Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012359

Physical Location & Seq

Genomic Coordinates Forward (+)

6746523 .. 6748644

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG091400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGAATTTCGGCGCATCTAGAGATGGAGGAGGAGGTTTTTCCGAGGATGAAGTCAGAGGTAAGCTTCCCTTTTCGTCTTACTCTCCCACCTCTCCCTCTTCTTCTTCTTCTTCACCTCACTTCAACAACACCAGTACGGCAACAGCCACTCTTCTCCCGGGTGGTCTCAGCAGCTGGGATACTTACTGCGGCGGTGGAGGTCCAGACACGAGGCTGGAGCTCATGGACTCGTCGCCGCTAAACGCTGATAATAATCAAGAGTCGAACAATGAGCCTCATACAACAACAACAACAGTAGCGGCCATAGAGAAAGAGCACATGTTCGACAAAGTGGTGACGCCGAGCGATGTGGGGAAGCTGAACCGGCTGGTGATTCCGAAGCAGCACGCCGAGAAGTACTTCCCGCTGGACTCGTCCACCAACGAGAAGGGGCTGCTCCTTAATTTCGAGGACCGGACCGGGAAGGCGTGGCGGTTCAGGTACTCGTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAAGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTCGACGCCGGGGACATCGTGTCGTTTCAGCGCGGACTCGGTGAGTCTGGGAAGGACCGGCTCTACATTGACTGGAGGCGCCGCCCCGAAGCGGCCGATCCCAACCACCACCACCACGCGCTTCATCACCAGCATCACAATTTTGGAATTCCACCCCCGCATCATTACTCGTTCCACCGCTCGGTGCCGTGGAGTCCACTTCTAATGCGGCCACCTGGATCTTCGCCAACAATTGCACGCGAGCACCATTTACAGCAGATGAATTACAGCACGAACATTCATCCCTATCGGAACAGCAGCGCTGGCGGTGGCGGAGGTTATGGGTACGGAAACGTGGTGAACATGAATCCGGTCTGTTCGGGGCCGGTTTATTATCTGAGATCGGGTGGAGGAGGAGGATCAGTAATCCCACAGCAATTACATCAACAAGAGGGCACTGCTACTACTCATGCTCATCATCATCATCATCATCATCATCAAGTGGGTCTGGGTCAGCTGGGTCGGGTTAATGTGGTCGAGCCCATGGTTCTGGAGTCGGTGCCTGTGGTCCATGGCAAGGTAGCAGCAGCAGGCAAGAGGCTGAGGCTGTTTGGAGTAAACATGGACTGCCCCGTATCCGATCAGTCGGACGAATGTGACATTTTGTCGTCATCAACTACTACTGCAATGGTTCTTTCCCAACAGCCTCATCAACCCCCACTTCAATTAAGGCTCTACGACGGCACGCCGGCCACCACCACCGACTTCTTCAACCGAGGCAAGACGTCTTCATCGTCCTCCATGTCCTTGGATTTCGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

451

Amino Acids

49.55

Weight (kDa)

7.02

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	108 - 212	2.4e-26	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46870
fragaria_vesca	FvH4_5g10410
malus_domestica	MD06G1124400.v1.1 MD14G1141400.v1.1
prunus_persica	Prupe.5G134900_v2.0.a1
pyrus_communis	pycom06g11470 pycom14g11620
rosa_chinensis	RchiOBHm_Chr7g0187821
rosa_laevigata	RLG00000004754
rosa_multiflora	Rmu_co8399923.1_g000001 Rmu_sc0004483.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267040
rosa_rugosa	Rorug06G0484500 Rorug06G0484600
rosa_samantha	Rh7AG089800 Rh7BG091400 Rh7CG090500 Rh7DG092200
rosa_wichuraiana	Rw7G007740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1319
AccB1I	GGYRCC	3 cut(s)	630, 736, 1090
AccB7I	CCANNNNNTGG	1 cut(s)	525
AccBSI	CCGCTC	1 cut(s)	732
AccII	CGCG	3 cut(s)	585, 671, 792
AclWI	GGATC	3 cut(s)	644, 778, 958
AcoI	YGGCCR	4 cut(s)	300, 645, 761, 1281
AcsI	RAATTY	2 cut(s)	4, 699
AcyI	GRCGYC	4 cut(s)	338, 558, 631, 1316
AfaI	GTAC	5 cut(s)	136, 398, 482, 488, 878
AfeI	AGCGCT	1 cut(s)	853
AfiI	CCNNNNNNNGG	4 cut(s)	525, 643, 733, 1108
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	3 cut(s)	124, 1256, 1303
AhdI	GACNNNNNGTC	2 cut(s)	571, 1195
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	7 cut(s)	64, 174, 220, 358, 507, 553, 1048
AluI	AGCT	7 cut(s)	64, 174, 220, 358, 507, 553, 1048
Alw21I	GWGCWC	3 cut(s)	222, 318, 798
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	644, 778, 958
AlwNI	CAGNNNCTG	1 cut(s)	174
Ama87I	CYCGRG	1 cut(s)	157
Aor51HI	AGCGCT	1 cut(s)	853
AoxI	GGCC	5 cut(s)	300, 645, 761, 914, 1281
ApeKI	GCWGC	7 cut(s)	171, 382, 433, 498, 849, 1115, 1118
ApoI	RAATTY	2 cut(s)	4, 699
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	5 cut(s)	14, 585, 633, 673, 854
AspS9I	GGNCC	6 cut(s)	200, 451, 456, 607, 914, 1099
AsuC2I	CCSGG	4 cut(s)	158, 159, 460, 562
AsuHPI	GGTGA	6 cut(s)	105, 346, 382, 605, 671, 901
AvaI	CYCGRG	1 cut(s)	157
AvaII	GGWCC	5 cut(s)	200, 451, 456, 607, 1099
BaeGI	GKGCMC	1 cut(s)	989
BanI	GGYRCC	3 cut(s)	630, 736, 1090
BanII	GRGCYC	2 cut(s)	222, 1074
BauI	CACGAG	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	1311
Bbv12I	GWGCWC	3 cut(s)	222, 318, 798
BbvCI	CCTCAGC	1 cut(s)	1133
BbvI	GCAGC	7 cut(s)	183, 394, 420, 510, 861, 1127, 1130
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	4 cut(s)	153, 516, 724, 1288
BciT130I	CCWGG	1 cut(s)	768
BciVI	GTATCC	2 cut(s)	172, 1177
BcnI	CCSGG	4 cut(s)	158, 159, 460, 562
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	18
BfoI	RGCGCY	2 cut(s)	634, 855
BfuI	GTATCC	2 cut(s)	172, 1177
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	5 cut(s)	158, 159, 460, 562, 768
Bme18I	GGWCC	5 cut(s)	200, 451, 456, 607, 1099
BmeRI	GACNNNNNGTC	2 cut(s)	571, 1195
BmeT110I	CYCGRG	1 cut(s)	157
BmgT120I	GGNCC	6 cut(s)	200, 451, 456, 607, 914, 1099
BmiI	GGNNCC	5 cut(s)	530, 632, 738, 915, 1092
BmrFI	CCNGG	5 cut(s)	158, 159, 460, 562, 768
BmsI	GCATC	3 cut(s)	23, 694, 721
BpiI	GAAGAC	1 cut(s)	1311
BpmI	CTGGAG	3 cut(s)	236, 646, 1103
Bpu10I	CCTNAGC	1 cut(s)	1133
BpuMI	CCSGG	4 cut(s)	158, 159, 460, 562
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	4 cut(s)	338, 558, 631, 1316
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	8 cut(s)	42, 157, 561, 740, 1074, 1102, 1306, 1338
BsaWI	WCCGGW	2 cut(s)	453, 901
BsaXI	ACNNNNNCTCC	2 cut(s)	939, 969
Bsc4I	CCNNNNNNNGG	4 cut(s)	525, 643, 733, 1108
Bse118I	RCCGGY	4 cut(s)	363, 609, 916, 1279
Bse1I	ACTGG	3 cut(s)	132, 494, 629
Bse3DI	GCAATG	1 cut(s)	1224
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	8 cut(s)	42, 157, 561, 740, 1074, 1102, 1306, 1338
BseGI	GGATG	2 cut(s)	52, 832
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	4 cut(s)	525, 643, 733, 1108
BseMI	GCAATG	1 cut(s)	1224
BseMII	CTCAG	3 cut(s)	181, 920, 1124
BseNI	ACTGG	3 cut(s)	132, 494, 629
BseRI	GAGGAG	4 cut(s)	42, 45, 957, 960
BseSI	GKGCMC	1 cut(s)	989
BseX3I	CGGCCG	1 cut(s)	645
BseXI	GCAGC	7 cut(s)	183, 394, 420, 510, 861, 1127, 1130
BseYI	CCCAGC	2 cut(s)	174, 1048
Bsh1236I	CGCG	3 cut(s)	585, 671, 792
Bsh1285I	CGRYCG	1 cut(s)	648
BshFI	GGCC	5 cut(s)	302, 647, 763, 916, 1283
BshNI	GGYRCC	3 cut(s)	630, 736, 1090
BsiEI	CGRYCG	1 cut(s)	648
BsiHKAI	GWGCWC	3 cut(s)	222, 318, 798
BsiHKCI	CYCGRG	1 cut(s)	157
BsiSI	CCGG	9 cut(s)	158, 364, 454, 459, 561, 610, 902, 917, 1280
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	4 cut(s)	525, 643, 733, 1108
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	5 cut(s)	302, 647, 763, 916, 1283
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	157
Bsp1286I	GDGCHC	5 cut(s)	222, 318, 798, 989, 1074
Bsp143I	GATC	5 cut(s)	649, 770, 932, 950, 1171
Bsp19I	CCATGG	2 cut(s)	1074, 1102
BspANI	GGCC	5 cut(s)	302, 647, 763, 916, 1283
BspCNI	CTCAG	3 cut(s)	180, 921, 1125
BspFNI	CGCG	3 cut(s)	585, 671, 792
BspHI	TCATGA	1 cut(s)	513
BspLI	GGNNCC	5 cut(s)	530, 632, 738, 915, 1092
BspPI	GGATC	3 cut(s)	644, 778, 958
BspT107I	GGYRCC	3 cut(s)	630, 736, 1090
BspTNI	GGTCTC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	732
BsrDI	GCAATG	1 cut(s)	1224
BsrFI	RCCGGY	4 cut(s)	363, 609, 916, 1279
BsrI	ACTGG	3 cut(s)	132, 494, 629
BssAI	RCCGGY	4 cut(s)	363, 609, 916, 1279
BssECI	CCNNGG	8 cut(s)	42, 157, 561, 740, 1074, 1102, 1306, 1338
BssMI	GATC	5 cut(s)	649, 770, 932, 950, 1171
BssNI	GRCGYC	4 cut(s)	338, 558, 631, 1316
BssSI	CACGAG	1 cut(s)	208
BssT1I	CCWWGG	3 cut(s)	1074, 1102, 1338
Bst2BI	CACGAG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	2 cut(s)	103, 156
BstACI	GRCGYC	4 cut(s)	338, 558, 631, 1316
BstC8I	GCNNGC	7 cut(s)	387, 790, 794, 856, 1123, 1277, 1281
BstDEI	CTNAG	3 cut(s)	167, 929, 1133
BstDSI	CCRYGG	3 cut(s)	740, 1074, 1102
BstF5I	GGATG	2 cut(s)	52, 832
BstFNI	CGCG	3 cut(s)	585, 671, 792
BstH2I	RGCGCY	2 cut(s)	634, 855
BstHHI	GCGC	5 cut(s)	14, 585, 633, 673, 854
BstKTI	GATC	5 cut(s)	652, 773, 935, 953, 1174
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	5 cut(s)	649, 770, 932, 950, 1171
BstMCI	CGRYCG	1 cut(s)	648
BstMWI	GCNNNNNNNGC	3 cut(s)	364, 504, 855
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	5 cut(s)	156, 157, 458, 560, 766
BstSLI	GKGCMC	1 cut(s)	989
BstUI	CGCG	3 cut(s)	585, 671, 792
BstV1I	GCAGC	7 cut(s)	183, 394, 420, 510, 861, 1127, 1130
BstV2I	GAAGAC	1 cut(s)	1311
BstX2I	RGATCY	1 cut(s)	770
BstXI	CCANNNNNNTGG	2 cut(s)	1081, 1339
BstYI	RGATCY	1 cut(s)	770
BstZI	CGGCCG	1 cut(s)	645
BsuI	GTATCC	2 cut(s)	172, 1177
BsuRI	GGCC	5 cut(s)	302, 647, 763, 916, 1283
BtgI	CCRYGG	3 cut(s)	740, 1074, 1102
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	52, 832
BtsI	GCAGTG	1 cut(s)	987
BtsIMutI	CAGTG	1 cut(s)	987
Cac8I	GCNNGC	7 cut(s)	387, 790, 794, 856, 1123, 1277, 1281
CaiI	CAGNNNCTG	1 cut(s)	174
CciI	TCATGA	1 cut(s)	513
CfoI	GCGC	5 cut(s)	14, 585, 633, 673, 854
Cfr10I	RCCGGY	4 cut(s)	363, 609, 916, 1279
Cfr13I	GGNCC	6 cut(s)	200, 451, 456, 607, 914, 1099
Cfr9I	CCCGGG	1 cut(s)	157
CpoI	CGGWCCG	1 cut(s)	456
CseI	GACGC	2 cut(s)	346, 566
Csp6I	GTAC	5 cut(s)	135, 397, 481, 487, 877
CspI	CGGWCCG	1 cut(s)	456
CviAII	CATG	9 cut(s)	223, 319, 514, 895, 1001, 1075, 1103, 1153, 1333
CviQI	GTAC	5 cut(s)	135, 397, 481, 487, 877
DdeI	CTNAG	3 cut(s)	167, 929, 1133
DinI	GGCGCC	1 cut(s)	632
DpnI	GATC	5 cut(s)	651, 772, 934, 952, 1173
DpnII	GATC	5 cut(s)	649, 770, 932, 950, 1171
DriI	GACNNNNNGTC	2 cut(s)	571, 1195
EaeI	YGGCCR	4 cut(s)	300, 645, 761, 1281
EagI	CGGCCG	1 cut(s)	645
Eam1104I	CTCTTC	2 cut(s)	103, 156
Eam1105I	GACNNNNNGTC	2 cut(s)	571, 1195
EarI	CTCTTC	2 cut(s)	103, 156
EciI	GGCGGA	1 cut(s)	879
Ecl136II	GAGCTC	1 cut(s)	220
EclXI	CGGCCG	1 cut(s)	645
Eco130I	CCWWGG	3 cut(s)	1074, 1102, 1338
Eco24I	GRGCYC	2 cut(s)	222, 1074
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	5 cut(s)	200, 451, 456, 607, 1099
Eco47III	AGCGCT	1 cut(s)	853
Eco52I	CGGCCG	1 cut(s)	645
Eco53kI	GAGCTC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	699
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	3 cut(s)	1074, 1102, 1338
EcoT38I	GRGCYC	2 cut(s)	222, 1074
EgeI	GGCGCC	1 cut(s)	632
EheI	GGCGCC	1 cut(s)	632
ErhI	CCWWGG	3 cut(s)	1074, 1102, 1338
FaeI	CATG	9 cut(s)	226, 322, 517, 898, 1004, 1078, 1106, 1156, 1336
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	9 cut(s)	222, 318, 513, 894, 1000, 1074, 1102, 1152, 1332
FauI	CCCGC	2 cut(s)	411, 717
FokI	GGATG	2 cut(s)	59, 819
FriOI	GRGCYC	2 cut(s)	222, 1074
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	5 cut(s)	13, 584, 632, 672, 853
GsaI	CCCAGC	2 cut(s)	178, 1052
GsuI	CTGGAG	3 cut(s)	236, 646, 1103
HaeII	RGCGCY	2 cut(s)	634, 855
HaeIII	GGCC	5 cut(s)	302, 647, 763, 916, 1283
HapII	CCGG	9 cut(s)	158, 364, 454, 459, 561, 610, 902, 917, 1280
HgaI	GACGC	2 cut(s)	346, 566
HhaI	GCGC	5 cut(s)	14, 585, 633, 673, 854
Hin1I	GRCGYC	4 cut(s)	338, 558, 631, 1316
Hin1II	CATG	9 cut(s)	226, 322, 517, 898, 1004, 1078, 1106, 1156, 1336
Hin6I	GCGC	5 cut(s)	12, 583, 631, 671, 852
HinP1I	GCGC	5 cut(s)	12, 583, 631, 671, 852
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	9 cut(s)	227, 260, 373, 410, 588, 596, 745, 898, 1085
HpaII	CCGG	9 cut(s)	158, 364, 454, 459, 561, 610, 902, 917, 1280
HphI	GGTGA	6 cut(s)	105, 346, 382, 605, 671, 901
Hpy166II	GTNNAC	4 cut(s)	417, 749, 892, 1150
Hpy188I	TCNGA	7 cut(s)	43, 56, 378, 843, 930, 1171, 1180
Hpy188III	TCNNGA	6 cut(s)	18, 203, 257, 514, 538, 1082
Hpy8I	GTNNAC	4 cut(s)	417, 749, 892, 1150
Hpy99I	CGWCG	3 cut(s)	235, 560, 1274
HpyAV	CCTTC	4 cut(s)	421, 457, 535, 598
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4IV	ACGT	3 cut(s)	510, 885, 1316
HpyCH4V	TGCA	2 cut(s)	788, 1217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	364, 504, 855
HpyF3I	CTNAG	3 cut(s)	167, 929, 1133
HpySE526I	ACGT	3 cut(s)	510, 885, 1316
Hsp92I	GRCGYC	4 cut(s)	338, 558, 631, 1316
Hsp92II	CATG	9 cut(s)	226, 322, 517, 898, 1004, 1078, 1106, 1156, 1336
HspAI	GCGC	5 cut(s)	12, 583, 631, 671, 852
KasI	GGCGCC	1 cut(s)	630
KroI	GCCGGC	1 cut(s)	1279
KroNI	GCCGGC	1 cut(s)	1281
Kzo9I	GATC	5 cut(s)	649, 770, 932, 950, 1171
LmnI	GCTCC	3 cut(s)	217, 441, 528
Lsp1109I	GCAGC	7 cut(s)	183, 394, 420, 510, 861, 1127, 1130
LweI	GCATC	3 cut(s)	23, 694, 721
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	3 cut(s)	510, 885, 1316
MaeIII	GTNAC	2 cut(s)	334, 1187
MalI	GATC	5 cut(s)	651, 772, 934, 952, 1173
MbiI	CCGCTC	1 cut(s)	732
MboI	GATC	5 cut(s)	649, 770, 932, 950, 1171
MfeI	CAATTG	1 cut(s)	783
MflI	RGATCY	1 cut(s)	770
MhlI	GDGCHC	5 cut(s)	222, 318, 798, 989, 1074
MluCI	AATT	8 cut(s)	4, 442, 691, 699, 783, 814, 968, 1256
Mly113I	GGCGCC	1 cut(s)	631
MlyI	GAGTC	7 cut(s)	221, 269, 404, 582, 605, 754, 1094
MmeI	TCCRAC	1 cut(s)	1158
MroNI	GCCGGC	1 cut(s)	1279
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	3 cut(s)	441, 1059, 1259
MspA1I	CMGCKG	3 cut(s)	174, 406, 1048
MspI	CCGG	9 cut(s)	158, 364, 454, 459, 561, 610, 902, 917, 1280
MspR9I	CCNGG	5 cut(s)	158, 159, 460, 562, 768
MunI	CAATTG	1 cut(s)	783
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	3 cut(s)	585, 671, 792
MwoI	GCNNNNNNNGC	3 cut(s)	364, 504, 855
NaeI	GCCGGC	1 cut(s)	1281
NarI	GGCGCC	1 cut(s)	631
NciI	CCSGG	4 cut(s)	158, 159, 460, 562
NcoI	CCATGG	2 cut(s)	1074, 1102
NdeII	GATC	5 cut(s)	649, 770, 932, 950, 1171
NgoMIV	GCCGGC	1 cut(s)	1279
NlaIII	CATG	9 cut(s)	226, 322, 517, 898, 1004, 1078, 1106, 1156, 1336
NlaIV	GGNNCC	5 cut(s)	530, 632, 738, 915, 1092
NmeAIII	GCCGAG	2 cut(s)	366, 415
NmuCI	GTSAC	2 cut(s)	334, 1187
NspI	RCATGY	1 cut(s)	322
PagI	TCATGA	1 cut(s)	513
PciI	ACATGT	1 cut(s)	318
PcsI	WCGNNNNNNNCGW	1 cut(s)	1322
PdiI	GCCGGC	1 cut(s)	1281
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	373, 898
PflMI	CCANNNNNTGG	1 cut(s)	525
PleI	GAGTC	7 cut(s)	221, 268, 404, 582, 604, 753, 1093
PluTI	GGCGCC	1 cut(s)	634
PpsI	GAGTC	7 cut(s)	221, 268, 404, 582, 604, 753, 1093
PscI	ACATGT	1 cut(s)	318
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	766
PspFI	CCCAGC	2 cut(s)	174, 1048
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	5 cut(s)	530, 632, 738, 915, 1092
PspPI	GGNCC	6 cut(s)	200, 451, 456, 607, 914, 1099
PstNI	CAGNNNCTG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	770
PvuII	CAGCTG	2 cut(s)	174, 1048
RsaI	GTAC	5 cut(s)	136, 398, 482, 488, 878
RsaNI	GTAC	5 cut(s)	135, 397, 481, 487, 877
Rsr2I	CGGWCCG	1 cut(s)	456
RsrII	CGGWCCG	1 cut(s)	456
SacI	GAGCTC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	441, 1059, 1259
Sau3AI	GATC	5 cut(s)	649, 770, 932, 950, 1171
Sau96I	GGNCC	6 cut(s)	200, 451, 456, 607, 914, 1099
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	7 cut(s)	221, 269, 404, 582, 605, 754, 1094
ScrFI	CCNGG	5 cut(s)	158, 159, 460, 562, 768
SduI	GDGCHC	5 cut(s)	222, 318, 798, 989, 1074
SfaNI	GCATC	3 cut(s)	23, 694, 721
SfoI	GGCGCC	1 cut(s)	632
SinI	GGWCC	5 cut(s)	200, 451, 456, 607, 1099
SmaI	CCCGGG	1 cut(s)	159
Sse9I	AATT	8 cut(s)	4, 442, 691, 699, 783, 814, 968, 1256
SspDI	GGCGCC	1 cut(s)	630
SspMI	CTAG	1 cut(s)	18
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	5 cut(s)	156, 157, 458, 560, 766
StyI	CCWWGG	3 cut(s)	1074, 1102, 1338
TaaI	ACNGT	1 cut(s)	295
TaiI	ACGT	3 cut(s)	513, 888, 1319
TaqI	TCGA	6 cut(s)	263, 324, 447, 555, 1068, 1347
TasI	AATT	8 cut(s)	4, 442, 691, 699, 783, 814, 968, 1256
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	6 cut(s)	192, 238, 302, 636, 647, 763
TfiI	GAWTC	2 cut(s)	373, 898
Tru1I	TTAA	3 cut(s)	441, 1059, 1259
Tru9I	TTAA	3 cut(s)	441, 1059, 1259
TscAI	CASTG	1 cut(s)	994
TseFI	GTSAC	2 cut(s)	334, 1187
TseI	GCWGC	7 cut(s)	171, 382, 433, 498, 849, 1115, 1118
Tsp45I	GTSAC	2 cut(s)	334, 1187
TspDTI	ATGAA	7 cut(s)	17, 63, 665, 821, 827, 911, 1311
TspGWI	ACGGA	1 cut(s)	894
TspMI	CCCGGG	1 cut(s)	157
TspRI	CASTG	1 cut(s)	994
Van91I	CCANNNNNTGG	1 cut(s)	525
VpaK11BI	GGWCC	5 cut(s)	200, 451, 456, 607, 1099
XapI	RAATTY	2 cut(s)	4, 699
XbaI	TCTAGA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	322
XmaI	CCCGGG	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	1 cut(s)	18
ZraI	GACGTC	1 cut(s)	1317
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.