Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0013322

Physical Location & Seq

Genomic Coordinates Forward (+)

55058540 .. 55060790

Gene Structure 2251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG279700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTTATGTTGTGATAACATATTAAATGTTCAGTTGACCGTCTGGCATACCTCAATGTTGTACATAAATATTGGTTGTTTTTCGCTTTTAGGCCGTAAGATTGCTCGCAATGTCATGGCCATGGCCACTGGGGAAGCACCAGCAGAAGTTGCAACAACCGAGCTGCCAGAGGTTTTGAAGACAATTCAAGAATCTTGGGACAAAGTTGAAGACAAGTATGCAGTGTCTTCACTTGCAGTAGCTGGTGTTGTTGCAGTATGGGGCTCTACCGGGATGATTTTGGCAATTGATAGGCTTCCTTTGATTCCTGGTGCTCTCGAGCTTGTTGGCATTGGCTACACTGGGTGGTTTGCATACAAGAACCTGGTGTACAAACCAGACAGGGAAGCTTTGATACAGAAGATAAAAGATACATACAAAGACATAATTGGCAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009521 GO:0009522 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009737 GO:0009767 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0015979 GO:0016020 GO:0019684 GO:0019904 GO:0022900 GO:0030093 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0055114 GO:0097159 GO:0097305 GO:0098796 GO:0098807 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

146

Amino Acids

16.0

Weight (kDa)

5.36

Isoelectric Point (pI)

26.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	60 - 144	1.6e-29	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46820 AT2G46820
fragaria_vesca	FvH4_7g17800
malus_domestica	MD01G1089400.v1.1 MD07G1160900.v1.1
prunus_persica	Prupe.2G198900_v2.0.a1 Prupe.2G198900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0361201
rosa_laevigata	RLG00000027739
rosa_multiflora	Rmu_sc0010379.1_g000010 Rmu_sc0011132.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295270
rosa_rugosa	Rorug01G0287500
rosa_samantha	Rh1AG298400 Rh1BG262300 Rh1CG279700 Rh1DG292500
rosa_wichuraiana	Rw1G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	117, 123
AdeI	CACNNNGTG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	62, 371
AgsI	TTSAA	3 cut(s)	178, 188, 209
AjnI	CCWGG	2 cut(s)	307, 363
AluBI	AGCT	5 cut(s)	163, 242, 322, 389, 438
AluI	AGCT	5 cut(s)	163, 242, 322, 389, 438
Alw21I	GWGCWC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	242
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	91, 117, 123
ApeKI	GCWGC	3 cut(s)	163, 432, 435
AsuC2I	CCSGG	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	317
BalI	TGGCCA	2 cut(s)	119, 125
BanII	GRGCYC	1 cut(s)	266
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbsI	GAAGAC	3 cut(s)	185, 216, 219
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	150
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	2 cut(s)	309, 365
BcnI	CCSGG	1 cut(s)	271
BfaI	CTAG	1 cut(s)	439
BisI	GCNGC	3 cut(s)	164, 433, 436
BlsI	GCNGC	3 cut(s)	165, 434, 437
Bme1390I	CCNGG	3 cut(s)	271, 309, 365
BmeT110I	CYCGRG	1 cut(s)	317
BmrFI	CCNGG	3 cut(s)	271, 309, 365
BmrI	ACTGGG	2 cut(s)	138, 351
BmuI	ACTGGG	2 cut(s)	138, 351
BpiI	GAAGAC	3 cut(s)	185, 216, 219
BpuMI	CCSGG	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	133, 346
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	309, 365
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	279
BseMI	GCAATG	1 cut(s)	115
BseNI	ACTGG	2 cut(s)	133, 346
BseXI	GCAGC	1 cut(s)	150
BshFI	GGCC	3 cut(s)	93, 119, 125
BsiHKAI	GWGCWC	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	93, 119, 125
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	266, 316
Bsp1407I	TGTACA	2 cut(s)	60, 369
Bsp19I	CCATGG	1 cut(s)	120
BspANI	GGCC	3 cut(s)	93, 119, 125
BsrDI	GCAATG	1 cut(s)	115
BsrGI	TGTACA	2 cut(s)	60, 369
BsrI	ACTGG	2 cut(s)	133, 346
BssECI	CCNNGG	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	309, 365
Bst4CI	ACNGT	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstAUI	TGTACA	2 cut(s)	60, 369
BstC8I	GCNNGC	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	2 cut(s)	309, 365
BstSCI	CCNGG	3 cut(s)	269, 307, 363
BstV1I	GCAGC	1 cut(s)	150
BstV2I	GAAGAC	3 cut(s)	185, 216, 219
BsuRI	GGCC	3 cut(s)	93, 119, 125
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	3 cut(s)	126, 228, 339
Cac8I	GCNNGC	1 cut(s)	106
CaiI	CAGNNNCTG	1 cut(s)	242
CsiI	ACCWGGT	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	61, 370
CviAII	CATG	2 cut(s)	115, 121
CviQI	GTAC	2 cut(s)	61, 370
DraIII	CACNNNGTG	1 cut(s)	345
EaeI	YGGCCR	2 cut(s)	117, 123
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	317
EcoRII	CCWGG	2 cut(s)	307, 363
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	118, 124
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	2 cut(s)	114, 120
Fnu4HI	GCNGC	3 cut(s)	164, 433, 436
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	164, 433, 436
FspBI	CTAG	1 cut(s)	439
GluI	GCNGC	3 cut(s)	164, 433, 436
HaeIII	GGCC	3 cut(s)	93, 119, 125
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	2 cut(s)	118, 124
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	2 cut(s)	191, 304
HpaII	CCGG	1 cut(s)	270
Hpy166II	GTNNAC	2 cut(s)	36, 370
Hpy188III	TCNNGA	2 cut(s)	188, 317
Hpy8I	GTNNAC	2 cut(s)	36, 370
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	5 cut(s)	152, 221, 236, 254, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	118, 124
Lsp1109I	GCAGC	1 cut(s)	150
MabI	ACCWGGT	1 cut(s)	363
MaeI	CTAG	1 cut(s)	439
MboII	GAAGA	4 cut(s)	190, 219, 221, 412
MfeI	CAATTG	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	266, 316
MlsI	TGGCCA	2 cut(s)	119, 125
MluCI	AATT	3 cut(s)	183, 285, 426
MluNI	TGGCCA	2 cut(s)	119, 125
MnlI	CCTC	2 cut(s)	61, 163
Mox20I	TGGCCA	2 cut(s)	119, 125
MscI	TGGCCA	2 cut(s)	119, 125
MseI	TTAA	1 cut(s)	23
MslI	CAYNNNNRTG	1 cut(s)	119
Msp20I	TGGCCA	2 cut(s)	119, 125
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	3 cut(s)	271, 309, 365
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	309, 365
MwoI	GCNNNNNNNGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	271
NcoI	CCATGG	1 cut(s)	120
NlaIII	CATG	2 cut(s)	118, 124
PaeR7I	CTCGAG	1 cut(s)	317
PfeI	GAWTC	2 cut(s)	191, 304
PkrI	GCNGC	3 cut(s)	165, 434, 437
Psp6I	CCWGG	2 cut(s)	307, 363
PspGI	CCWGG	2 cut(s)	307, 363
PsrI	GAACNNNNNNTAC	2 cut(s)	353, 385
PstNI	CAGNNNCTG	1 cut(s)	242
RsaI	GTAC	2 cut(s)	62, 371
RsaNI	GTAC	2 cut(s)	61, 370
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	3 cut(s)	164, 433, 436
ScrFI	CCNGG	3 cut(s)	271, 309, 365
SduI	GDGCHC	2 cut(s)	266, 316
SetI	ASST	8 cut(s)	53, 165, 174, 244, 324, 366, 391, 440
SexAI	ACCWGGT	1 cut(s)	363
Sfr274I	CTCGAG	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	3 cut(s)	183, 285, 426
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	439
StyD4I	CCNGG	3 cut(s)	269, 307, 363
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	1 cut(s)	318
TasI	AATT	3 cut(s)	183, 285, 426
TatI	WGTACW	2 cut(s)	60, 369
TfiI	GAWTC	2 cut(s)	191, 304
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	3 cut(s)	133, 228, 346
TseI	GCWGC	3 cut(s)	163, 432, 435
TspRI	CASTG	3 cut(s)	133, 228, 346
XhoI	CTCGAG	1 cut(s)	317
XspI	CTAG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.