Prupe.5G134900_v2.0.a1

B3 DNA binding domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
12837398 .. 12839759
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G134900.1

Sequence Viewer

Length: 1245 bp
ATGGACTCGTCGCCGAGAGATAGAGATAATAATGAAGAAGACGATGGCAGTCGAAGAGAAGAAAACCCAATCGCCATAGAAAGGGAGCACATGTTCGACAAAGTTGTGACGCCAAGCGATGTGGGGAAGCTCAATCGCCTCGTCATCCCAAAGCAGCACGCAGAGAAGTACTTTCCTTTGGATTCTTCCACCAACGAGAAGGGGCTTCTGCTCAATTTCGAGGACCGGAATGGGAAGCCGTGGAGGTTTCGATACTCCTACTGGAACAGCAGCCAGAGCTATGTGATGACCAAGGGCTGGAGCAGATTCGTCAAGGAGAAGAAGCTCGACGCCGGAGACATCGTCTCCTTCCAGCGAGGCCTTGGGGAGTTGGGGAAAGACCGGCTTTTTATTGACTGGCGGCGCCGCCCAGATGCGCCTGATCCCATCCACCATAACCACCACCATCCCCACCAGCTTCATCCTCATCATCATCATTACCAGCCCAATTTCGCAATCGCTCATCATCAGCAGCAGCAGCAGCAGCATTTCTCCTGGAACCACCACCAACGCTCGGTTCCATGGAGCCCGCTATTGATGAGGCCACCACCCGGGGGAGGACTCGTACCCCGGGACCACTTGCAACACTTGTCCCAGCAGATTAATTACAGCATGAATATGCATCACCCGTATCGAAATACAGGGACAAGTAGCACTGCTGGTGGTGGTAGTGGTGGAAGTTCTTATGGTTACGGAAATGTGGTTAGCTCTTCTGGACCAATTTATTATCTGAGATCGGCCTCATCCACTGCCCCACATGAATACGAGGGCAGCGGATTAGGATTACAACAACAACTGCAGCAGCAGCAGCAACAGCAACAACAACAACAAGTACAGCTCCTGGGTCGGGTTCATGAGCCGAATATGGTTTTGGAGTCGGTGCCTGTGGTCCACGGGAAGGCAGCAGCCAAGAGACTGAGGCTATTCGGGGTGAACATGGATTGCCCCATATCGGAGTCGGATCATGAATGTGACATATTGTCGTCGTCTTCATCTCAATATCATCATGCTACAATGGCATCTCCCTCTCACCAACTTTCGCCTTCCTCACAACCCCCACTCCAATTAAGGCTCTTTGATGGCACGCCTCTGCACTCAACTACAACAACAACAACTTCTGCTAGTACCACCACCGACTTTCTCAGCATCAGAGGCAAGCACCAGGCTTCTTCTCCATTCTCCATGTCCTTGGATTTTGACGTCTGA

Protein Analysis

415

Amino Acids

46.91

Weight (kDa)

7.23

Isoelectric Point (pI)

61.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012359)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1242
AccB1I GGYRCC 2 cut(s) 402, 919
AccB7I CCANNNNNTGG 1 cut(s) 297
AciI CCGC 4 cut(s) 400, 406, 569, 813
AclWI GGATC 2 cut(s) 416, 1008
AcyI GRCGYC 4 cut(s) 110, 330, 403, 1239
AfaI GTAC 4 cut(s) 170, 606, 873, 1165
AfiI CCNNNNNNNGG 9 cut(s) 81, 297, 553, 590, 593, 596, 886, 937, 991
AflIII ACRYGT 1 cut(s) 90
AhdI GACNNNNNGTC 1 cut(s) 1018
AjnI CCWGG 3 cut(s) 533, 879, 1200
AjuI GAANNNNNNNTTGG 4 cut(s) 540, 572, 893, 925
AloI GAACNNNNNNTCC 2 cut(s) 77, 109
AluBI AGCT 6 cut(s) 130, 279, 325, 457, 747, 877
AluI AGCT 6 cut(s) 130, 279, 325, 457, 747, 877
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 3 cut(s) 330, 349, 946
AlwI GGATC 2 cut(s) 416, 1008
AlwNI CAGNNNCTG 1 cut(s) 880
Ama87I CYCGRG 2 cut(s) 590, 609
AoxI GGCC 3 cut(s) 358, 581, 777
AseI ATTAAT 1 cut(s) 642
AspLEI GCGC 2 cut(s) 405, 418
AspS9I GGNCC 4 cut(s) 223, 613, 755, 928
AsuC2I CCSGG 4 cut(s) 591, 592, 610, 611
AsuHPI GGTGA 3 cut(s) 656, 982, 1061
AvaI CYCGRG 2 cut(s) 590, 609
AvaII GGWCC 4 cut(s) 223, 613, 755, 928
BanI GGYRCC 2 cut(s) 402, 919
BanII GRGCYC 1 cut(s) 569
BbsI GAAGAC 2 cut(s) 45, 1020
Bbv12I GWGCWC 1 cut(s) 90
BccI CCATC 4 cut(s) 38, 434, 453, 1112
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 3 cut(s) 535, 881, 1202
BcnI CCSGG 4 cut(s) 591, 592, 610, 611
BcoDI GTCTC 3 cut(s) 330, 349, 946
BfaI CTAG 1 cut(s) 1161
BfmI CTRYAG 1 cut(s) 836
BfoI RGCGCY 1 cut(s) 406
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 7 cut(s) 535, 591, 592, 610, 611, 881, 1202
Bme18I GGWCC 4 cut(s) 223, 613, 755, 928
BmeRI GACNNNNNGTC 1 cut(s) 1018
BmeT110I CYCGRG 2 cut(s) 590, 609
BmgT120I GGNCC 4 cut(s) 223, 613, 755, 928
BmiI GGNNCC 6 cut(s) 404, 539, 558, 566, 614, 921
BmrFI CCNGG 7 cut(s) 535, 591, 592, 610, 611, 881, 1202
BmsI GCATC 4 cut(s) 403, 670, 1067, 1194
BpiI GAAGAC 2 cut(s) 45, 1020
BpmI CTGGAG 1 cut(s) 319
BpuMI CCSGG 4 cut(s) 591, 592, 610, 611
BsaHI GRCGYC 4 cut(s) 110, 330, 403, 1239
BsaWI WCCGGW 1 cut(s) 225
Bsc4I CCNNNNNNNGG 9 cut(s) 81, 297, 553, 590, 593, 596, 886, 937, 991
Bse118I RCCGGY 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 266, 401
BseBI CCWGG 3 cut(s) 535, 881, 1202
BseGI GGATG 5 cut(s) 144, 426, 445, 460, 782
BseLI CCNNNNNNNGG 9 cut(s) 81, 297, 553, 590, 593, 596, 886, 937, 991
BseMII CTCAG 3 cut(s) 761, 947, 1195
BseNI ACTGG 2 cut(s) 266, 401
BseYI CCCAGC 1 cut(s) 633
BsgI GTGCAG 1 cut(s) 1115
BshFI GGCC 3 cut(s) 360, 583, 779
BshNI GGYRCC 2 cut(s) 402, 919
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 2 cut(s) 590, 609
BsiSI CCGG 5 cut(s) 226, 333, 382, 591, 610
BslFI GGGAC 3 cut(s) 616, 626, 697
BslI CCNNNNNNNGG 9 cut(s) 81, 297, 553, 590, 593, 596, 886, 937, 991
BsmAI GTCTC 3 cut(s) 330, 349, 946
BsmBI CGTCTC 1 cut(s) 349
BsmFI GGGAC 3 cut(s) 616, 626, 697
BsnI GGCC 3 cut(s) 360, 583, 779
BsoBI CYCGRG 2 cut(s) 590, 609
Bsp1286I GDGCHC 2 cut(s) 90, 569
Bsp143I GATC 3 cut(s) 421, 773, 1000
Bsp19I CCATGG 1 cut(s) 560
BspACI CCGC 4 cut(s) 400, 406, 569, 813
BspANI GGCC 3 cut(s) 360, 583, 779
BspCNI CTCAG 3 cut(s) 762, 948, 1194
BspHI TCATGA 2 cut(s) 892, 1003
BspLI GGNNCC 6 cut(s) 404, 539, 558, 566, 614, 921
BspMAI CTGCAG 1 cut(s) 840
BspPI GGATC 2 cut(s) 416, 1008
BspQI GCTCTTC 1 cut(s) 754
BspT107I GGYRCC 2 cut(s) 402, 919
BsrFI RCCGGY 1 cut(s) 381
BsrI ACTGG 2 cut(s) 266, 401
BssAI RCCGGY 1 cut(s) 381
BssMI GATC 3 cut(s) 421, 773, 1000
BssNI GRCGYC 4 cut(s) 110, 330, 403, 1239
BssT1I CCWWGG 4 cut(s) 291, 361, 560, 1227
Bst2UI CCWGG 3 cut(s) 535, 881, 1202
Bst6I CTCTTC 2 cut(s) 49, 754
BstACI GRCGYC 4 cut(s) 110, 330, 403, 1239
BstC8I GCNNGC 4 cut(s) 159, 569, 1124, 1196
BstDEI CTNAG 3 cut(s) 770, 956, 1181
BstDSI CCRYGG 3 cut(s) 239, 560, 931
BstF5I GGATG 5 cut(s) 144, 426, 445, 460, 782
BstH2I RGCGCY 1 cut(s) 406
BstHHI GCGC 2 cut(s) 405, 418
BstKTI GATC 3 cut(s) 424, 776, 1003
BstMAI GTCTC 3 cut(s) 330, 349, 946
BstMBI GATC 3 cut(s) 421, 773, 1000
BstMWI GCNNNNNNNGC 9 cut(s) 276, 517, 520, 523, 844, 847, 853, 1055, 1191
BstNI CCWGG 3 cut(s) 535, 881, 1202
BstNSI RCATGY 1 cut(s) 94
BstSCI CCNGG 7 cut(s) 533, 589, 590, 608, 609, 879, 1200
BstSFI CTRYAG 1 cut(s) 836
BstV2I GAAGAC 2 cut(s) 45, 1020
BstXI CCANNNNNNTGG 1 cut(s) 1228
BsuRI GGCC 3 cut(s) 360, 583, 779
BtgI CCRYGG 3 cut(s) 239, 560, 931
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 5 cut(s) 144, 426, 445, 460, 782
BtsI GCAGTG 2 cut(s) 693, 786
BtsIMutI CAGTG 2 cut(s) 693, 786
Cac8I GCNNGC 4 cut(s) 159, 569, 1124, 1196
CaiI CAGNNNCTG 1 cut(s) 880
CciI TCATGA 2 cut(s) 892, 1003
CfoI GCGC 2 cut(s) 405, 418
Cfr10I RCCGGY 1 cut(s) 381
Cfr13I GGNCC 4 cut(s) 223, 613, 755, 928
Cfr9I CCCGGG 2 cut(s) 590, 609
CseI GACGC 2 cut(s) 118, 338
Csp6I GTAC 4 cut(s) 169, 605, 872, 1164
CspCI CAANNNNNGTGG 2 cut(s) 102, 137
CviAII CATG 9 cut(s) 91, 561, 652, 797, 893, 976, 1004, 1046, 1222
CviQI GTAC 4 cut(s) 169, 605, 872, 1164
DdeI CTNAG 3 cut(s) 770, 956, 1181
DinI GGCGCC 1 cut(s) 404
DpnI GATC 3 cut(s) 423, 775, 1002
DpnII GATC 3 cut(s) 421, 773, 1000
DriI GACNNNNNGTC 1 cut(s) 1018
Eam1104I CTCTTC 2 cut(s) 49, 754
Eam1105I GACNNNNNGTC 1 cut(s) 1018
EarI CTCTTC 2 cut(s) 49, 754
Eco130I CCWWGG 4 cut(s) 291, 361, 560, 1227
Eco147I AGGCCT 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 569
Eco47I GGWCC 4 cut(s) 223, 613, 755, 928
Eco88I CYCGRG 2 cut(s) 590, 609
EcoRII CCWGG 3 cut(s) 533, 879, 1200
EcoT14I CCWWGG 4 cut(s) 291, 361, 560, 1227
EcoT22I ATGCAT 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 569
EgeI GGCGCC 1 cut(s) 404
EheI GGCGCC 1 cut(s) 404
ErhI CCWWGG 4 cut(s) 291, 361, 560, 1227
Esp3I CGTCTC 1 cut(s) 349
FaeI CATG 9 cut(s) 94, 564, 655, 800, 896, 979, 1007, 1049, 1225
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 3 cut(s) 616, 626, 697
FatI CATG 9 cut(s) 90, 560, 651, 796, 892, 975, 1003, 1045, 1221
FauI CCCGC 1 cut(s) 576
FokI GGATG 5 cut(s) 131, 413, 432, 447, 769
FriOI GRGCYC 1 cut(s) 569
FspBI CTAG 1 cut(s) 1161
GlaI GCGC 2 cut(s) 404, 417
GsaI CCCAGC 1 cut(s) 637
GsuI CTGGAG 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 406
HaeIII GGCC 3 cut(s) 360, 583, 779
HapII CCGG 5 cut(s) 226, 333, 382, 591, 610
HgaI GACGC 2 cut(s) 118, 338
HhaI GCGC 2 cut(s) 405, 418
Hin1I GRCGYC 4 cut(s) 110, 330, 403, 1239
Hin1II CATG 9 cut(s) 94, 564, 655, 800, 896, 979, 1007, 1049, 1225
Hin6I GCGC 2 cut(s) 403, 416
HinP1I GCGC 2 cut(s) 403, 416
HinfI GANTC 6 cut(s) 5, 182, 306, 600, 914, 995
HpaII CCGG 5 cut(s) 226, 333, 382, 591, 610
HphI GGTGA 3 cut(s) 656, 982, 1061
Hpy166II GTNNAC 2 cut(s) 931, 973
Hpy188I TCNGA 5 cut(s) 771, 994, 1000, 1190, 1244
Hpy188III TCNNGA 3 cut(s) 753, 893, 1004
Hpy8I GTNNAC 2 cut(s) 931, 973
Hpy99I CGWCG 3 cut(s) 13, 332, 1027
HpyAV CCTTC 4 cut(s) 193, 358, 931, 1092
HpyCH4IV ACGT 1 cut(s) 1239
HpyCH4V TGCA 4 cut(s) 622, 661, 838, 1132
HpyF10VI GCNNNNNNNGC 9 cut(s) 276, 517, 520, 523, 844, 847, 853, 1055, 1191
HpyF3I CTNAG 3 cut(s) 770, 956, 1181
HpySE526I ACGT 1 cut(s) 1239
Hsp92I GRCGYC 4 cut(s) 110, 330, 403, 1239
Hsp92II CATG 9 cut(s) 94, 564, 655, 800, 896, 979, 1007, 1049, 1225
HspAI GCGC 2 cut(s) 403, 416
KasI GGCGCC 1 cut(s) 402
Kzo9I GATC 3 cut(s) 421, 773, 1000
LguI GCTCTTC 1 cut(s) 754
LmnI GCTCC 4 cut(s) 85, 300, 564, 882
LweI GCATC 4 cut(s) 403, 670, 1067, 1194
MaeI CTAG 1 cut(s) 1161
MaeII ACGT 1 cut(s) 1239
MaeIII GTNAC 3 cut(s) 106, 728, 1010
MalI GATC 3 cut(s) 423, 775, 1002
MboI GATC 3 cut(s) 421, 773, 1000
MboII GAAGA 9 cut(s) 47, 50, 66, 71, 177, 331, 741, 1020, 1200
MhlI GDGCHC 2 cut(s) 90, 569
MluCI AATT 5 cut(s) 214, 487, 643, 759, 1103
Mly113I GGCGCC 1 cut(s) 403
MlyI GAGTC 3 cut(s) 594, 923, 1004
MmeI TCCRAC 1 cut(s) 978
Mph1103I ATGCAT 1 cut(s) 663
MseI TTAA 2 cut(s) 642, 1106
MslI CAYNNNNRTG 2 cut(s) 656, 1008
MspA1I CMGCKG 1 cut(s) 813
MspI CCGG 5 cut(s) 226, 333, 382, 591, 610
MspR9I CCNGG 7 cut(s) 535, 591, 592, 610, 611, 881, 1202
MvaI CCWGG 3 cut(s) 535, 881, 1202
MwoI GCNNNNNNNGC 9 cut(s) 276, 517, 520, 523, 844, 847, 853, 1055, 1191
NarI GGCGCC 1 cut(s) 403
NciI CCSGG 4 cut(s) 591, 592, 610, 611
NcoI CCATGG 1 cut(s) 560
NdeII GATC 3 cut(s) 421, 773, 1000
NlaIII CATG 9 cut(s) 94, 564, 655, 800, 896, 979, 1007, 1049, 1225
NlaIV GGNNCC 6 cut(s) 404, 539, 558, 566, 614, 921
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 2 cut(s) 106, 1010
NsiI ATGCAT 1 cut(s) 663
NspI RCATGY 1 cut(s) 94
PagI TCATGA 2 cut(s) 892, 1003
PceI AGGCCT 1 cut(s) 360
PciI ACATGT 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 754
PfeI GAWTC 2 cut(s) 182, 306
PflFI GACNNNGTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 297
PfoI TCCNGGA 1 cut(s) 533
PleI GAGTC 3 cut(s) 594, 922, 1003
PluTI GGCGCC 1 cut(s) 406
PpsI GAGTC 3 cut(s) 594, 922, 1003
PscI ACATGT 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 642
Psp6I CCWGG 3 cut(s) 533, 879, 1200
PspFI CCCAGC 1 cut(s) 633
PspGI CCWGG 3 cut(s) 533, 879, 1200
PspN4I GGNNCC 6 cut(s) 404, 539, 558, 566, 614, 921
PspPI GGNCC 4 cut(s) 223, 613, 755, 928
PstI CTGCAG 1 cut(s) 840
PstNI CAGNNNCTG 1 cut(s) 880
PsyI GACNNNGTC 1 cut(s) 341
RsaI GTAC 4 cut(s) 170, 606, 873, 1165
RsaNI GTAC 4 cut(s) 169, 605, 872, 1164
RseI CAYNNNNRTG 2 cut(s) 656, 1008
SapI GCTCTTC 1 cut(s) 754
SaqAI TTAA 2 cut(s) 642, 1106
Sau3AI GATC 3 cut(s) 421, 773, 1000
Sau96I GGNCC 4 cut(s) 223, 613, 755, 928
ScaI AGTACT 1 cut(s) 170
SchI GAGTC 3 cut(s) 594, 923, 1004
ScrFI CCNGG 7 cut(s) 535, 591, 592, 610, 611, 881, 1202
SduI GDGCHC 2 cut(s) 90, 569
SetI ASST 8 cut(s) 132, 248, 281, 327, 459, 749, 879, 1242
SfaNI GCATC 4 cut(s) 403, 670, 1067, 1194
SfcI CTRYAG 1 cut(s) 836
SfoI GGCGCC 1 cut(s) 404
SinI GGWCC 4 cut(s) 223, 613, 755, 928
SmaI CCCGGG 2 cut(s) 592, 611
SmiMI CAYNNNNRTG 2 cut(s) 656, 1008
Sse9I AATT 5 cut(s) 214, 487, 643, 759, 1103
SseBI AGGCCT 1 cut(s) 360
SsiI CCGC 4 cut(s) 400, 406, 569, 813
SspDI GGCGCC 1 cut(s) 402
SspMI CTAG 1 cut(s) 1161
StuI AGGCCT 1 cut(s) 360
StyD4I CCNGG 7 cut(s) 533, 589, 590, 608, 609, 879, 1200
StyI CCWWGG 4 cut(s) 291, 361, 560, 1227
TaiI ACGT 1 cut(s) 1242
TaqI TCGA 6 cut(s) 52, 96, 219, 250, 327, 673
TasI AATT 5 cut(s) 214, 487, 643, 759, 1103
TatI WGTACW 2 cut(s) 168, 871
TauI GCSGC 2 cut(s) 403, 408
TfiI GAWTC 2 cut(s) 182, 306
Tru1I TTAA 2 cut(s) 642, 1106
Tru9I TTAA 2 cut(s) 642, 1106
TscAI CASTG 2 cut(s) 700, 793
TseFI GTSAC 2 cut(s) 106, 1010
Tsp45I GTSAC 2 cut(s) 106, 1010
TspDTI ATGAA 7 cut(s) 48, 449, 668, 813, 881, 1020, 1020
TspGWI ACGGA 1 cut(s) 747
TspMI CCCGGG 2 cut(s) 590, 609
TspRI CASTG 2 cut(s) 700, 793
Tth111I GACNNNGTC 1 cut(s) 341
Van91I CCANNNNNTGG 1 cut(s) 297
VpaK11BI GGWCC 4 cut(s) 223, 613, 755, 928
VspI ATTAAT 1 cut(s) 642
XceI RCATGY 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 359
XmaI CCCGGG 2 cut(s) 590, 609
XspI CTAG 1 cut(s) 1161
ZraI GACGTC 1 cut(s) 1240
ZrmI AGTACT 1 cut(s) 170
Zsp2I ATGCAT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.