Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0013322

Physical Location & Seq

Genomic Coordinates Forward (+)

53012509 .. 53014548

Gene Structure 2040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG298400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTTGTACATAAATATTGGTCGTTTTTCGCTTTTAGGCCGTAAGATTGCTCGCAATGTCATGGCCATGGCCACTGGGGAAGCACCAGCAGAAGTTGCAACAACCGAGCTGCCAGAGGTTTTGAAGACAATTCAAGAATCTTGGGACAAAGTTGAAGACAAGTATGCAGTGTCCTCACTTGCAGTAGCTGGTGTTGTTGCAGTATGGGGCTCTACCGGGATGATTTTGGCAATTGATAGGCTTCCTTTGATTCCTGGTGCTCTCGAGCTTGTTGGCATTGGCTACACTGGGTGGTTTGCATACAAGAACCTGGTGTACAAACCAGACAGGGAAGCTTTGATACAGAAGATAAAAGATACATACAAAGACATAATTGGCAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009521 GO:0009522 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009737 GO:0009767 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0015979 GO:0016020 GO:0019684 GO:0019904 GO:0022900 GO:0030093 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0055114 GO:0097159 GO:0097305 GO:0098796 GO:0098807 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

128

Amino Acids

13.98

Weight (kDa)

6.27

Isoelectric Point (pI)

21.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	42 - 126	1.1e-29	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46820 AT2G46820
fragaria_vesca	FvH4_7g17800
malus_domestica	MD01G1089400.v1.1 MD07G1160900.v1.1
prunus_persica	Prupe.2G198900_v2.0.a1 Prupe.2G198900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0361201
rosa_laevigata	RLG00000027739
rosa_multiflora	Rmu_sc0010379.1_g000010 Rmu_sc0011132.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295270
rosa_rugosa	Rorug01G0287500
rosa_samantha	Rh1AG298400 Rh1BG262300 Rh1CG279700 Rh1DG292500
rosa_wichuraiana	Rw1G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	63, 69
AdeI	CACNNNGTG	1 cut(s)	291
AfaI	GTAC	2 cut(s)	8, 317
AgsI	TTSAA	3 cut(s)	124, 134, 155
AjnI	CCWGG	2 cut(s)	253, 309
AluBI	AGCT	5 cut(s)	109, 188, 268, 335, 384
AluI	AGCT	5 cut(s)	109, 188, 268, 335, 384
Alw21I	GWGCWC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	3 cut(s)	37, 63, 69
ApeKI	GCWGC	3 cut(s)	109, 378, 381
AsuC2I	CCSGG	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	263
BalI	TGGCCA	2 cut(s)	65, 71
BanII	GRGCYC	1 cut(s)	212
BarI	GAAGNNNNNNTAC	2 cut(s)	324, 356
BbsI	GAAGAC	2 cut(s)	131, 162
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	96
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	255, 311
BcnI	CCSGG	1 cut(s)	217
BfaI	CTAG	1 cut(s)	385
BisI	GCNGC	3 cut(s)	110, 379, 382
BlsI	GCNGC	3 cut(s)	111, 380, 383
Bme1390I	CCNGG	3 cut(s)	217, 255, 311
BmeT110I	CYCGRG	1 cut(s)	263
BmrFI	CCNGG	3 cut(s)	217, 255, 311
BmrI	ACTGGG	2 cut(s)	84, 297
BmuI	ACTGGG	2 cut(s)	84, 297
BpiI	GAAGAC	2 cut(s)	131, 162
BpuMI	CCSGG	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	66
Bse1I	ACTGG	2 cut(s)	79, 292
Bse3DI	GCAATG	1 cut(s)	61
BseBI	CCWGG	2 cut(s)	255, 311
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	225
BseMI	GCAATG	1 cut(s)	61
BseNI	ACTGG	2 cut(s)	79, 292
BseXI	GCAGC	1 cut(s)	96
BshFI	GGCC	3 cut(s)	39, 65, 71
BsiHKAI	GWGCWC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	3 cut(s)	39, 65, 71
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	2 cut(s)	212, 262
Bsp1407I	TGTACA	2 cut(s)	6, 315
Bsp19I	CCATGG	1 cut(s)	66
BspANI	GGCC	3 cut(s)	39, 65, 71
BsrDI	GCAATG	1 cut(s)	61
BsrGI	TGTACA	2 cut(s)	6, 315
BsrI	ACTGG	2 cut(s)	79, 292
BssECI	CCNNGG	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	255, 311
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstAUI	TGTACA	2 cut(s)	6, 315
BstC8I	GCNNGC	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	2 cut(s)	255, 311
BstSCI	CCNGG	3 cut(s)	215, 253, 309
BstV1I	GCAGC	1 cut(s)	96
BstV2I	GAAGAC	2 cut(s)	131, 162
BsuRI	GGCC	3 cut(s)	39, 65, 71
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	225
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	3 cut(s)	72, 174, 285
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	188
CsiI	ACCWGGT	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	7, 316
CviAII	CATG	2 cut(s)	61, 67
CviQI	GTAC	2 cut(s)	7, 316
DraIII	CACNNNGTG	1 cut(s)	291
EaeI	YGGCCR	2 cut(s)	63, 69
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	212
Eco88I	CYCGRG	1 cut(s)	263
EcoRII	CCWGG	2 cut(s)	253, 309
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	2 cut(s)	64, 70
FaiI	YATR	8 cut(s)	11, 62, 68, 165, 205, 301, 361, 371
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	2 cut(s)	60, 66
Fnu4HI	GCNGC	3 cut(s)	110, 379, 382
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	110, 379, 382
FspBI	CTAG	1 cut(s)	385
GluI	GCNGC	3 cut(s)	110, 379, 382
HaeIII	GGCC	3 cut(s)	39, 65, 71
HapII	CCGG	1 cut(s)	216
Hin1II	CATG	2 cut(s)	64, 70
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	2 cut(s)	137, 250
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188III	TCNNGA	2 cut(s)	134, 263
Hpy8I	GTNNAC	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	98, 167, 182, 200, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	64, 70
Lsp1109I	GCAGC	1 cut(s)	96
MabI	ACCWGGT	1 cut(s)	309
MaeI	CTAG	1 cut(s)	385
MboII	GAAGA	3 cut(s)	136, 167, 358
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	212, 262
MlsI	TGGCCA	2 cut(s)	65, 71
MluCI	AATT	3 cut(s)	129, 231, 372
MluNI	TGGCCA	2 cut(s)	65, 71
MnlI	CCTC	2 cut(s)	109, 184
Mox20I	TGGCCA	2 cut(s)	65, 71
MscI	TGGCCA	2 cut(s)	65, 71
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	2 cut(s)	65, 71
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	3 cut(s)	217, 255, 311
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	2 cut(s)	255, 311
MwoI	GCNNNNNNNGC	1 cut(s)	95
NciI	CCSGG	1 cut(s)	217
NcoI	CCATGG	1 cut(s)	66
NlaIII	CATG	2 cut(s)	64, 70
PaeR7I	CTCGAG	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	137, 250
PkrI	GCNGC	3 cut(s)	111, 380, 383
Psp6I	CCWGG	2 cut(s)	253, 309
PspGI	CCWGG	2 cut(s)	253, 309
PsrI	GAACNNNNNNTAC	2 cut(s)	299, 331
PstNI	CAGNNNCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	8, 317
RsaNI	GTAC	2 cut(s)	7, 316
RseI	CAYNNNNRTG	1 cut(s)	65
SatI	GCNGC	3 cut(s)	110, 379, 382
ScrFI	CCNGG	3 cut(s)	217, 255, 311
SduI	GDGCHC	2 cut(s)	212, 262
SetI	ASST	7 cut(s)	111, 120, 190, 270, 312, 337, 386
SexAI	ACCWGGT	1 cut(s)	309
Sfr274I	CTCGAG	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	129, 231, 372
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	385
StyD4I	CCNGG	3 cut(s)	215, 253, 309
StyI	CCWWGG	1 cut(s)	66
TaqI	TCGA	1 cut(s)	264
TasI	AATT	3 cut(s)	129, 231, 372
TatI	WGTACW	2 cut(s)	6, 315
TfiI	GAWTC	2 cut(s)	137, 250
TscAI	CASTG	3 cut(s)	79, 174, 292
TseI	GCWGC	3 cut(s)	109, 378, 381
TspRI	CASTG	3 cut(s)	79, 174, 292
XhoI	CTCGAG	1 cut(s)	263
XspI	CTAG	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.