RLG00000028378
TCP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015863
Physical Location & Seq
Forward (+)
22021589 .. 22023921
2333 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028378

Sequence Viewer

Length: 1119 bp
ATGCTTCAAAACCAAGAACATGAACCCGGCCAACACACCGCAGCCGCCGCAGGAGTGGACCCCACCGACCGCGCCGAGACCGATTCTCCGCCGTCTCAGGCTCTTGTCCTGAAGGAAGAGCAAGAGCCAGAGCAGAGGTCGCCGGCGCTGACGGTGGCGGTGACCAAGCCGAAACGGTCGTCGACGAAGGACCGGCACACGAAGGTTGAGGGCCGCGGCCGCAGGATCCGAATGCCCGCCACGTGCGCGGCCCGGATCTTCCAGCTGACCCGGGAGCTCGGGCACAAGTCCGACGGCGAGACCATCCGGTGGCTGCTCGAGCACGCCGAGCCGGCGATAATAGCGGCCACCGGCACCGGAACCGTCCCGGCAATCGCCATGTCCGTCAACGGGTCCCTCAAAATCCCCACCACCGCGCCCGACCCGAAACCCGGCGACCCGTCGAAGAAACGCAAACGTCCTTGCAACAGCGACTACGTGGACCTAAACGACAGCGTTTCGGCTGGCCTGGCTCCTCTGACCGCGACCACCCTCCAACAACCGACACCGCCACAGCCGGTTCACCAAAGCATGGTCCCCATGTGGGCCGTAACCTCAAACGGCGTCGTTCCGGGGACCTTCTTCATGGTCCCTCAAACGCAGGCCCCCCACCTATTTACATTCCCGGCCACAGCCGCCGCCTCGCCTTTCCTCAACATGTCGGCCCGGCCCATCTCCTCCTTCGTCTCCTCCATGGGCAACGTCGTCGCTCCGGTCTCCAATACGCTGTCGTTTATGTCCCCCGTTTCGTCTCCCCCAGCCTCCGCCACCATAACGAACAGCACCGACGCGACGACCACCACTCTCCGAGACTTCTCGCTGGAAATCCGCGACAAAACGGAGCTCCAATTCATGTCCGGGATGAACACCATGGCACCAAAGCTCGGAAAGACAACCTTTGGAAGGTCCCCCAGAGTAGAACATCAAGAGTCTATGCACAACAACGAGAAAAGGATGAGGGGGACAAAGTACTCTCCAAGATCATTAGATAGAGGTGAAGTAAAGACAGGGTGCGTGTTTGTGCCTCCACCGACCTCGGCACCCACATTGGTCTTTGTCGTCGATGCTGCTAGAGGATGA

Protein Analysis

373

Amino Acids

39.97

Weight (kDa)

9.4

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCP PF03634 61 - 132 8.2e-26 TCP family transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015863)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45680
fragaria_vesca FvH4_7g12810
malus_domestica MD02G1196100.v1.1
prunus_persica Prupe.2G152600_v2.0.a1
pyrus_communis pycom02g15980
rosa_chinensis RchiOBHm_Chr1g0351841
rosa_laevigata RLG00000028378
rosa_multiflora Rmu_co8473567.1_g000001 Rmu_sc0001933.1_g000007
rosa_rugosa Rorug01G0222200
rosa_samantha Rh1AG236100 Rh1BG206600 Rh1CG220600 Rh1DG233600
rosa_wichuraiana Rw1G020550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 353, 913, 1078
AccB7I CCANNNNNTGG 2 cut(s) 309, 571
AccI GTMKAC 1 cut(s) 182
AccII CGCG 7 cut(s) 72, 216, 248, 416, 524, 830, 870
AclWI GGATC 3 cut(s) 220, 233, 263
AcoI YGGCCR 4 cut(s) 28, 217, 345, 666
AcuI CTGAAG 1 cut(s) 131
AcvI CACGTG 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 1 cut(s) 1010
AfiI CCNNNNNNNGG 7 cut(s) 309, 390, 431, 571, 583, 923, 942
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 1 cut(s) 8
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 4 cut(s) 265, 277, 883, 922
AluI AGCT 4 cut(s) 265, 277, 883, 922
Alw21I GWGCWC 3 cut(s) 279, 324, 885
Alw26I GTCTC 7 cut(s) 71, 99, 293, 730, 760, 795, 843
AlwI GGATC 3 cut(s) 220, 233, 263
Ama87I CYCGRG 3 cut(s) 270, 278, 317
ApeKI GCWGC 3 cut(s) 41, 313, 1106
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspLEI GCGC 4 cut(s) 74, 148, 248, 418
AsuHPI GGTGA 3 cut(s) 172, 554, 1046
AvaI CYCGRG 3 cut(s) 270, 278, 317
AvaII GGWCC 8 cut(s) 58, 190, 393, 481, 574, 615, 628, 945
BaeGI GKGCMC 1 cut(s) 285
BamHI GGATCC 1 cut(s) 225
BanI GGYRCC 3 cut(s) 353, 913, 1078
BanII GRGCYC 2 cut(s) 279, 885
BbrPI CACGTG 1 cut(s) 243
Bbv12I GWGCWC 3 cut(s) 279, 324, 885
BbvI GCAGC 3 cut(s) 53, 300, 1093
BccI CCATC 2 cut(s) 311, 719
BceAI ACGGC 4 cut(s) 76, 310, 572, 616
BcgI CGANNNNNNTGC 2 cut(s) 727, 761
BciT130I CCWGG 1 cut(s) 509
BcoDI GTCTC 7 cut(s) 71, 99, 293, 730, 760, 795, 843
BfaI CTAG 1 cut(s) 1110
BfoI RGCGCY 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 332
BmcAI AGTACT 1 cut(s) 1010
Bme18I GGWCC 8 cut(s) 58, 190, 393, 481, 574, 615, 628, 945
BmeT110I CYCGRG 3 cut(s) 270, 278, 317
BmsI GCATC 1 cut(s) 1093
BsaAI YACGTR 2 cut(s) 243, 478
BsaHI GRCGYC 1 cut(s) 603
BsaI GGTCTC 3 cut(s) 71, 293, 760
BsaJI CCNNGG 6 cut(s) 214, 270, 611, 732, 909, 1074
BsaWI WCCGGW 3 cut(s) 306, 356, 751
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 7 cut(s) 309, 390, 431, 571, 583, 923, 942
Bse118I RCCGGY 5 cut(s) 142, 192, 331, 350, 556
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 6 cut(s) 214, 270, 611, 732, 909, 1074
BseGI GGATG 3 cut(s) 303, 906, 999
BseLI CCNNNNNNNGG 7 cut(s) 309, 390, 431, 571, 583, 923, 942
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 3 cut(s) 504, 706, 718
BseSI GKGCMC 1 cut(s) 285
BseX3I CGGCCG 1 cut(s) 217
BseXI GCAGC 3 cut(s) 53, 300, 1093
BseYI CCCAGC 1 cut(s) 796
Bsh1236I CGCG 7 cut(s) 72, 216, 248, 416, 524, 830, 870
Bsh1285I CGRYCG 3 cut(s) 70, 179, 220
BshNI GGYRCC 3 cut(s) 353, 913, 1078
BsiEI CGRYCG 3 cut(s) 70, 179, 220
BsiHKAI GWGCWC 3 cut(s) 279, 324, 885
BsiHKCI CYCGRG 3 cut(s) 270, 278, 317
BslFI GGGAC 8 cut(s) 350, 379, 560, 614, 628, 763, 931, 1015
BslI CCNNNNNNNGG 7 cut(s) 309, 390, 431, 571, 583, 923, 942
BsmAI GTCTC 7 cut(s) 71, 99, 293, 730, 760, 795, 843
BsmBI CGTCTC 3 cut(s) 99, 730, 795
BsmFI GGGAC 8 cut(s) 350, 379, 560, 614, 628, 763, 931, 1015
BsmI GAATGC 1 cut(s) 237
Bso31I GGTCTC 3 cut(s) 71, 293, 760
BsoBI CYCGRG 3 cut(s) 270, 278, 317
Bsp1286I GDGCHC 4 cut(s) 279, 285, 324, 885
Bsp143I GATC 3 cut(s) 225, 255, 1019
Bsp19I CCATGG 2 cut(s) 732, 909
BspCNI CTCAG 1 cut(s) 109
BspFNI CGCG 7 cut(s) 72, 216, 248, 416, 524, 830, 870
BspPI GGATC 3 cut(s) 220, 233, 263
BspQI GCTCTTC 1 cut(s) 111
BspT107I GGYRCC 3 cut(s) 353, 913, 1078
BspTNI GGTCTC 3 cut(s) 71, 293, 760
BsrFI RCCGGY 5 cut(s) 142, 192, 331, 350, 556
BssAI RCCGGY 5 cut(s) 142, 192, 331, 350, 556
BssECI CCNNGG 6 cut(s) 214, 270, 611, 732, 909, 1074
BssMI GATC 3 cut(s) 225, 255, 1019
BssNI GRCGYC 1 cut(s) 603
BssT1I CCWWGG 2 cut(s) 732, 909
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 3 cut(s) 154, 177, 364
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 603
BstBAI YACGTR 2 cut(s) 243, 478
BstC8I GCNNGC 6 cut(s) 144, 237, 324, 333, 505, 642
BstDEI CTNAG 1 cut(s) 96
BstDSI CCRYGG 3 cut(s) 214, 732, 909
BstEII GGTNACC 1 cut(s) 160
BstENI CCTNNNNNAGG 1 cut(s) 940
BstF5I GGATG 3 cut(s) 303, 906, 999
BstFNI CGCG 7 cut(s) 72, 216, 248, 416, 524, 830, 870
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 4 cut(s) 74, 148, 248, 418
BstKTI GATC 3 cut(s) 228, 258, 1022
BstMAI GTCTC 7 cut(s) 71, 99, 293, 730, 760, 795, 843
BstMBI GATC 3 cut(s) 225, 255, 1019
BstMCI CGRYCG 3 cut(s) 70, 179, 220
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 700
BstPI GGTNACC 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 7 cut(s) 72, 216, 248, 416, 524, 830, 870
BstV1I GCAGC 3 cut(s) 53, 300, 1093
BstX2I RGATCY 2 cut(s) 225, 255
BstYI RGATCY 2 cut(s) 225, 255
BstZI CGGCCG 1 cut(s) 217
BtgI CCRYGG 3 cut(s) 214, 732, 909
BtsCI GGATG 3 cut(s) 303, 906, 999
Cac8I GCNNGC 6 cut(s) 144, 237, 324, 333, 505, 642
CciNI GCGGCCGC 1 cut(s) 217
CfoI GCGC 4 cut(s) 74, 148, 248, 418
Cfr10I RCCGGY 5 cut(s) 142, 192, 331, 350, 556
Cfr42I CCGCGG 1 cut(s) 217
Cfr9I CCCGGG 1 cut(s) 270
CseI GACGC 2 cut(s) 592, 836
Csp6I GTAC 1 cut(s) 1009
CviAII CATG 9 cut(s) 20, 379, 571, 580, 625, 697, 733, 892, 910
CviQI GTAC 1 cut(s) 1009
DdeI CTNAG 1 cut(s) 96
DpnI GATC 3 cut(s) 227, 257, 1021
DpnII GATC 3 cut(s) 225, 255, 1019
EaeI YGGCCR 4 cut(s) 28, 217, 345, 666
EagI CGGCCG 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EciI GGCGGA 2 cut(s) 78, 793
Ecl136II GAGCTC 2 cut(s) 277, 883
EclXI CGGCCG 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 732, 909
Eco24I GRGCYC 2 cut(s) 279, 885
Eco31I GGTCTC 3 cut(s) 71, 293, 760
Eco47I GGWCC 8 cut(s) 58, 190, 393, 481, 574, 615, 628, 945
Eco52I CGGCCG 1 cut(s) 217
Eco53kI GAGCTC 2 cut(s) 277, 883
Eco57I CTGAAG 1 cut(s) 131
Eco72I CACGTG 1 cut(s) 243
Eco88I CYCGRG 3 cut(s) 270, 278, 317
Eco91I GGTNACC 1 cut(s) 160
EcoICRI GAGCTC 2 cut(s) 277, 883
EcoNI CCTNNNNNAGG 1 cut(s) 940
EcoO109I RGGNCCY 4 cut(s) 393, 615, 643, 945
EcoO65I GGTNACC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 2 cut(s) 732, 909
EcoT38I GRGCYC 2 cut(s) 279, 885
ErhI CCWWGG 2 cut(s) 732, 909
Esp3I CGTCTC 3 cut(s) 99, 730, 795
FaeI CATG 9 cut(s) 23, 382, 574, 583, 628, 700, 736, 895, 913
FalI AAGNNNNNCTT 2 cut(s) 920, 952
FaqI GGGAC 8 cut(s) 350, 379, 560, 614, 628, 763, 931, 1015
FatI CATG 9 cut(s) 19, 378, 570, 579, 624, 696, 732, 891, 909
FauI CCCGC 1 cut(s) 244
FblI GTMKAC 1 cut(s) 182
FokI GGATG 3 cut(s) 290, 913, 1006
FriOI GRGCYC 2 cut(s) 279, 885
FspBI CTAG 1 cut(s) 1110
GlaI GCGC 4 cut(s) 73, 147, 247, 417
GsaI CCCAGC 1 cut(s) 800
HaeII RGCGCY 1 cut(s) 149
HgaI GACGC 2 cut(s) 592, 836
HhaI GCGC 4 cut(s) 74, 148, 248, 418
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 9 cut(s) 23, 382, 574, 583, 628, 700, 736, 895, 913
Hin6I GCGC 4 cut(s) 72, 146, 246, 416
HinP1I GCGC 4 cut(s) 72, 146, 246, 416
HincII GTYRAC 2 cut(s) 183, 388
HindII GTYRAC 2 cut(s) 183, 388
HinfI GANTC 2 cut(s) 83, 968
HphI GGTGA 3 cut(s) 172, 554, 1046
Hpy166II GTNNAC 5 cut(s) 58, 183, 388, 481, 562
Hpy188I TCNGA 5 cut(s) 230, 292, 519, 848, 926
Hpy188III TCNNGA 2 cut(s) 109, 965
Hpy8I GTNNAC 5 cut(s) 58, 183, 388, 481, 562
HpyAV CCTTC 6 cut(s) 106, 181, 196, 628, 730, 936
HpyCH4III ACNGT 3 cut(s) 154, 177, 364
HpyCH4IV ACGT 4 cut(s) 242, 457, 477, 741
HpyCH4V TGCA 2 cut(s) 465, 976
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 4 cut(s) 242, 457, 477, 741
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 9 cut(s) 23, 382, 574, 583, 628, 700, 736, 895, 913
HspAI GCGC 4 cut(s) 72, 146, 246, 416
KflI GGGWCCC 1 cut(s) 393
KroI GCCGGC 2 cut(s) 142, 331
KroNI GCCGGC 2 cut(s) 144, 333
KspI CCGCGG 1 cut(s) 217
Kzo9I GATC 3 cut(s) 225, 255, 1019
LguI GCTCTTC 1 cut(s) 111
LmnI GCTCC 5 cut(s) 274, 517, 754, 880, 888
Lsp1109I GCAGC 3 cut(s) 53, 300, 1093
LweI GCATC 1 cut(s) 1093
MaeI CTAG 1 cut(s) 1110
MaeII ACGT 4 cut(s) 242, 457, 477, 741
MaeIII GTNAC 2 cut(s) 160, 589
MalI GATC 3 cut(s) 227, 257, 1021
MboI GATC 3 cut(s) 225, 255, 1019
MboII GAAGA 4 cut(s) 128, 250, 457, 613
MflI RGATCY 2 cut(s) 225, 255
MhlI GDGCHC 4 cut(s) 279, 285, 324, 885
MluCI AATT 1 cut(s) 887
MlyI GAGTC 1 cut(s) 977
MmeI TCCRAC 2 cut(s) 315, 559
MreI CGCCGGCG 1 cut(s) 142
MroNI GCCGGC 2 cut(s) 142, 331
MspA1I CMGCKG 2 cut(s) 216, 265
Mva1269I GAATGC 1 cut(s) 237
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 7 cut(s) 72, 216, 248, 416, 524, 830, 870
NaeI GCCGGC 2 cut(s) 144, 333
NcoI CCATGG 2 cut(s) 732, 909
NdeII GATC 3 cut(s) 225, 255, 1019
NgoMIV GCCGGC 2 cut(s) 142, 331
NlaIII CATG 9 cut(s) 23, 382, 574, 583, 628, 700, 736, 895, 913
NmeAIII GCCGAG 3 cut(s) 100, 352, 1055
NmuCI GTSAC 1 cut(s) 160
NotI GCGGCCGC 1 cut(s) 217
NspI RCATGY 1 cut(s) 700
PaeR7I CTCGAG 1 cut(s) 317
PciI ACATGT 1 cut(s) 696
PciSI GCTCTTC 1 cut(s) 111
PcsI WCGNNNNNNNCGW 2 cut(s) 324, 381
PctI GAATGC 1 cut(s) 237
PdiI GCCGGC 2 cut(s) 144, 333
PfeI GAWTC 1 cut(s) 83
PflMI CCANNNNNTGG 2 cut(s) 309, 571
PfoI TCCNGGA 1 cut(s) 896
PleI GAGTC 1 cut(s) 976
PmaCI CACGTG 1 cut(s) 243
PmlI CACGTG 1 cut(s) 243
PpsI GAGTC 1 cut(s) 976
Ppu21I YACGTR 2 cut(s) 243, 478
PpuMI RGGWCCY 3 cut(s) 393, 615, 945
PscI ACATGT 1 cut(s) 696
Psp124BI GAGCTC 2 cut(s) 279, 885
Psp5II RGGWCCY 3 cut(s) 393, 615, 945
Psp6I CCWGG 1 cut(s) 507
PspCI CACGTG 1 cut(s) 243
PspEI GGTNACC 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 796
PspGI CCWGG 1 cut(s) 507
PspPPI RGGWCCY 3 cut(s) 393, 615, 945
PspXI VCTCGAGB 1 cut(s) 317
PsuI RGATCY 2 cut(s) 225, 255
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 1 cut(s) 1010
RsaNI GTAC 1 cut(s) 1009
SacI GAGCTC 2 cut(s) 279, 885
SacII CCGCGG 1 cut(s) 217
SalI GTCGAC 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 225, 255, 1019
ScaI AGTACT 1 cut(s) 1010
SchI GAGTC 1 cut(s) 977
SduI GDGCHC 4 cut(s) 279, 285, 324, 885
SfaNI GCATC 1 cut(s) 1093
Sfr274I CTCGAG 1 cut(s) 317
Sfr303I CCGCGG 1 cut(s) 217
SgrAI CRCCGGYG 1 cut(s) 142
SgrBI CCGCGG 1 cut(s) 217
SgrDI CGTCGACG 1 cut(s) 181
SinI GGWCC 8 cut(s) 58, 190, 393, 481, 574, 615, 628, 945
SlaI CTCGAG 1 cut(s) 317
SmaI CCCGGG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 1 cut(s) 887
SspMI CTAG 1 cut(s) 1110
SstI GAGCTC 2 cut(s) 279, 885
StyI CCWWGG 2 cut(s) 732, 909
TaaI ACNGT 3 cut(s) 154, 177, 364
TaiI ACGT 4 cut(s) 245, 460, 480, 744
TaqI TCGA 4 cut(s) 182, 318, 443, 1101
TaqII GACCGA 1 cut(s) 95
TasI AATT 1 cut(s) 887
TatI WGTACW 1 cut(s) 1008
TauI GCSGC 9 cut(s) 47, 50, 216, 219, 222, 251, 347, 677, 680
TfiI GAWTC 1 cut(s) 83
TseFI GTSAC 1 cut(s) 160
TseI GCWGC 3 cut(s) 41, 313, 1106
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 4 cut(s) 36, 613, 880, 917
TspGWI ACGGA 2 cut(s) 373, 893
TspMI CCCGGG 1 cut(s) 270
Van91I CCANNNNNTGG 2 cut(s) 309, 571
VpaK11BI GGWCC 8 cut(s) 58, 190, 393, 481, 574, 615, 628, 945
XagI CCTNNNNNAGG 1 cut(s) 940
XceI RCATGY 1 cut(s) 700
XhoI CTCGAG 1 cut(s) 317
XmaI CCCGGG 1 cut(s) 270
XmiI GTMKAC 1 cut(s) 182
XspI CTAG 1 cut(s) 1110
ZrmI AGTACT 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.