Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013322

Physical Location & Seq

Genomic Coordinates Forward (+)

19243348 .. 19245141

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCTTCTCTTTCAGTCTCTTCCTCTTCAACCATCATCGATTCAAGAGCTCCTCCTTCTCGACTAGCCTCCGCCTCCGCCTCTTCTCCGTCGTGCATTTCACTTCCCACACTTCCGATTCAGTCTCATACCCGTGCCGCTAAAGCCACTGCTTACTGTCGGAAGATTGTGAGGAACGTTGTGACGAGAGCTACTACTGAAGTTGGTGAAGCTCCTGCCACTACTACCGAAGCTGAGACTACTGAGTTACCTGAAATCGTCAAGACTGCTCAAGAAGCTTGGGAGAAAGTGGATGACAAGTACGCTATTGGTTCTCTTGCCTTTGCTGGTGTAGTGGCTCTTTGGGGTTCTGCTGGAATGATTTCGGCAATCGATAGGCTTCCATTGGTTCCTGGTGTTCTTGAACTTGTAGGCATCGGTTACACAGGATGGTTCACTTACAAGAACCTGGTCTTCAAACCAGACAGGGAGGCTTTGTTTGAGAAGGTCAAGAGCACATACAAAGACATATTAGGGAGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009521 GO:0009522 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009737 GO:0009767 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0015979 GO:0016020 GO:0019684 GO:0019904 GO:0022900 GO:0030093 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0055114 GO:0097159 GO:0097305 GO:0098796 GO:0098807 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

174

Amino Acids

18.48

Weight (kDa)

7.73

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	89 - 172	5.2e-30	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46820 AT2G46820
fragaria_vesca	FvH4_7g17800
malus_domestica	MD01G1089400.v1.1 MD07G1160900.v1.1
prunus_persica	Prupe.2G198900_v2.0.a1 Prupe.2G198900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0361201
rosa_laevigata	RLG00000027739
rosa_multiflora	Rmu_sc0010379.1_g000010 Rmu_sc0011132.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295270
rosa_rugosa	Rorug01G0287500
rosa_samantha	Rh1AG298400 Rh1BG262300 Rh1CG279700 Rh1DG292500
rosa_wichuraiana	Rw1G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	72, 78, 138
AclI	AACGTT	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	1 cut(s)	302
AgsI	TTSAA	4 cut(s)	30, 45, 404, 457
AjnI	CCWGG	2 cut(s)	391, 447
AluBI	AGCT	6 cut(s)	50, 191, 212, 233, 278, 522
AluI	AGCT	6 cut(s)	50, 191, 212, 233, 278, 522
Alw21I	GWGCWC	2 cut(s)	52, 497
Alw26I	GTCTC	3 cut(s)	22, 129, 230
ApeKI	GCWGC	1 cut(s)	519
Asp700I	GAANNNNTTC	1 cut(s)	361
AsuHPI	GGTGA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	2 cut(s)	52, 497
BccI	CCATC	2 cut(s)	41, 423
BciT130I	CCWGG	2 cut(s)	393, 449
BcoDI	GTCTC	3 cut(s)	22, 129, 230
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	2 cut(s)	138, 520
BlsI	GCNGC	2 cut(s)	139, 521
Bme1390I	CCNGG	2 cut(s)	393, 449
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	2 cut(s)	393, 449
BmsI	GCATC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	255
Bsa29I	ATCGAT	2 cut(s)	39, 372
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
BseBI	CCWGG	2 cut(s)	393, 449
BseCI	ATCGAT	2 cut(s)	39, 372
BseGI	GGATG	2 cut(s)	298, 434
BseMII	CTCAG	2 cut(s)	225, 234
BseRI	GAGGAG	1 cut(s)	42
BshVI	ATCGAT	2 cut(s)	39, 372
BsiHKAI	GWGCWC	2 cut(s)	52, 497
BsmAI	GTCTC	3 cut(s)	22, 129, 230
Bsp1286I	GDGCHC	2 cut(s)	52, 497
BspACI	CCGC	3 cut(s)	72, 78, 138
BspCNI	CTCAG	2 cut(s)	226, 235
BspDI	ATCGAT	2 cut(s)	39, 372
BspLI	GGNNCC	1 cut(s)	390
Bst2UI	CCWGG	2 cut(s)	393, 449
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	3 cut(s)	25, 31, 88
BstDEI	CTNAG	2 cut(s)	234, 243
BstF5I	GGATG	2 cut(s)	298, 434
BstMAI	GTCTC	3 cut(s)	22, 129, 230
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 275
BstNI	CCWGG	2 cut(s)	393, 449
BstSCI	CCNGG	2 cut(s)	391, 447
BstV2I	GAAGAC	1 cut(s)	445
Bsu15I	ATCGAT	2 cut(s)	39, 372
BsuTUI	ATCGAT	2 cut(s)	39, 372
BtsCI	GGATG	2 cut(s)	298, 434
BtsI	GCAGTG	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	147
ClaI	ATCGAT	2 cut(s)	39, 372
CsiI	ACCWGGT	1 cut(s)	447
Csp6I	GTAC	1 cut(s)	301
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	2 cut(s)	234, 243
Eam1104I	CTCTTC	3 cut(s)	25, 31, 88
EarI	CTCTTC	3 cut(s)	25, 31, 88
EciI	GGCGGA	2 cut(s)	61, 67
Ecl136II	GAGCTC	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	391, 447
EcoT38I	GRGCYC	1 cut(s)	52
FaiI	YATR	3 cut(s)	129, 499, 509
Fnu4HI	GCNGC	2 cut(s)	138, 520
FokI	GGATG	2 cut(s)	305, 441
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	2 cut(s)	138, 520
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	2 cut(s)	138, 520
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	2 cut(s)	41, 118
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	2 cut(s)	117, 162
Hpy188III	TCNNGA	6 cut(s)	45, 60, 262, 272, 401, 490
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	66, 478
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 275
HpyF3I	CTNAG	2 cut(s)	234, 243
HpySE526I	ACGT	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	55, 217, 516
LweI	GCATC	1 cut(s)	423
MabI	ACCWGGT	1 cut(s)	447
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	3 cut(s)	181, 246, 419
MboII	GAAGA	5 cut(s)	12, 18, 75, 175, 445
MhlI	GDGCHC	2 cut(s)	52, 497
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	34, 63, 79, 85, 91, 165, 463
MroXI	GAANNNNTTC	1 cut(s)	361
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	393, 449
MvaI	CCWGG	2 cut(s)	393, 449
MwoI	GCNNNNNNNGC	2 cut(s)	143, 275
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	361
PfeI	GAWTC	2 cut(s)	41, 118
PkrI	GCNGC	2 cut(s)	139, 521
Psp124BI	GAGCTC	1 cut(s)	52
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	391, 447
PspGI	CCWGG	2 cut(s)	391, 447
PspN4I	GGNNCC	1 cut(s)	390
PvuII	CAGCTG	1 cut(s)	522
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	52
SatI	GCNGC	2 cut(s)	138, 520
ScrFI	CCNGG	2 cut(s)	393, 449
SduI	GDGCHC	2 cut(s)	52, 497
SexAI	ACCWGGT	1 cut(s)	447
SfaNI	GCATC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
SsiI	CCGC	3 cut(s)	72, 78, 138
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	2 cut(s)	391, 447
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	39, 61, 372
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	41, 118
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	519
Tsp45I	GTSAC	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.