Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0013322

Physical Location & Seq

Genomic Coordinates Reverse (-)

23559748 .. 23561716

Gene Structure 1969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1160900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCTTCCACCTCCTCCACACTTTCCATCTCCTCCTCGTCCACTCTAGTTGACACCAAGGCTCCTCGCCATTCGGCTGCCTCATCACCACAATGTGTGACCCTGCCTTCCCTTCCTCCACCGCCAGTTCATTCTCAAAATCACGCAGGGAAGACCACTGCCTACTGTCGTAAGTTTGCGCGCAATGTCATGGCCATGGCGACAGGGGAAGCACCAGCAGAAGTTGCAGTAACTGAGCTGCCAGAGATTGTGAAGACCGTTCAAGAAGCTTGGGAGAAAGTGGAAGATAAATATGCAGTTTCTTCACTTGCAGTAGCTGGTGCTGTTGCACTATGGGGCTCCACTGGACTGATTTCGGCAATTGATAGGCTTCCTTTAGTTCCTGGTGTTCTTGAGCTTGTAGGAATTGGCTACACTGGGTGGTTTGCATACAAGAACCTTGTTTACAAACCAGACAGAGAGGCTTTGACACTGAAGATTAAAGCTACATACAAAGATATAATCGGCAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009521 GO:0009522 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009737 GO:0009767 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0015979 GO:0016020 GO:0019684 GO:0019904 GO:0022900 GO:0030093 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0055114 GO:0097159 GO:0097305 GO:0098796 GO:0098807 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

172

Amino Acids

18.07

Weight (kDa)

8.52

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	85 - 169	5.9e-29	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0013322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46820 AT2G46820
fragaria_vesca	FvH4_7g17800
malus_domestica	MD01G1089400.v1.1 MD07G1160900.v1.1
prunus_persica	Prupe.2G198900_v2.0.a1 Prupe.2G198900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0361201
rosa_laevigata	RLG00000027739
rosa_multiflora	Rmu_sc0010379.1_g000010 Rmu_sc0011132.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295270
rosa_rugosa	Rorug01G0287500
rosa_samantha	Rh1AG298400 Rh1BG262300 Rh1CG279700 Rh1DG292500
rosa_wichuraiana	Rw1G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	181
AciI	CCGC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	494
AdeI	CACNNNGTG	2 cut(s)	95, 420
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	6 cut(s)	238, 269, 317, 397, 485, 513
AluI	AGCT	6 cut(s)	238, 269, 317, 397, 485, 513
AlwNI	CAGNNNCTG	2 cut(s)	233, 317
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	4 cut(s)	77, 238, 507, 510
AspLEI	GCGC	2 cut(s)	181, 183
AsuHPI	GGTGA	1 cut(s)	78
BalI	TGGCCA	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	341
BbsI	GAAGAC	2 cut(s)	158, 260
BbvI	GCAGC	2 cut(s)	64, 225
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	384
BfaI	CTAG	2 cut(s)	47, 514
BisI	GCNGC	4 cut(s)	78, 239, 508, 511
BlsI	GCNGC	4 cut(s)	79, 240, 509, 512
Bme1390I	CCNGG	1 cut(s)	384
BmiI	GGNNCC	2 cut(s)	63, 340
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	426
BpiI	GAAGAC	2 cut(s)	158, 260
BpuEI	CTTGAG	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	57, 195
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bse1I	ACTGG	3 cut(s)	125, 349, 421
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	57, 195
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	3 cut(s)	125, 349, 421
BsePI	GCGCGC	1 cut(s)	179
BseRI	GAGGAG	4 cut(s)	4, 22, 25, 54
BseXI	GCAGC	2 cut(s)	64, 225
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	63, 340
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	125, 349, 421
BssECI	CCNNGG	2 cut(s)	57, 195
BssHII	GCGCGC	1 cut(s)	179
BssT1I	CCWWGG	2 cut(s)	57, 195
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	167, 259
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	181
BstHHI	GCGC	2 cut(s)	181, 183
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstUI	CGCG	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	64, 225
BstV2I	GAAGAC	2 cut(s)	158, 260
BsuRI	GGCC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	195
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	4 cut(s)	156, 342, 414, 470
Cac8I	GCNNGC	1 cut(s)	181
CaiI	CAGNNNCTG	2 cut(s)	233, 317
CfoI	GCGC	2 cut(s)	181, 183
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	2 cut(s)	190, 196
DdeI	CTNAG	1 cut(s)	234
DraIII	CACNNNGTG	2 cut(s)	95, 420
EaeI	YGGCCR	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	57, 195
Eco24I	GRGCYC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	57, 195
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	2 cut(s)	57, 195
FaeI	CATG	2 cut(s)	193, 199
FaiI	YATR	7 cut(s)	191, 197, 294, 334, 430, 490, 500
FatI	CATG	2 cut(s)	189, 195
Fnu4HI	GCNGC	4 cut(s)	78, 239, 508, 511
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	4 cut(s)	78, 239, 508, 511
FspBI	CTAG	2 cut(s)	47, 514
GlaI	GCGC	2 cut(s)	180, 182
GluI	GCNGC	4 cut(s)	78, 239, 508, 511
HaeIII	GGCC	1 cut(s)	194
HhaI	GCGC	2 cut(s)	181, 183
Hin1II	CATG	2 cut(s)	193, 199
Hin6I	GCGC	2 cut(s)	179, 181
HinP1I	GCGC	2 cut(s)	179, 181
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	267
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	3 cut(s)	42, 52, 445
Hpy188III	TCNNGA	2 cut(s)	263, 392
Hpy8I	GTNNAC	3 cut(s)	42, 52, 445
HpyAV	CCTTC	2 cut(s)	117, 122
HpyCH4III	ACNGT	2 cut(s)	167, 259
HpyCH4V	TGCA	5 cut(s)	227, 296, 311, 329, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	2 cut(s)	193, 199
HspAI	GCGC	2 cut(s)	179, 181
LmnI	GCTCC	2 cut(s)	67, 344
Lsp1109I	GCAGC	2 cut(s)	64, 225
MaeI	CTAG	2 cut(s)	47, 514
MaeIII	GTNAC	2 cut(s)	97, 229
MboII	GAAGA	5 cut(s)	163, 265, 294, 296, 487
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	2 cut(s)	360, 405
MluNI	TGGCCA	1 cut(s)	194
MnlI	CCTC	8 cut(s)	22, 25, 43, 46, 75, 91, 126, 454
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	2 cut(s)	91, 194
Msp20I	TGGCCA	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	384
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	224
NcoI	CCATGG	1 cut(s)	195
NlaIII	CATG	2 cut(s)	193, 199
NlaIV	GGNNCC	2 cut(s)	63, 340
NmuCI	GTSAC	1 cut(s)	97
PauI	GCGCGC	1 cut(s)	179
PkrI	GCNGC	4 cut(s)	79, 240, 509, 512
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	63, 340
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PstNI	CAGNNNCTG	2 cut(s)	233, 317
PteI	GCGCGC	1 cut(s)	179
RseI	CAYNNNNRTG	2 cut(s)	91, 194
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	4 cut(s)	78, 239, 508, 511
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	341
SetI	ASST	8 cut(s)	14, 240, 271, 319, 399, 441, 487, 515
SmiMI	CAYNNNNRTG	2 cut(s)	91, 194
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	2 cut(s)	360, 405
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	47, 514
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	2 cut(s)	57, 195
TaaI	ACNGT	2 cut(s)	167, 259
TasI	AATT	2 cut(s)	360, 405
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	4 cut(s)	163, 349, 421, 477
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	4 cut(s)	77, 238, 507, 510
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	119
TspRI	CASTG	4 cut(s)	163, 349, 421, 477
XspI	CTAG	2 cut(s)	47, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.