Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013322

Physical Location & Seq

Genomic Coordinates Forward (+)

20256873 .. 20258823

Gene Structure 1951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1089400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCCTCAACCTCCTCCACACTTTCCATCTCCTCCTCATCCACTCTAGTTGACGCCAAGGCTCCTCGCCATTCGGCTGCCTCATCACCACAATGTGTGACCCTCCCTACGCTTCCTCCACCGCCTGTTCAGTCTCAAAACCGTGCAGGGAAGACCACTGCCTATTGTCGTAAGATTGCGCGCAATGTCATGGCAATGGCGACAGGGGAAGCACCAGCAGAAGTGGCAACAGCTGAGCCCCCAGAGATTGTGAAGACAGTTCAAGAAGCTTGGGAGAAAGTGGAAGATAAATATGCAGTGTCTTCACTTGCAGTAGCTGTTGCTGTTGCAGTATGGGGCTTCAGTGGAATGATCTCGGCAATTGATAGGCTTCCTTTAGTCCCTGGTGTTCTTGAGCTTGTAGGAATTGGTTACACTGGGTGGTTTGCATACAAGAACCTTGTTTTCAAACCAGACAGAGAAGCCTTGACACAGAAGATTAAGGGCACATACAAAGATATAATCGGCAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009521 GO:0009522 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009737 GO:0009767 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0015979 GO:0016020 GO:0019684 GO:0019904 GO:0022900 GO:0030093 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0055114 GO:0097159 GO:0097305 GO:0098796 GO:0098807 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

172

Amino Acids

18.07

Weight (kDa)

8.89

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	85 - 169	1.7e-30	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46820 AT2G46820
fragaria_vesca	FvH4_7g17800
malus_domestica	MD01G1089400.v1.1 MD07G1160900.v1.1
prunus_persica	Prupe.2G198900_v2.0.a1 Prupe.2G198900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0361201
rosa_laevigata	RLG00000027739
rosa_multiflora	Rmu_sc0010379.1_g000010 Rmu_sc0011132.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295270
rosa_rugosa	Rorug01G0287500
rosa_samantha	Rh1AG298400 Rh1BG262300 Rh1CG279700 Rh1DG292500
rosa_wichuraiana	Rw1G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	181
AciI	CCGC	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	54
AdeI	CACNNNGTG	2 cut(s)	95, 420
AgsI	TTSAA	2 cut(s)	263, 448
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	5 cut(s)	233, 269, 317, 397, 513
AluI	AGCT	5 cut(s)	233, 269, 317, 397, 513
Alw26I	GTCTC	1 cut(s)	138
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	77, 507, 510
AspLEI	GCGC	2 cut(s)	181, 183
AsuHPI	GGTGA	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	240
BbsI	GAAGAC	3 cut(s)	158, 260, 294
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	2 cut(s)	47, 514
BisI	GCNGC	3 cut(s)	78, 508, 511
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	3 cut(s)	79, 509, 512
Bme1390I	CCNGG	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	426
BpiI	GAAGAC	3 cut(s)	158, 260, 294
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	57, 382
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	2 cut(s)	190, 201
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	57, 382
BseGI	GGATG	1 cut(s)	38
BseMI	GCAATG	2 cut(s)	190, 201
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	421
BsePI	GCGCGC	1 cut(s)	179
BseRI	GAGGAG	4 cut(s)	4, 22, 25, 54
BseSI	GKGCMC	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	240, 488
Bsp143I	GATC	1 cut(s)	351
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	63
BsrDI	GCAATG	2 cut(s)	190, 201
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	57, 382
BssHII	GCGCGC	1 cut(s)	179
BssMI	GATC	1 cut(s)	351
BssNI	GRCGYC	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	143, 259
BstACI	GRCGYC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	181
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	181
BstHHI	GCGC	2 cut(s)	181, 183
BstKTI	GATC	1 cut(s)	354
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	351
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	382
BstSLI	GKGCMC	1 cut(s)	488
BstUI	CGCG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	3 cut(s)	158, 260, 294
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	38
BtsI	GCAGTG	2 cut(s)	156, 303
BtsIMutI	CAGTG	4 cut(s)	156, 303, 349, 414
Cac8I	GCNNGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	2 cut(s)	181, 183
CseI	GACGC	1 cut(s)	62
CspCI	CAANNNNNGTGG	2 cut(s)	31, 66
CviAII	CATG	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
DraIII	CACNNNGTG	2 cut(s)	95, 420
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	1 cut(s)	193
FaiI	YATR	6 cut(s)	191, 294, 334, 430, 490, 500
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	78, 508, 511
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	3 cut(s)	78, 508, 511
FspBI	CTAG	2 cut(s)	47, 514
GlaI	GCGC	2 cut(s)	180, 182
GluI	GCNGC	3 cut(s)	78, 508, 511
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	2 cut(s)	181, 183
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	193
Hin6I	GCGC	2 cut(s)	179, 181
HinP1I	GCGC	2 cut(s)	179, 181
HincII	GTYRAC	1 cut(s)	52
HindII	GTYRAC	1 cut(s)	52
HindIII	AAGCTT	1 cut(s)	267
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	263, 392
Hpy8I	GTNNAC	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	143, 259
HpyCH4V	TGCA	5 cut(s)	146, 296, 311, 329, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	193
HspAI	GCGC	2 cut(s)	179, 181
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	9 cut(s)	132, 138, 189, 228, 255, 369, 396, 402, 465
Lsp1109I	GCAGC	1 cut(s)	64
MaeI	CTAG	2 cut(s)	47, 514
MaeIII	GTNAC	2 cut(s)	97, 410
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	5 cut(s)	163, 265, 294, 296, 487
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	2 cut(s)	240, 488
MluCI	AATT	2 cut(s)	360, 405
MnlI	CCTC	9 cut(s)	16, 22, 25, 43, 46, 75, 91, 113, 126
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	2 cut(s)	91, 194
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	384
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	63
NmeAIII	GCCGAG	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	97
PauI	GCGCGC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	79, 509, 512
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	317
PteI	GCGCGC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	233
RseI	CAYNNNNRTG	2 cut(s)	91, 194
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	3 cut(s)	78, 508, 511
Sau3AI	GATC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	2 cut(s)	240, 488
SetI	ASST	7 cut(s)	14, 235, 271, 319, 399, 441, 515
SmiMI	CAYNNNNRTG	2 cut(s)	91, 194
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	2 cut(s)	360, 405
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	47, 514
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	143, 259
TasI	AATT	2 cut(s)	360, 405
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	4 cut(s)	163, 303, 349, 421
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	3 cut(s)	77, 507, 510
Tsp45I	GTSAC	1 cut(s)	97
TspRI	CASTG	4 cut(s)	163, 303, 349, 421
XspI	CTAG	2 cut(s)	47, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.