Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012359

Physical Location & Seq

Genomic Coordinates Forward (+)

19260906 .. 19262533

Gene Structure 1628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGATGACAGATTTATCTCTCACGAGAGATGAAGATGAAGAAGAAGCAAAGCCCTTAGCAGAAGAAGAAGGAGCGCGTGAAGTAGCAGACAGAGAGCACATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGACTTGTGATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGATTCATCTTCAAACGAGAAAGGTTTGCTTTTAAACTTCGAAGATCTCACTGGCAAATCTTGGAGGTTCCGTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGATTCGTTAAAGACAAAAAGCTTGACGCCGGAGATATTGTCTCTTTCCAAAGATGTGTCGGAGATTCAGGAAGAGATAGCCGTTTGTTTATTGATTGGAGGAGAAGACCTAAAGTCCCTGACCATCCTCATTTCGCCGCCGGAGCTATGTTCCCTAGGTTTTACAGCTTTCCTTCGACCAATTACAGTCTTTATAATCATCAGCAGCAACGTCATCATCACAGTGGTGGTGGTTATAATTATCATCAAATTCCGAGAGAATTTGGTTATGGTTACTTCGTTAGGTCAGTGGATCAGAGGAACAATCCTGCGGCTGCGGTGGCTGATCCGTTGGTGATTGAATCTGTGCCGGTGATGATGCACGGGAGAGCTAATCAGGAACTTGTTGGAACGGCCGGGAAGAGACTGAGGCTTTTTGGAGTTGATATGGAATGCGGCGAGAGCGGAATGACCAACAGTACGGAGGAGGAATCATCATCTTCCGGTGGAAGTTTGCCACGTGGAGGCGGTGGTGGTGCTTCATCTTCCTCTTTCTTTCAGCTGAGACTTGGAAGCAGCAGTGAAGATGATCACTTCACTAAGAAAGGAAAGTCTTCATTGTCTTTTGATTTGGATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

310

Amino Acids

34.89

Weight (kDa)

6.27

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	35 - 139	2e-26	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46870
fragaria_vesca	FvH4_5g10410
malus_domestica	MD06G1124400.v1.1 MD14G1141400.v1.1
prunus_persica	Prupe.5G134900_v2.0.a1
pyrus_communis	pycom06g11470 pycom14g11620
rosa_chinensis	RchiOBHm_Chr7g0187821
rosa_laevigata	RLG00000004754
rosa_multiflora	Rmu_co8399923.1_g000001 Rmu_sc0004483.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267040
rosa_rugosa	Rorug06G0484500 Rorug06G0484600
rosa_samantha	Rh7AG089800 Rh7BG091400 Rh7CG090500 Rh7DG092200
rosa_wichuraiana	Rw7G007740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	507, 549
AccBSI	CCGCTC	1 cut(s)	756
AccII	CGCG	1 cut(s)	76
AciI	CCGC	6 cut(s)	450, 623, 629, 747, 756, 819
AclWI	GGATC	3 cut(s)	148, 612, 632
AcoI	YGGCCR	1 cut(s)	705
AcsI	RAATTY	2 cut(s)	561, 572
AcvI	CACGTG	1 cut(s)	812
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	772
AfiI	CCNNNNNNNGG	1 cut(s)	815
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	201, 653
AhdI	GACNNNNNGTC	1 cut(s)	425
AleI	CACNNNNGTG	1 cut(s)	537
AluBI	AGCT	6 cut(s)	288, 334, 458, 480, 683, 853
AluI	AGCT	6 cut(s)	288, 334, 458, 480, 683, 853
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	3 cut(s)	358, 709, 850
AlwI	GGATC	3 cut(s)	148, 612, 632
AoxI	GGCC	1 cut(s)	705
ApeKI	GCWGC	3 cut(s)	517, 626, 867
ApoI	RAATTY	2 cut(s)	561, 572
Asp700I	GAANNNNTTC	1 cut(s)	904
AspA2I	CCTAGG	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	709
AsuHPI	GGTGA	2 cut(s)	658, 676
AsuII	TTCGAA	1 cut(s)	228
AvrII	CCTAGG	1 cut(s)	467
BauI	CACGAG	1 cut(s)	22
BbrPI	CACGTG	1 cut(s)	812
BbsI	GAAGAC	2 cut(s)	424, 897
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	3 cut(s)	529, 613, 879
BccI	CCATC	1 cut(s)	444
BceAI	ACGGC	2 cut(s)	378, 720
BclI	TGATCA	1 cut(s)	880
BcnI	CCSGG	1 cut(s)	709
BcoDI	GTCTC	3 cut(s)	358, 709, 850
BfaI	CTAG	1 cut(s)	468
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	6 cut(s)	450, 518, 624, 627, 748, 868
BlnI	CCTAGG	1 cut(s)	467
BlsI	GCNGC	6 cut(s)	451, 519, 625, 628, 749, 869
Bme1390I	CCNGG	1 cut(s)	709
BmeRI	GACNNNNNGTC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	709
BmsI	GCATC	1 cut(s)	660
BpiI	GAAGAC	2 cut(s)	424, 897
Bpu10I	CCTNAGC	1 cut(s)	55
Bpu14I	TTCGAA	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	709
BsaAI	YACGTR	1 cut(s)	812
BsaBI	GATNNNNATC	1 cut(s)	924
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	467
BsaWI	WCCGGW	1 cut(s)	794
BsaXI	ACNNNNNCTCC	4 cut(s)	244, 274, 336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	815
Bse118I	RCCGGY	1 cut(s)	661
Bse1I	ACTGG	2 cut(s)	244, 275
Bse8I	GATNNNNATC	1 cut(s)	924
BseDI	CCNNGG	1 cut(s)	467
BseGI	GGATG	1 cut(s)	436
BseJI	GATNNNNATC	1 cut(s)	924
BseLI	CCNNNNNNNGG	1 cut(s)	815
BseMII	CTCAG	2 cut(s)	710, 845
BseNI	ACTGG	2 cut(s)	244, 275
BseRI	GAGGAG	2 cut(s)	427, 791
BseX3I	CGGCCG	1 cut(s)	705
BseXI	GCAGC	3 cut(s)	529, 613, 879
Bsh1236I	CGCG	1 cut(s)	76
Bsh1285I	CGRYCG	1 cut(s)	708
BshFI	GGCC	1 cut(s)	707
BsiEI	CGRYCG	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	5 cut(s)	342, 453, 662, 708, 795
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	815
BsmAI	GTCTC	3 cut(s)	358, 709, 850
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	1 cut(s)	707
Bsp119I	TTCGAA	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	6 cut(s)	153, 232, 604, 637, 880, 925
BspACI	CCGC	6 cut(s)	450, 623, 629, 747, 756, 819
BspANI	GGCC	1 cut(s)	707
BspCNI	CTCAG	2 cut(s)	711, 846
BspFNI	CGCG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	148, 612, 632
BspT104I	TTCGAA	1 cut(s)	228
BsrBI	CCGCTC	1 cut(s)	756
BsrFI	RCCGGY	1 cut(s)	661
BsrI	ACTGG	2 cut(s)	244, 275
BssAI	RCCGGY	1 cut(s)	661
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	6 cut(s)	153, 232, 604, 637, 880, 925
BssNI	GRCGYC	1 cut(s)	339
BssSI	CACGAG	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	22
Bst4CI	ACNGT	4 cut(s)	278, 500, 536, 770
Bst6I	CTCTTC	2 cut(s)	379, 707
BstACI	GRCGYC	1 cut(s)	339
BstBAI	YACGTR	1 cut(s)	812
BstBI	TTCGAA	1 cut(s)	228
BstDEI	CTNAG	4 cut(s)	55, 719, 854, 891
BstF5I	GGATG	1 cut(s)	436
BstFNI	CGCG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	6 cut(s)	156, 235, 607, 640, 883, 928
BstMAI	GTCTC	3 cut(s)	358, 709, 850
BstMBI	GATC	6 cut(s)	153, 232, 604, 637, 880, 925
BstMCI	CGRYCG	1 cut(s)	708
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 632, 753
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	707
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	3 cut(s)	529, 613, 879
BstV2I	GAAGAC	2 cut(s)	424, 897
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BstZI	CGGCCG	1 cut(s)	705
BsuRI	GGCC	1 cut(s)	707
BtsCI	GGATG	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	877
BtsIMutI	CAGTG	4 cut(s)	237, 541, 606, 877
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	661
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	771
CviAII	CATG	2 cut(s)	100, 295
CviQI	GTAC	1 cut(s)	771
DdeI	CTNAG	4 cut(s)	55, 719, 854, 891
DpnI	GATC	6 cut(s)	155, 234, 606, 639, 882, 927
DpnII	GATC	6 cut(s)	153, 232, 604, 637, 880, 925
DraI	TTTAAA	1 cut(s)	222
DriI	GACNNNNNGTC	1 cut(s)	425
EaeI	YGGCCR	1 cut(s)	705
EagI	CGGCCG	1 cut(s)	705
Eam1104I	CTCTTC	2 cut(s)	379, 707
Eam1105I	GACNNNNNGTC	1 cut(s)	425
EarI	CTCTTC	2 cut(s)	379, 707
EclXI	CGGCCG	1 cut(s)	705
Eco130I	CCWWGG	1 cut(s)	467
Eco52I	CGGCCG	1 cut(s)	705
Eco72I	CACGTG	1 cut(s)	812
EcoT14I	CCWWGG	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	2 cut(s)	103, 298
FaiI	YATR	8 cut(s)	101, 291, 296, 461, 507, 549, 582, 740
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	2 cut(s)	99, 294
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	6 cut(s)	450, 518, 624, 627, 748, 868
FokI	GGATG	1 cut(s)	423
Fsp4HI	GCNGC	6 cut(s)	450, 518, 624, 627, 748, 868
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	6 cut(s)	450, 518, 624, 627, 748, 868
HaeIII	GGCC	1 cut(s)	707
HapII	CCGG	5 cut(s)	342, 453, 662, 708, 795
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	103, 298
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	332
HinfI	GANTC	7 cut(s)	118, 177, 191, 315, 377, 653, 782
HpaII	CCGG	5 cut(s)	342, 453, 662, 708, 795
HphI	GGTGA	2 cut(s)	658, 676
Hpy188I	TCNGA	4 cut(s)	134, 374, 567, 609
Hpy188III	TCNNGA	4 cut(s)	22, 295, 381, 689
HpyAV	CCTTC	2 cut(s)	62, 495
HpyCH4III	ACNGT	4 cut(s)	278, 500, 536, 770
HpyCH4IV	ACGT	2 cut(s)	523, 811
HpyCH4V	TGCA	1 cut(s)	673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 632, 753
HpyF3I	CTNAG	4 cut(s)	55, 719, 854, 891
HpySE526I	ACGT	2 cut(s)	523, 811
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	2 cut(s)	103, 298
HspAI	GCGC	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	6 cut(s)	153, 232, 604, 637, 880, 925
LmnI	GCTCC	3 cut(s)	71, 309, 455
Lsp1109I	GCAGC	3 cut(s)	529, 613, 879
LweI	GCATC	1 cut(s)	660
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	2 cut(s)	523, 811
MaeIII	GTNAC	3 cut(s)	115, 260, 584
MalI	GATC	6 cut(s)	155, 234, 606, 639, 882, 927
MbiI	CCGCTC	1 cut(s)	756
MboI	GATC	6 cut(s)	153, 232, 604, 637, 880, 925
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	4 cut(s)	493, 550, 561, 572
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	4 cut(s)	112, 287, 352, 679
MnlI	CCTC	9 cut(s)	246, 405, 450, 603, 714, 769, 772, 809, 850
MroXI	GAANNNNTTC	1 cut(s)	904
MseI	TTAA	2 cut(s)	221, 321
MslI	CAYNNNNRTG	2 cut(s)	534, 537
MspA1I	CMGCKG	1 cut(s)	853
MspI	CCGG	5 cut(s)	342, 453, 662, 708, 795
MspR9I	CCNGG	1 cut(s)	709
Mva1269I	GAATGC	1 cut(s)	749
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	455, 632, 753
NciI	CCSGG	1 cut(s)	709
NdeII	GATC	6 cut(s)	153, 232, 604, 637, 880, 925
NlaIII	CATG	2 cut(s)	103, 298
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	103
NspV	TTCGAA	1 cut(s)	228
OliI	CACNNNNGTG	1 cut(s)	537
PagI	TCATGA	1 cut(s)	294
PciI	ACATGT	1 cut(s)	99
PctI	GAATGC	1 cut(s)	749
PdmI	GAANNNNTTC	1 cut(s)	904
PfeI	GAWTC	6 cut(s)	177, 191, 315, 377, 653, 782
PkrI	GCNGC	6 cut(s)	451, 519, 625, 628, 749, 869
PleI	GAGTC	1 cut(s)	112
PmaCI	CACGTG	1 cut(s)	812
PmlI	CACGTG	1 cut(s)	812
PpsI	GAGTC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	812
PscI	ACATGT	1 cut(s)	99
PsiI	TTATAA	2 cut(s)	507, 549
PspCI	CACGTG	1 cut(s)	812
PspN4I	GGNNCC	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	853
RsaI	GTAC	1 cut(s)	772
RsaNI	GTAC	1 cut(s)	771
RseI	CAYNNNNRTG	2 cut(s)	534, 537
SaqAI	TTAA	2 cut(s)	221, 321
SatI	GCNGC	6 cut(s)	450, 518, 624, 627, 748, 868
Sau3AI	GATC	6 cut(s)	153, 232, 604, 637, 880, 925
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	709
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	660
SfuI	TTCGAA	1 cut(s)	228
SmiMI	CAYNNNNRTG	2 cut(s)	534, 537
Sse9I	AATT	4 cut(s)	493, 550, 561, 572
SsiI	CCGC	6 cut(s)	450, 623, 629, 747, 756, 819
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	707
StyI	CCWWGG	1 cut(s)	467
TaaI	ACNGT	4 cut(s)	278, 500, 536, 770
TaiI	ACGT	2 cut(s)	526, 814
TaqI	TCGA	3 cut(s)	105, 228, 488
TasI	AATT	4 cut(s)	493, 550, 561, 572
TauI	GCSGC	3 cut(s)	452, 626, 750
TfiI	GAWTC	6 cut(s)	177, 191, 315, 377, 653, 782
Tru1I	TTAA	2 cut(s)	221, 321
Tru9I	TTAA	2 cut(s)	221, 321
TscAI	CASTG	4 cut(s)	244, 541, 606, 877
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	3 cut(s)	517, 626, 867
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	5 cut(s)	45, 51, 183, 822, 897
TspGWI	ACGGA	3 cut(s)	248, 630, 788
TspRI	CASTG	4 cut(s)	244, 541, 606, 877
XapI	RAATTY	2 cut(s)	561, 572
XceI	RCATGY	1 cut(s)	103
XmaJI	CCTAGG	1 cut(s)	467
XmnI	GAANNNNTTC	1 cut(s)	904
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.