI GGATCC 1 cut(s) 246
BanI GGYRCC 3 cut(s) 374, 385, 610
BanII GRGCYC 2 cut(s) 133, 300
BbrPI CACGTG 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 3 cut(s) 186, 300, 345
BbvCI CCTCAGC 2 cut(s) 61, 836
BbvI GCAGC 2 cut(s) 77, 126
BccI CCATC 1 cut(s) 308
BceAI ACGGC 2 cut(s) 100, 529
BciT130I CCWGG 2 cut(s) 47, 193
BcnI CCSGG 6 cut(s) 236, 292, 293, 444, 445, 663
BcoDI GTCTC 4 cut(s) 30, 36, 433, 523
BfoI RGCGCY 1 cut(s) 614
BglI GCCNNNNNGGC 1 cut(s) 353
BisI GCNGC 9 cut(s) 66, 140, 143, 270, 366, 732, 792, 820, 823
BlsI GCNGC 9 cut(s) 67, 141, 144, 271, 367, 733, 793, 821, 824
Bme1390I CCNGG 8 cut(s) 47, 193, 236, 292, 293, 444, 445, 663
Bme18I GGWCC 4 cut(s) 211, 625, 679, 779
BmeT110I CYCGRG 4 cut(s) 126, 291, 299, 443
BmgBI CACGTC 1 cut(s) 436
BmgT120I GGNCC 6 cut(s) 211, 232, 625, 636, 679, 779
BmiI GGNNCC 8 cut(s) 248, 376, 387, 612, 627, 681, 781, 795
BmrFI CCNGG 8 cut(s) 47, 193, 236, 292, 293, 444, 445, 663
BmrI ACTGGG 1 cut(s) 777
BmuI ACTGGG 1 cut(s) 777
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 359
Bpu10I CCTNAGC 2 cut(s) 61, 836
BpuEI CTTGAG 1 cut(s) 600
BpuMI CCSGG 6 cut(s) 236, 292, 293, 444, 445, 663
BsaAI YACGTR 2 cut(s) 264, 499
BsaHI GRCGYC 2 cut(s) 516, 611
BsaI GGTCTC 3 cut(s) 30, 36, 433
BsaJI CCNNGG 6 cut(s) 191, 207, 235, 291, 443, 444
BsaWI WCCGGW 1 cut(s) 377
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 127, 411, 634
Bse118I RCCGGY 2 cut(s) 352, 388
Bse1I ACTGG 1 cut(s) 783
BseBI CCWGG 2 cut(s) 47, 193
BseDI CCNNGG 6 cut(s) 191, 207, 235, 291, 443, 444
BseLI CCNNNNNNNGG 4 cut(s) 46, 127, 411, 634
BseMII CTCAG 4 cut(s) 75, 534, 827, 842
BseNI ACTGG 1 cut(s) 783
BseSI GKGCMC 2 cut(s) 186, 306
BseXI GCAGC 2 cut(s) 77, 126
Bsh1236I CGCG 3 cut(s) 137, 188, 269
BshFI GGCC 4 cut(s) 234, 638, 755, 800
BshNI GGYRCC 3 cut(s) 374, 385, 610
BsiHKAI GWGCWC 3 cut(s) 186, 300, 345
BsiHKCI CYCGRG 4 cut(s) 126, 291, 299, 443
BsiSI CCGG 8 cut(s) 235, 292, 353, 378, 389, 444, 662, 797
BslFI GGGAC 7 cut(s) 252, 332, 461, 611, 665, 765, 854
BslI CCNNNNNNNGG 4 cut(s) 46, 127, 411, 634
BsmAI GTCTC 4 cut(s) 30, 36, 433, 523
BsmBI CGTCTC 1 cut(s) 523
BsmFI GGGAC 7 cut(s) 252, 332, 461, 611, 665, 765, 854
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 4 cut(s) 234, 638, 755, 800
Bso31I GGTCTC 3 cut(s) 30, 36, 433
BsoBI CYCGRG 4 cut(s) 126, 291, 299, 443
Bsp1286I GDGCHC 5 cut(s) 133, 186, 300, 306, 345
Bsp1407I TGTACA 1 cut(s) 598
Bsp143I GATC 3 cut(s) 70, 246, 276
BspANI GGCC 4 cut(s) 234, 638, 755, 800
BspCNI CTCAG 4 cut(s) 74, 533, 828, 841
BspFNI CGCG 3 cut(s) 137, 188, 269
BspLI GGNNCC 8 cut(s) 248, 376, 387, 612, 627, 681, 781, 795
BspPI GGATC 3 cut(s) 241, 254, 284
BspQI GCTCTTC 1 cut(s) 898
BspT107I GGYRCC 3 cut(s) 374, 385, 610
BspTNI GGTCTC 3 cut(s) 30, 36, 433
BsrBI CCGCTC 1 cut(s) 734
BsrFI RCCGGY 2 cut(s) 352, 388
BsrGI TGTACA 1 cut(s) 598
BsrI ACTGG 1 cut(s) 783
BssAI RCCGGY 2 cut(s) 352, 388
BssECI CCNNGG 6 cut(s) 191, 207, 235, 291, 443, 444
BssMI GATC 3 cut(s) 70, 246, 276
BssNI GRCGYC 2 cut(s) 516, 611
BssT1I CCWWGG 1 cut(s) 207
Bst2UI CCWGG 2 cut(s) 47, 193
Bst4CI ACNGT 5 cut(s) 175, 330, 385, 645, 655
Bst6I CTCTTC 1 cut(s) 898
BstACI GRCGYC 2 cut(s) 516, 611
BstAUI TGTACA 1 cut(s) 598
BstBAI YACGTR 2 cut(s) 264, 499
BstC8I GCNNGC 6 cut(s) 186, 258, 345, 354, 390, 476
BstDEI CTNAG 4 cut(s) 61, 520, 828, 836
BstFNI CGCG 3 cut(s) 137, 188, 269
BstH2I RGCGCY 1 cut(s) 614
BstHHI GCGC 5 cut(s) 139, 190, 269, 480, 613
BstKTI GATC 3 cut(s) 73, 249, 279
BstMAI GTCTC 4 cut(s) 30, 36, 433, 523
BstMBI GATC 3 cut(s) 70, 246, 276
BstNI CCWGG 2 cut(s) 47, 193
BstSCI CCNGG 8 cut(s) 45, 191, 234, 290, 291, 442, 443, 661
BstSLI GKGCMC 2 cut(s) 186, 306
BstUI CGCG 3 cut(s) 137, 188, 269
BstV1I GCAGC 2 cut(s) 77, 126
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 2 cut(s) 246, 276
BstYI RGATCY 2 cut(s) 246, 276
BsuRI GGCC 4 cut(s) 234, 638, 755, 800
BtgZI GCGATG 1 cut(s) 346
BtrI CACGTC 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 820
BtsIMutI CAGTG 5 cut(s) 335, 429, 528, 820, 901
Cac8I GCNNGC 6 cut(s) 186, 258, 345, 354, 390, 476
CaiI CAGNNNCTG 1 cut(s) 835
CfoI GCGC 5 cut(s) 139, 190, 269, 480, 613
Cfr10I RCCGGY 2 cut(s) 352, 388
Cfr13I GGNCC 6 cut(s) 211, 232, 625, 636, 679, 779
Cfr9I CCCGGG 2 cut(s) 291, 443
CseI GACGC 3 cut(s) 189, 505, 841
Csp6I GTAC 3 cut(s) 164, 496, 599
CspCI CAANNNNNGTGG 2 cut(s) 156, 191
CviAII CATG 6 cut(s) 7, 29, 622, 631, 676, 883
CviQI GTAC 3 cut(s) 164, 496, 599
DdeI CTNAG 4 cut(s) 61, 520, 828, 836
DinI GGCGCC 1 cut(s) 612
DpnI GATC 3 cut(s) 72, 248, 278
DpnII GATC 3 cut(s) 70, 246, 276
EaeI YGGCCR 2 cut(s) 753, 798
Eam1104I CTCTTC 1 cut(s) 898
EarI CTCTTC 1 cut(s) 898
EciI GGCGGA 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 207
Eco24I GRGCYC 2 cut(s) 133, 300
Eco31I GGTCTC 3 cut(s) 30, 36, 433
Eco47I GGWCC 4 cut(s) 211, 625, 679, 779
Eco53kI GAGCTC 1 cut(s) 298
Eco72I CACGTG 1 cut(s) 264
Eco88I CYCGRG 4 cut(s) 126, 291, 299, 443
EcoICRI GAGCTC 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 45, 191
EcoT14I CCWWGG 1 cut(s) 207
EcoT38I GRGCYC 2 cut(s) 133, 300
EgeI GGCGCC 1 cut(s) 612
EheI GGCGCC 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 207
Esp3I CGTCTC 1 cut(s) 523
FaeI CATG 6 cut(s) 10, 32, 625, 634, 679, 886
FaqI GGGAC 7 cut(s) 252, 332, 461, 611, 665, 765, 854
FatI CATG 6 cut(s) 6, 28, 621, 630, 675, 882
FauI CCCGC 3 cut(s) 121, 523, 736
FblI GTMKAC 1 cut(s) 203
Fnu4HI GCNGC 9 cut(s) 66, 140, 143, 270, 366, 732, 792, 820, 823
FriOI GRGCYC 2 cut(s) 133, 300
Fsp4HI GCNGC 9 cut(s) 66, 140, 143, 270, 366, 732, 792, 820, 823
GlaI GCGC 5 cut(s) 138, 189, 268, 479, 612
GluI GCNGC 9 cut(s) 66, 140, 143, 270, 366, 732, 792, 820, 823
GsuI CTGGAG 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 614
HaeIII GGCC 4 cut(s) 234, 638, 755, 800
HapII CCGG 8 cut(s) 235, 292, 353, 378, 389, 444, 662, 797
HgaI GACGC 3 cut(s) 189, 505, 841
HhaI GCGC 5 cut(s) 139, 190, 269, 480, 613
Hin1I GRCGYC 2 cut(s) 516, 611
Hin1II CATG 6 cut(s) 10, 32, 625, 634, 679, 886
Hin6I GCGC 5 cut(s) 137, 188, 267, 478, 611
HinP1I GCGC 5 cut(s) 137, 188, 267, 478, 611
HincII GTYRAC 1 cut(s) 204
HindII GTYRAC 1 cut(s) 204
HinfI GANTC 2 cut(s) 10, 95
HpaII CCGG 8 cut(s) 235, 292, 353, 378, 389, 444, 662, 797
Hpy166II GTNNAC 4 cut(s) 184, 204, 409, 502
Hpy188I TCNGA 6 cut(s) 77, 100, 251, 276, 313, 831
Hpy188III TCNNGA 3 cut(s) 14, 338, 458
Hpy8I GTNNAC 4 cut(s) 184, 204, 409, 502
Hpy99I CGWCG 4 cut(s) 205, 515, 564, 659
HpyAV CCTTC 3 cut(s) 217, 548, 781
HpyCH4III ACNGT 5 cut(s) 175, 330, 385, 645, 655
HpyCH4IV ACGT 5 cut(s) 162, 263, 435, 498, 710
HpyCH4V TGCA 1 cut(s) 184
HpyF3I CTNAG 4 cut(s) 61, 520, 828, 836
HpySE526I ACGT 5 cut(s) 162, 263, 435, 498, 710
Hsp92I GRCGYC 2 cut(s) 516, 611
Hsp92II CATG 6 cut(s) 10, 32, 625, 634, 679, 886
HspAI GCGC 5 cut(s) 137, 188, 267, 478, 611
KasI GGCGCC 1 cut(s) 610
KroI GCCGGC 2 cut(s) 352, 388
KroNI GCCGGC 2 cut(s) 354, 390
Kzo9I GATC 3 cut(s) 70, 246, 276
LguI GCTCTTC 1 cut(s) 898
LmnI GCTCC 7 cut(s) 154, 295, 340, 665, 739, 799, 871
Lsp1109I GCAGC 2 cut(s) 77, 126
MaeII ACGT 5 cut(s) 162, 263, 435, 498, 710
MalI GATC 3 cut(s) 72, 248, 278
MbiI CCGCTC 1 cut(s) 734
MboI GATC 3 cut(s) 70, 246, 276
MboII GAAGA 8 cut(s) 29, 65, 104, 119, 271, 478, 664, 885
MflI RGATCY 2 cut(s) 246, 276
MhlI GDGCHC 5 cut(s) 133, 186, 300, 306, 345
MluCI AATT 3 cut(s) 78, 855, 878
Mly113I GGCGCC 1 cut(s) 611
MmeI TCCRAC 3 cut(s) 123, 510, 740
MroNI GCCGGC 2 cut(s) 352, 388
MseI TTAA 3 cut(s) 420, 506, 545
MslI CAYNNNNRTG 1 cut(s) 434
MspA1I CMGCKG 3 cut(s) 116, 286, 596
MspI CCGG 8 cut(s) 235, 292, 353, 378, 389, 444, 662, 797
MspR9I CCNGG 8 cut(s) 47, 193, 236, 292, 293, 444, 445, 663
Mva1269I GAATGC 1 cut(s) 258
MvaI CCWGG 2 cut(s) 47, 193
MvnI CGCG 3 cut(s) 137, 188, 269
NaeI GCCGGC 2 cut(s) 354, 390
NarI GGCGCC 1 cut(s) 611
NciI CCSGG 6 cut(s) 236, 292, 293, 444, 445, 663
NdeII GATC 3 cut(s) 70, 246, 276
NgoMIV GCCGGC 2 cut(s) 352, 388
NlaIII CATG 6 cut(s) 10, 32, 625, 634, 679, 886
NlaIV GGNNCC 8 cut(s) 248, 376, 387, 612, 627, 681, 781, 795
NmeAIII GCCGAG 2 cut(s) 373, 731
OliI CACNNNNGTG 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 898
PcsI WCGNNNNNNNCGW 3 cut(s) 247, 389, 456
PctI GAATGC 1 cut(s) 258
PdiI GCCGGC 2 cut(s) 354, 390
PfeI GAWTC 2 cut(s) 10, 95
PflFI GACNNNGTC 1 cut(s) 515
PfoI TCCNGGA 1 cut(s) 661
PkrI GCNGC 9 cut(s) 67, 141, 144, 271, 367, 733, 793, 821, 824
PluTI GGCGCC 1 cut(s) 614
PmaCI CACGTG 1 cut(s) 264
PmlI CACGTG 1 cut(s) 264
Ppu21I YACGTR 2 cut(s) 264, 499
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 45, 191
PspCI CACGTG 1 cut(s) 264
PspGI CCWGG 2 cut(s) 45, 191
PspN4I GGNNCC 8 cut(s) 248, 376, 387, 612, 627, 681, 781, 795
PspPI GGNCC 6 cut(s) 211, 232, 625, 636, 679, 779
PstNI CAGNNNCTG 1 cut(s) 835
PsuI RGATCY 2 cut(s) 246, 276
PsyI GACNNNGTC 1 cut(s) 515
PvuII CAGCTG 2 cut(s) 286, 596
RsaI GTAC 3 cut(s) 165, 497, 600
RsaNI GTAC 3 cut(s) 164, 496, 599
RseI CAYNNNNRTG 1 cut(s) 434
SacI GAGCTC 1 cut(s) 300
SalI GTCGAC 1 cut(s) 202
SapI GCTCTTC 1 cut(s) 898
SaqAI TTAA 3 cut(s) 420, 506, 545
SatI GCNGC 9 cut(s) 66, 140, 143, 270, 366, 732, 792, 820, 823
Sau3AI GATC 3 cut(s) 70, 246, 276
Sau96I GGNCC 6 cut(s) 211, 232, 625, 636, 679, 779
ScrFI CCNGG 8 cut(s) 47, 193, 236, 292, 293, 444, 445, 663
SduI GDGCHC 5 cut(s) 133, 186, 300, 306, 345
SfoI GGCGCC 1 cut(s) 612
SinI GGWCC 4 cut(s) 211, 625, 679, 779
SmaI CCCGGG 2 cut(s) 293, 445
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 615
SmoI CTYRAG 1 cut(s) 615
Sse9I AATT 3 cut(s) 78, 855, 878
SspDI GGCGCC 1 cut(s) 610
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 8 cut(s) 45, 191, 234, 290, 291, 442, 443, 661
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 5 cut(s) 175, 330, 385, 645, 655
TaiI ACGT 5 cut(s) 165, 266, 438, 501, 713
TaqI TCGA 3 cut(s) 203, 686, 861
TaqII GACCGA 2 cut(s) 54, 228
TasI AATT 3 cut(s) 78, 855, 878
TatI WGTACW 1 cut(s) 598
TauI GCSGC 7 cut(s) 145, 272, 368, 734, 794, 822, 825
TfiI GAWTC 2 cut(s) 10, 95
Tru1I TTAA 3 cut(s) 420, 506, 545
Tru9I TTAA 3 cut(s) 420, 506, 545
TscAI CASTG 4 cut(s) 335, 436, 528, 820
TseI GCWGC 2 cut(s) 65, 139
TspDTI ATGAA 4 cut(s) 45, 664, 730, 871
TspGWI ACGGA 3 cut(s) 256, 394, 566
TspMI CCCGGG 2 cut(s) 291, 443
TspRI CASTG 4 cut(s) 335, 436, 528, 820
Tth111I GACNNNGTC 1 cut(s) 515
VneI GTGCAC 1 cut(s) 182
VpaK11BI GGWCC 4 cut(s) 211, 625, 679, 779
XapI RAATTY 1 cut(s) 855
XmaI CCCGGG 2 cut(s) 291, 443
XmiI GTMKAC 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.