Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0013322

Physical Location & Seq

Genomic Coordinates Reverse (-)

14628057 .. 14629300

Gene Structure 1244 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGCTTCCACCTCCTCCACACTTACCATCTCCTCCTCTTCTACCCCTTTTGACATCAAGACTCCTCGCCACTCCGCACACTCACCGCAATGTGTGACACTACCTACGCTTCCTCCACCGCCGGTGCAGTCTCAAAACCGCCCAGGGAAGACCACTGCCTATTGCCGTAAGATTGCTCGCAATGTCATGGCCATGGCCACTGGGGAAGCACCAGCAGAAGTTGCAACAACCGAGCTGCCAGAGGTTTTGAAGACAGTTCAAGAAGCTTGGGACAAAGTTGAAGACAAGTATGCAGTGTCTTCACTTGCAGTAGCTGGTGTTGTTGCAGTATGGGGCTCTACCGGGATGATTTCGGCAATTGATAGGCTTCCTTTGATTCCTGGTGCTCTCGAGCTTGTTGGCATTGGCTACACTGGGTGGTTTGCATACAAGAACCTGGTGTACAAACCAGACAGGGAAGCTTTGATACAGAAGATAAAAGACACATACAAAGACATAATTGGCAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009521 GO:0009522 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009737 GO:0009767 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0015979 GO:0016020 GO:0019684 GO:0019904 GO:0022900 GO:0030093 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0055114 GO:0097159 GO:0097305 GO:0098796 GO:0098807 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

171

Amino Acids

18.23

Weight (kDa)

8.52

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	84 - 168	2.5e-30	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46820 AT2G46820
fragaria_vesca	FvH4_7g17800
malus_domestica	MD01G1089400.v1.1 MD07G1160900.v1.1
prunus_persica	Prupe.2G198900_v2.0.a1 Prupe.2G198900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0361201
rosa_laevigata	RLG00000027739
rosa_multiflora	Rmu_sc0010379.1_g000010 Rmu_sc0011132.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295270
rosa_rugosa	Rorug01G0287500
rosa_samantha	Rh1AG298400 Rh1BG262300 Rh1CG279700 Rh1DG292500
rosa_wichuraiana	Rw1G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	75, 86, 119, 139
AcoI	YGGCCR	2 cut(s)	189, 195
AdeI	CACNNNGTG	1 cut(s)	417
AfaI	GTAC	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	250, 260, 281
AjnI	CCWGG	3 cut(s)	142, 379, 435
AluBI	AGCT	6 cut(s)	235, 266, 314, 394, 461, 510
AluI	AGCT	6 cut(s)	235, 266, 314, 394, 461, 510
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	135
AlwNI	CAGNNNCTG	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	2 cut(s)	189, 195
ApeKI	GCWGC	3 cut(s)	235, 504, 507
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	389
BalI	TGGCCA	2 cut(s)	191, 197
BanII	GRGCYC	1 cut(s)	338
BarI	GAAGNNNNNNTAC	2 cut(s)	450, 482
BbsI	GAAGAC	4 cut(s)	155, 257, 288, 291
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	150
BciT130I	CCWGG	3 cut(s)	144, 381, 437
BcnI	CCSGG	1 cut(s)	343
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	511
BisI	GCNGC	3 cut(s)	236, 505, 508
BlsI	GCNGC	3 cut(s)	237, 506, 509
Bme1390I	CCNGG	4 cut(s)	144, 343, 381, 437
BmeT110I	CYCGRG	1 cut(s)	389
BmrFI	CCNGG	4 cut(s)	144, 343, 381, 437
BmrI	ACTGGG	2 cut(s)	210, 423
BmuI	ACTGGG	2 cut(s)	210, 423
BpiI	GAAGAC	4 cut(s)	155, 257, 288, 291
BpuMI	CCSGG	1 cut(s)	343
BsaJI	CCNNGG	3 cut(s)	142, 143, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	205, 418
Bse3DI	GCAATG	2 cut(s)	95, 187
BseBI	CCWGG	3 cut(s)	144, 381, 437
BseDI	CCNNGG	3 cut(s)	142, 143, 192
BseGI	GGATG	1 cut(s)	351
BseMI	GCAATG	2 cut(s)	95, 187
BseNI	ACTGG	2 cut(s)	205, 418
BseRI	GAGGAG	4 cut(s)	4, 22, 25, 54
BseXI	GCAGC	1 cut(s)	222
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	2 cut(s)	191, 197
BsiHKAI	GWGCWC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	122, 342
BslFI	GGGAC	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	191, 197
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	338, 388
Bsp1407I	TGTACA	1 cut(s)	441
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	4 cut(s)	75, 86, 119, 139
BspANI	GGCC	2 cut(s)	191, 197
BsrDI	GCAATG	2 cut(s)	95, 187
BsrFI	RCCGGY	1 cut(s)	121
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	205, 418
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	142, 143, 192
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	3 cut(s)	144, 381, 437
Bst4CI	ACNGT	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	1 cut(s)	178
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	3 cut(s)	144, 381, 437
BstSCI	CCNGG	4 cut(s)	142, 341, 379, 435
BstV1I	GCAGC	1 cut(s)	222
BstV2I	GAAGAC	4 cut(s)	155, 257, 288, 291
BsuRI	GGCC	2 cut(s)	191, 197
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	351
BtsI	GCAGTG	2 cut(s)	153, 300
BtsIMutI	CAGTG	4 cut(s)	153, 198, 300, 411
Cac8I	GCNNGC	1 cut(s)	178
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	121
CsiI	ACCWGGT	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	2 cut(s)	187, 193
CviQI	GTAC	1 cut(s)	442
DraIII	CACNNNGTG	1 cut(s)	417
EaeI	YGGCCR	2 cut(s)	189, 195
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	389
EcoRII	CCWGG	3 cut(s)	142, 379, 435
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	2 cut(s)	190, 196
FaiI	YATR	7 cut(s)	188, 194, 291, 331, 427, 487, 497
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	186, 192
Fnu4HI	GCNGC	3 cut(s)	236, 505, 508
FokI	GGATG	1 cut(s)	358
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	236, 505, 508
FspBI	CTAG	1 cut(s)	511
GluI	GCNGC	3 cut(s)	236, 505, 508
HaeIII	GGCC	2 cut(s)	191, 197
HapII	CCGG	2 cut(s)	122, 342
Hin1II	CATG	2 cut(s)	190, 196
HindIII	AAGCTT	2 cut(s)	264, 459
HinfI	GANTC	2 cut(s)	61, 376
HpaII	CCGG	2 cut(s)	122, 342
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188III	TCNNGA	3 cut(s)	58, 260, 389
Hpy8I	GTNNAC	1 cut(s)	442
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4V	TGCA	6 cut(s)	127, 224, 293, 308, 326, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	190, 196
Lsp1109I	GCAGC	1 cut(s)	222
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	1 cut(s)	511
MaeIII	GTNAC	1 cut(s)	94
MboII	GAAGA	6 cut(s)	30, 160, 262, 291, 293, 484
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	338, 388
MlsI	TGGCCA	2 cut(s)	191, 197
MluCI	AATT	2 cut(s)	357, 498
MluNI	TGGCCA	2 cut(s)	191, 197
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	22, 25, 43, 46, 75, 123, 235
Mox20I	TGGCCA	2 cut(s)	191, 197
MscI	TGGCCA	2 cut(s)	191, 197
MslI	CAYNNNNRTG	2 cut(s)	88, 191
Msp20I	TGGCCA	2 cut(s)	191, 197
MspI	CCGG	2 cut(s)	122, 342
MspR9I	CCNGG	4 cut(s)	144, 343, 381, 437
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	3 cut(s)	144, 381, 437
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	343
NcoI	CCATGG	1 cut(s)	192
NlaIII	CATG	2 cut(s)	190, 196
NmuCI	GTSAC	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	389
PasI	CCCWGGG	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	3 cut(s)	237, 506, 509
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	142, 379, 435
PspGI	CCWGG	3 cut(s)	142, 379, 435
PsrI	GAACNNNNNNTAC	2 cut(s)	425, 457
PstNI	CAGNNNCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	2 cut(s)	88, 191
SatI	GCNGC	3 cut(s)	236, 505, 508
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	4 cut(s)	144, 343, 381, 437
SduI	GDGCHC	2 cut(s)	338, 388
SexAI	ACCWGGT	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	389
SgrAI	CRCCGGYG	1 cut(s)	121
SlaI	CTCGAG	1 cut(s)	389
SmiMI	CAYNNNNRTG	2 cut(s)	88, 191
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	2 cut(s)	357, 498
SsiI	CCGC	4 cut(s)	75, 86, 119, 139
SspMI	CTAG	1 cut(s)	511
StyD4I	CCNGG	4 cut(s)	142, 341, 379, 435
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	390
TasI	AATT	2 cut(s)	357, 498
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	1 cut(s)	376
TscAI	CASTG	4 cut(s)	160, 205, 300, 418
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	3 cut(s)	235, 504, 507
Tsp45I	GTSAC	1 cut(s)	94
TspRI	CASTG	4 cut(s)	160, 205, 300, 418
XhoI	CTCGAG	1 cut(s)	389
XspI	CTAG	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.