Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0013322

Physical Location & Seq

Genomic Coordinates Reverse (-)

15287793 .. 15289586

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCCTCCACCTCCTCCACACTTACCATCTCCTCCTCTTCTACCCCTTTTGACACCAAGACTCCTCGCCACTCTGTCGCACCCTCACCGCAATGTGTGACACTCCCTACGCTTCCTCCACCGCCGGTGCAGTCTCAAAACCGCCCAGGGAAGACCACTGCCTATTGCCGTAAGATTGCTCGCAATGTCATGGCCATGGCCACTGGGGAAGCACCAGCAGAAGTTGCAACAACCGAGCTGCCAGAGGTTTTGAAGACAGTTCAAGAAGCTTGGGACAAAGTTGAAGACAAGTATGCAGTGTCTTCACTTGCAGTAGCTGGTGTTGTTGCAGTATGGGGCTCTACCGGGATGATTTTGGCAATTGATAGGCTTCCTTTGATTCCTGGTGCTCTCGAGCTTGTTGGCATTGGCTACACTGGGTGGTTTGCATACAAGAACCTGGTGTACAAACCAGACAGGGAAGCTTTGATACAGAAGATAAAAGACACATACAGAGACATAATTGGCAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009508 GO:0009521 GO:0009522 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009737 GO:0009767 GO:0009773 GO:0009941 GO:0009987 GO:0010033 GO:0015979 GO:0016020 GO:0019684 GO:0019904 GO:0022900 GO:0030093 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033993 GO:0034357 GO:0042221 GO:0042646 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0055114 GO:0097159 GO:0097305 GO:0098796 GO:0098807 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAAD

Protein Analysis

171

Amino Acids

18.34

Weight (kDa)

8.53

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAAD	PF14159	85 - 169	3.4e-29	CAAD domains of cyanobacterial aminoacyl-tRNA synthetase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46820 AT2G46820
fragaria_vesca	FvH4_7g17800
malus_domestica	MD01G1089400.v1.1 MD07G1160900.v1.1
prunus_persica	Prupe.2G198900_v2.0.a1 Prupe.2G198900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0361201
rosa_laevigata	RLG00000027739
rosa_multiflora	Rmu_sc0010379.1_g000010 Rmu_sc0011132.1_g000003
rosa_roxburghii	Rroxscaffold_4G00295270
rosa_rugosa	Rorug01G0287500
rosa_samantha	Rh1AG298400 Rh1BG262300 Rh1CG279700 Rh1DG292500
rosa_wichuraiana	Rw1G026400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	89, 122, 142
AcoI	YGGCCR	2 cut(s)	192, 198
AdeI	CACNNNGTG	1 cut(s)	420
AfaI	GTAC	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	253, 263, 284
AjnI	CCWGG	3 cut(s)	145, 382, 438
AluBI	AGCT	6 cut(s)	238, 269, 317, 397, 464, 513
AluI	AGCT	6 cut(s)	238, 269, 317, 397, 464, 513
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	138, 489
AlwNI	CAGNNNCTG	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	3 cut(s)	3, 192, 198
ApeKI	GCWGC	3 cut(s)	238, 507, 510
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	392
BalI	TGGCCA	2 cut(s)	194, 200
BanII	GRGCYC	1 cut(s)	341
BarI	GAAGNNNNNNTAC	2 cut(s)	453, 485
BbsI	GAAGAC	4 cut(s)	158, 260, 291, 294
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	3 cut(s)	147, 384, 440
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	138, 489
BfaI	CTAG	1 cut(s)	514
BisI	GCNGC	3 cut(s)	239, 508, 511
BlsI	GCNGC	3 cut(s)	240, 509, 512
Bme1390I	CCNGG	4 cut(s)	147, 346, 384, 440
BmeT110I	CYCGRG	1 cut(s)	392
BmrFI	CCNGG	4 cut(s)	147, 346, 384, 440
BmrI	ACTGGG	2 cut(s)	213, 426
BmuI	ACTGGG	2 cut(s)	213, 426
BpiI	GAAGAC	4 cut(s)	158, 260, 291, 294
BpuMI	CCSGG	1 cut(s)	346
BsaJI	CCNNGG	3 cut(s)	145, 146, 195
BsaXI	ACNNNNNCTCC	4 cut(s)	46, 76, 100, 130
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	208, 421
Bse3DI	GCAATG	2 cut(s)	98, 190
BseBI	CCWGG	3 cut(s)	147, 384, 440
BseDI	CCNNGG	3 cut(s)	145, 146, 195
BseGI	GGATG	1 cut(s)	354
BseMI	GCAATG	2 cut(s)	98, 190
BseNI	ACTGG	2 cut(s)	208, 421
BseRI	GAGGAG	4 cut(s)	4, 22, 25, 54
BseXI	GCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	149
BshFI	GGCC	3 cut(s)	5, 194, 200
BsiHKAI	GWGCWC	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	125, 345
BslFI	GGGAC	1 cut(s)	287
BsmAI	GTCTC	2 cut(s)	138, 489
BsmFI	GGGAC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	5, 194, 200
BsoBI	CYCGRG	1 cut(s)	392
Bsp1286I	GDGCHC	2 cut(s)	341, 391
Bsp1407I	TGTACA	1 cut(s)	444
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	3 cut(s)	89, 122, 142
BspANI	GGCC	3 cut(s)	5, 194, 200
BsrDI	GCAATG	2 cut(s)	98, 190
BsrFI	RCCGGY	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	208, 421
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	145, 146, 195
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	3 cut(s)	147, 384, 440
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstAUI	TGTACA	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	181
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	354
BstMAI	GTCTC	2 cut(s)	138, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	3 cut(s)	147, 384, 440
BstSCI	CCNGG	4 cut(s)	145, 344, 382, 438
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	4 cut(s)	158, 260, 291, 294
BsuRI	GGCC	3 cut(s)	5, 194, 200
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	354
BtsI	GCAGTG	2 cut(s)	156, 303
BtsIMutI	CAGTG	4 cut(s)	156, 201, 303, 414
Cac8I	GCNNGC	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	124
CsiI	ACCWGGT	1 cut(s)	438
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	2 cut(s)	190, 196
CviQI	GTAC	1 cut(s)	445
DraIII	CACNNNGTG	1 cut(s)	420
EaeI	YGGCCR	2 cut(s)	192, 198
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	145, 382, 438
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	193, 199
FaiI	YATR	7 cut(s)	191, 197, 294, 334, 430, 490, 500
FaqI	GGGAC	1 cut(s)	287
FatI	CATG	2 cut(s)	189, 195
Fnu4HI	GCNGC	3 cut(s)	239, 508, 511
FokI	GGATG	1 cut(s)	361
FriOI	GRGCYC	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	239, 508, 511
FspBI	CTAG	1 cut(s)	514
GluI	GCNGC	3 cut(s)	239, 508, 511
HaeIII	GGCC	3 cut(s)	5, 194, 200
HapII	CCGG	2 cut(s)	125, 345
Hin1II	CATG	2 cut(s)	193, 199
HindIII	AAGCTT	2 cut(s)	267, 462
HinfI	GANTC	2 cut(s)	61, 379
HpaII	CCGG	2 cut(s)	125, 345
HphI	GGTGA	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188III	TCNNGA	2 cut(s)	263, 392
Hpy8I	GTNNAC	1 cut(s)	445
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4V	TGCA	6 cut(s)	130, 227, 296, 311, 329, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	193, 199
Lsp1109I	GCAGC	1 cut(s)	225
MabI	ACCWGGT	1 cut(s)	438
MaeI	CTAG	1 cut(s)	514
MaeIII	GTNAC	1 cut(s)	97
MboII	GAAGA	6 cut(s)	30, 163, 265, 294, 296, 487
MfeI	CAATTG	1 cut(s)	360
MhlI	GDGCHC	2 cut(s)	341, 391
MlsI	TGGCCA	2 cut(s)	194, 200
MluCI	AATT	2 cut(s)	360, 501
MluNI	TGGCCA	2 cut(s)	194, 200
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	9 cut(s)	16, 22, 25, 43, 46, 75, 94, 126, 238
Mox20I	TGGCCA	2 cut(s)	194, 200
MscI	TGGCCA	2 cut(s)	194, 200
MslI	CAYNNNNRTG	2 cut(s)	91, 194
Msp20I	TGGCCA	2 cut(s)	194, 200
MspI	CCGG	2 cut(s)	125, 345
MspR9I	CCNGG	4 cut(s)	147, 346, 384, 440
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	3 cut(s)	147, 384, 440
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	195
NlaIII	CATG	2 cut(s)	193, 199
NmuCI	GTSAC	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	392
PasI	CCCWGGG	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	240, 509, 512
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	145, 382, 438
PspGI	CCWGG	3 cut(s)	145, 382, 438
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PstNI	CAGNNNCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	2 cut(s)	91, 194
SatI	GCNGC	3 cut(s)	239, 508, 511
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	4 cut(s)	147, 346, 384, 440
SduI	GDGCHC	2 cut(s)	341, 391
SetI	ASST	9 cut(s)	14, 240, 249, 271, 319, 399, 441, 466, 515
SexAI	ACCWGGT	1 cut(s)	438
Sfr274I	CTCGAG	1 cut(s)	392
SgrAI	CRCCGGYG	1 cut(s)	124
SlaI	CTCGAG	1 cut(s)	392
SmiMI	CAYNNNNRTG	2 cut(s)	91, 194
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	2 cut(s)	360, 501
SsiI	CCGC	3 cut(s)	89, 122, 142
SspMI	CTAG	1 cut(s)	514
StyD4I	CCNGG	4 cut(s)	145, 344, 382, 438
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	1 cut(s)	393
TasI	AATT	2 cut(s)	360, 501
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	1 cut(s)	379
TscAI	CASTG	4 cut(s)	163, 208, 303, 421
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	3 cut(s)	238, 507, 510
Tsp45I	GTSAC	1 cut(s)	97
TspRI	CASTG	4 cut(s)	163, 208, 303, 421
XhoI	CTCGAG	1 cut(s)	392
XspI	CTAG	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.