Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8399923.1

Orthogroup ID

OG0012359

Physical Location & Seq

Genomic Coordinates Forward (+)

437 .. 1269

Gene Structure 833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8399923.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 833 bp

atgaatttcggcgcatctagagatggaggaggaggtttttccgaggatgaaatcagaggtaagcttcccttttcgtcttactctcccacctctccctcttcttcttcttcttcacctcacttcaacaacaccagtacggcaacagccactcttctcccgggtggtctcagcagctgggatacttacggcggcggcggaggtccagacacgaggctggagctgatggactcgtcgccgcgaaacgctgataataatcaagagtcgaacaatgaacctcatacaacagcaacagtagcggccatagagaaagagcacatgttcgacaaagtggtgacgccgagcgatgtggggaagctgaaccggctggtgattccgaagcagcacgccgagaagtacttcccgctggactcgtccaccaacgagaaggggctgctccttaatttcgaggaccggaccgggaaggcgtggcggttcaggtactcgtactggaacagcagccagagctacgtcatgaccaaagggtggagccgtttcgtgaaggagaagaagctcgacgccggcgacatcgtgtcgtttcagcgcggactcggtgagtctgggaaggaccggctctacattgactggaggcgccgcccagaagcggccgatcccaaccaccaccaccacgcgcttcatcaccagcatcacaattttggaattcctcccccgcatcattactcgttccaccgctcggtgccgtggagtccacttctaatgcggccacctggatcttcgccaacaattgcacgcgagcaccatttacagcagatgaactacagcacgaacattcatcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1900618 GO:1901371 GO:1903506 GO:1905421 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

278

Amino Acids

31.17

Weight (kDa)

8.04

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46870
fragaria_vesca	FvH4_5g10410
malus_domestica	MD06G1124400.v1.1 MD14G1141400.v1.1
prunus_persica	Prupe.5G134900_v2.0.a1
pyrus_communis	pycom06g11470 pycom14g11620
rosa_chinensis	RchiOBHm_Chr7g0187821
rosa_laevigata	RLG00000004754
rosa_multiflora	Rmu_co8399923.1_g000001 Rmu_sc0004483.1_g000041
rosa_roxburghii	Rroxscaffold_3G00267040
rosa_rugosa	Rorug06G0484500 Rorug06G0484600
rosa_samantha	Rh7AG089800 Rh7BG091400 Rh7CG090500 Rh7DG092200
rosa_wichuraiana	Rw7G007740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	627, 733
AccB7I	CCANNNNNTGG	1 cut(s)	522
AccBSI	CCGCTC	1 cut(s)	729
AccII	CGCG	4 cut(s)	238, 582, 668, 789
AclWI	GGATC	2 cut(s)	641, 775
AcoI	YGGCCR	3 cut(s)	297, 642, 758
AcsI	RAATTY	2 cut(s)	4, 696
AcyI	GRCGYC	3 cut(s)	335, 555, 628
AfaI	GTAC	4 cut(s)	136, 395, 479, 485
AfiI	CCNNNNNNNGG	3 cut(s)	522, 640, 730
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	1 cut(s)	124
AhdI	GACNNNNNGTC	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	763
AluBI	AGCT	6 cut(s)	64, 174, 220, 355, 504, 550
AluI	AGCT	6 cut(s)	64, 174, 220, 355, 504, 550
Alw21I	GWGCWC	2 cut(s)	315, 795
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	641, 775
AlwNI	CAGNNNCTG	1 cut(s)	174
Ama87I	CYCGRG	1 cut(s)	157
AoxI	GGCC	3 cut(s)	297, 642, 758
ApeKI	GCWGC	4 cut(s)	171, 379, 430, 495
ApoI	RAATTY	2 cut(s)	4, 696
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	4 cut(s)	14, 582, 630, 670
AspS9I	GGNCC	4 cut(s)	200, 448, 453, 604
AsuC2I	CCSGG	3 cut(s)	158, 159, 457
AsuHPI	GGTGA	5 cut(s)	105, 343, 379, 602, 668
AvaI	CYCGRG	1 cut(s)	157
AvaII	GGWCC	4 cut(s)	200, 448, 453, 604
BanI	GGYRCC	2 cut(s)	627, 733
BauI	CACGAG	1 cut(s)	208
Bbv12I	GWGCWC	2 cut(s)	315, 795
BbvI	GCAGC	4 cut(s)	183, 391, 417, 507
BccI	CCATC	2 cut(s)	17, 217
BceAI	ACGGC	4 cut(s)	153, 202, 513, 721
BciT130I	CCWGG	1 cut(s)	765
BciVI	GTATCC	1 cut(s)	172
BcnI	CCSGG	3 cut(s)	158, 159, 457
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	814
BfoI	RGCGCY	1 cut(s)	631
BfuI	GTATCC	1 cut(s)	172
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	4 cut(s)	158, 159, 457, 765
Bme18I	GGWCC	4 cut(s)	200, 448, 453, 604
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmeT110I	CYCGRG	1 cut(s)	157
BmgT120I	GGNCC	4 cut(s)	200, 448, 453, 604
BmiI	GGNNCC	3 cut(s)	527, 629, 735
BmrFI	CCNGG	4 cut(s)	158, 159, 457, 765
BmsI	GCATC	3 cut(s)	23, 691, 718
BpmI	CTGGAG	2 cut(s)	236, 643
BpuMI	CCSGG	3 cut(s)	158, 159, 457
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	3 cut(s)	335, 555, 628
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	42, 157, 737
BsaWI	WCCGGW	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	3 cut(s)	522, 640, 730
Bse118I	RCCGGY	3 cut(s)	360, 557, 606
Bse1I	ACTGG	3 cut(s)	132, 491, 626
Bse8I	GATNNNNATC	1 cut(s)	252
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	3 cut(s)	42, 157, 737
BseGI	GGATG	2 cut(s)	52, 829
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	522, 640, 730
BseMII	CTCAG	1 cut(s)	181
BseNI	ACTGG	3 cut(s)	132, 491, 626
BseRI	GAGGAG	2 cut(s)	42, 45
BseX3I	CGGCCG	1 cut(s)	642
BseXI	GCAGC	4 cut(s)	183, 391, 417, 507
BseYI	CCCAGC	1 cut(s)	174
Bsh1236I	CGCG	4 cut(s)	238, 582, 668, 789
Bsh1285I	CGRYCG	1 cut(s)	645
BshFI	GGCC	3 cut(s)	299, 644, 760
BshNI	GGYRCC	2 cut(s)	627, 733
BsiEI	CGRYCG	1 cut(s)	645
BsiHKAI	GWGCWC	2 cut(s)	315, 795
BsiHKCI	CYCGRG	1 cut(s)	157
BsiSI	CCGG	6 cut(s)	158, 361, 451, 456, 558, 607
BslI	CCNNNNNNNGG	3 cut(s)	522, 640, 730
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	3 cut(s)	299, 644, 760
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	157
Bsp1286I	GDGCHC	2 cut(s)	315, 795
Bsp143I	GATC	2 cut(s)	646, 767
BspANI	GGCC	3 cut(s)	299, 644, 760
BspCNI	CTCAG	1 cut(s)	180
BspFNI	CGCG	4 cut(s)	238, 582, 668, 789
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	3 cut(s)	527, 629, 735
BspPI	GGATC	2 cut(s)	641, 775
BspT107I	GGYRCC	2 cut(s)	627, 733
BspTNI	GGTCTC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	729
BsrFI	RCCGGY	3 cut(s)	360, 557, 606
BsrI	ACTGG	3 cut(s)	132, 491, 626
BssAI	RCCGGY	3 cut(s)	360, 557, 606
BssECI	CCNNGG	3 cut(s)	42, 157, 737
BssMI	GATC	2 cut(s)	646, 767
BssNI	GRCGYC	3 cut(s)	335, 555, 628
BssSI	CACGAG	1 cut(s)	208
Bst2BI	CACGAG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	1 cut(s)	292
Bst6I	CTCTTC	2 cut(s)	103, 156
BstACI	GRCGYC	3 cut(s)	335, 555, 628
BstC8I	GCNNGC	4 cut(s)	384, 559, 787, 791
BstDEI	CTNAG	1 cut(s)	167
BstDSI	CCRYGG	1 cut(s)	737
BstF5I	GGATG	2 cut(s)	52, 829
BstFNI	CGCG	4 cut(s)	238, 582, 668, 789
BstH2I	RGCGCY	1 cut(s)	631
BstHHI	GCGC	4 cut(s)	14, 582, 630, 670
BstKTI	GATC	2 cut(s)	649, 770
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	2 cut(s)	646, 767
BstMCI	CGRYCG	1 cut(s)	645
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 361, 501
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	4 cut(s)	156, 157, 455, 763
BstSFI	CTRYAG	1 cut(s)	814
BstUI	CGCG	4 cut(s)	238, 582, 668, 789
BstV1I	GCAGC	4 cut(s)	183, 391, 417, 507
BstX2I	RGATCY	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	767
BstZI	CGGCCG	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	3 cut(s)	299, 644, 760
BtgI	CCRYGG	1 cut(s)	737
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	52, 829
Cac8I	GCNNGC	4 cut(s)	384, 559, 787, 791
CaiI	CAGNNNCTG	1 cut(s)	174
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	4 cut(s)	14, 582, 630, 670
Cfr10I	RCCGGY	3 cut(s)	360, 557, 606
Cfr13I	GGNCC	4 cut(s)	200, 448, 453, 604
Cfr9I	CCCGGG	1 cut(s)	157
CpoI	CGGWCCG	1 cut(s)	453
CseI	GACGC	2 cut(s)	343, 563
Csp6I	GTAC	4 cut(s)	135, 394, 478, 484
CspI	CGGWCCG	1 cut(s)	453
CviAII	CATG	2 cut(s)	316, 511
CviQI	GTAC	4 cut(s)	135, 394, 478, 484
DdeI	CTNAG	1 cut(s)	167
DinI	GGCGCC	1 cut(s)	629
DpnI	GATC	2 cut(s)	648, 769
DpnII	GATC	2 cut(s)	646, 767
DriI	GACNNNNNGTC	1 cut(s)	568
EaeI	YGGCCR	3 cut(s)	297, 642, 758
EagI	CGGCCG	1 cut(s)	642
Eam1104I	CTCTTC	2 cut(s)	103, 156
Eam1105I	GACNNNNNGTC	1 cut(s)	568
EarI	CTCTTC	2 cut(s)	103, 156
EciI	GGCGGA	1 cut(s)	210
EclXI	CGGCCG	1 cut(s)	642
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	4 cut(s)	200, 448, 453, 604
Eco52I	CGGCCG	1 cut(s)	642
Eco88I	CYCGRG	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	696
EcoRII	CCWGG	1 cut(s)	763
EgeI	GGCGCC	1 cut(s)	629
EheI	GGCGCC	1 cut(s)	629
FaeI	CATG	2 cut(s)	319, 514
FaiI	YATR	4 cut(s)	279, 302, 317, 512
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FatI	CATG	2 cut(s)	315, 510
FauI	CCCGC	2 cut(s)	408, 714
FokI	GGATG	2 cut(s)	59, 816
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	4 cut(s)	13, 581, 629, 669
GsaI	CCCAGC	1 cut(s)	178
GsuI	CTGGAG	2 cut(s)	236, 643
HaeII	RGCGCY	1 cut(s)	631
HaeIII	GGCC	3 cut(s)	299, 644, 760
HapII	CCGG	6 cut(s)	158, 361, 451, 456, 558, 607
HgaI	GACGC	2 cut(s)	343, 563
HhaI	GCGC	4 cut(s)	14, 582, 630, 670
Hin1I	GRCGYC	3 cut(s)	335, 555, 628
Hin1II	CATG	2 cut(s)	319, 514
Hin6I	GCGC	4 cut(s)	12, 580, 628, 668
HinP1I	GCGC	4 cut(s)	12, 580, 628, 668
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	7 cut(s)	227, 260, 370, 407, 585, 593, 742
HpaII	CCGG	6 cut(s)	158, 361, 451, 456, 558, 607
HphI	GGTGA	5 cut(s)	105, 343, 379, 602, 668
Hpy166II	GTNNAC	2 cut(s)	414, 746
Hpy188I	TCNGA	3 cut(s)	43, 56, 375
Hpy188III	TCNNGA	5 cut(s)	18, 203, 257, 511, 535
Hpy8I	GTNNAC	2 cut(s)	414, 746
Hpy99I	CGWCG	2 cut(s)	235, 557
HpyAV	CCTTC	4 cut(s)	418, 454, 532, 595
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	1 cut(s)	785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 361, 501
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	507
Hsp92I	GRCGYC	3 cut(s)	335, 555, 628
Hsp92II	CATG	2 cut(s)	319, 514
HspAI	GCGC	4 cut(s)	12, 580, 628, 668
KasI	GGCGCC	1 cut(s)	627
KroI	GCCGGC	1 cut(s)	557
KroNI	GCCGGC	1 cut(s)	559
Kzo9I	GATC	2 cut(s)	646, 767
LmnI	GCTCC	3 cut(s)	217, 438, 525
Lsp1109I	GCAGC	4 cut(s)	183, 391, 417, 507
LweI	GCATC	3 cut(s)	23, 691, 718
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	648, 769
MbiI	CCGCTC	1 cut(s)	729
MboI	GATC	2 cut(s)	646, 767
MboII	GAAGA	8 cut(s)	90, 93, 96, 99, 102, 143, 556, 762
MfeI	CAATTG	1 cut(s)	780
MflI	RGATCY	1 cut(s)	767
MhlI	GDGCHC	2 cut(s)	315, 795
MluCI	AATT	5 cut(s)	4, 439, 688, 696, 780
Mly113I	GGCGCC	1 cut(s)	628
MlyI	GAGTC	6 cut(s)	221, 269, 401, 579, 602, 751
MreI	CGCCGGCG	1 cut(s)	557
MroNI	GCCGGC	1 cut(s)	557
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	2 cut(s)	174, 403
MspI	CCGG	6 cut(s)	158, 361, 451, 456, 558, 607
MspR9I	CCNGG	4 cut(s)	158, 159, 457, 765
MunI	CAATTG	1 cut(s)	780
MvaI	CCWGG	1 cut(s)	765
MvnI	CGCG	4 cut(s)	238, 582, 668, 789
MwoI	GCNNNNNNNGC	3 cut(s)	293, 361, 501
NaeI	GCCGGC	1 cut(s)	559
NarI	GGCGCC	1 cut(s)	628
NciI	CCSGG	3 cut(s)	158, 159, 457
NdeII	GATC	2 cut(s)	646, 767
NgoMIV	GCCGGC	1 cut(s)	557
NlaIII	CATG	2 cut(s)	319, 514
NlaIV	GGNNCC	3 cut(s)	527, 629, 735
NmeAIII	GCCGAG	2 cut(s)	363, 412
NmuCI	GTSAC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	319
PagI	TCATGA	1 cut(s)	510
PciI	ACATGT	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	558
PdiI	GCCGGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	370
PflMI	CCANNNNNTGG	1 cut(s)	522
PleI	GAGTC	6 cut(s)	221, 268, 401, 579, 601, 750
PluTI	GGCGCC	1 cut(s)	631
PpsI	GAGTC	6 cut(s)	221, 268, 401, 579, 601, 750
PscI	ACATGT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	763
PspFI	CCCAGC	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	3 cut(s)	527, 629, 735
PspPI	GGNCC	4 cut(s)	200, 448, 453, 604
PstNI	CAGNNNCTG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	174
RsaI	GTAC	4 cut(s)	136, 395, 479, 485
RsaNI	GTAC	4 cut(s)	135, 394, 478, 484
Rsr2I	CGGWCCG	1 cut(s)	453
RsrII	CGGWCCG	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	438
Sau3AI	GATC	2 cut(s)	646, 767
Sau96I	GGNCC	4 cut(s)	200, 448, 453, 604
ScaI	AGTACT	1 cut(s)	395
SchI	GAGTC	6 cut(s)	221, 269, 401, 579, 602, 751
ScrFI	CCNGG	4 cut(s)	158, 159, 457, 765
SduI	GDGCHC	2 cut(s)	315, 795
SfaNI	GCATC	3 cut(s)	23, 691, 718
SfcI	CTRYAG	1 cut(s)	814
SfoI	GGCGCC	1 cut(s)	629
SgrAI	CRCCGGYG	1 cut(s)	557
SinI	GGWCC	4 cut(s)	200, 448, 453, 604
SmaI	CCCGGG	1 cut(s)	159
Sse9I	AATT	5 cut(s)	4, 439, 688, 696, 780
SspDI	GGCGCC	1 cut(s)	627
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	4 cut(s)	156, 157, 455, 763
TaaI	ACNGT	1 cut(s)	292
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	4 cut(s)	263, 321, 444, 552
TasI	AATT	5 cut(s)	4, 439, 688, 696, 780
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	7 cut(s)	192, 195, 238, 299, 633, 644, 760
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	4 cut(s)	171, 379, 430, 495
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	6 cut(s)	17, 63, 285, 662, 818, 824
TspMI	CCCGGG	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	522
VpaK11BI	GGWCC	4 cut(s)	200, 448, 453, 604
XapI	RAATTY	2 cut(s)	4, 696
XbaI	TCTAGA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	319
XmaI	CCCGGG	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	395
XspI	CTAG	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.