AT2G47480

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0018324
Physical Location & Seq
Reverse (-)
19483919 .. 19484710
792 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G47480.1

Sequence Viewer

Length: 333 bp
ATGGATAGTCACGATGGATGTGGGTACGGGTCGGGTCAGAGAACTTACGGCGTTGATCGGAGGAAGGAAATCGTGAGTGGTAAGAGAAATCAGATCTACGGGACTCGGGATTATCCTCCGTCACTGCCGCCTCCGCCGGGAAAAGTAGCGGCGGGAAGGAGCAACGCGTCGTCGTCTTTGCGAATCGGAGGTTTAAGCGATGCGGAGATGAAGAGGAAGAAGAGAATCGCGAGGTATAAAGCTTATACAGTTGAAGGTAAAGTTAAATCGACTTTGAAGAATGGATTCCGATGGATTAAAAACAAATGCTGTCAGATTGTCCATCGTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

110

Amino Acids

12.29

Weight (kDa)

10.29

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 66 - 109 3.6e-26 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47480 AT3G62640
fragaria_vesca FvH4_4g19290
prunus_persica Prupe.1G125500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0424301
rosa_laevigata RLG00000007488
rosa_roxburghii Rroxscaffold_5G00366260
rosa_samantha Rh4CG268700 Rh4DG252300
rosa_wichuraiana Rw4G021780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 167, 230
AciI CCGC 5 cut(s) 128, 134, 149, 152, 203
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 2 cut(s) 254, 277
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
Ama87I CYCGRG 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 284
AsuC2I CCSGG 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 105
BccI CCATC 3 cut(s) 8, 285, 330
BceAI ACGGC 1 cut(s) 64
BcnI CCSGG 1 cut(s) 138
BglII AGATCT 1 cut(s) 93
BisI GCNGC 2 cut(s) 128, 150
BlsI GCNGC 2 cut(s) 129, 151
Bme1390I CCNGG 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 190
BpuMI CCSGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 137
Bsh1236I CGCG 2 cut(s) 167, 230
BsiHKCI CYCGRG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 105
Bsp143I GATC 2 cut(s) 55, 93
Bsp68I TCGCGA 1 cut(s) 230
BspACI CCGC 5 cut(s) 128, 134, 149, 152, 203
BspFNI CGCG 2 cut(s) 167, 230
BssMI GATC 2 cut(s) 55, 93
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 2 cut(s) 206, 215
BstF5I GGATG 1 cut(s) 23
BstFNI CGCG 2 cut(s) 167, 230
BstKTI GATC 2 cut(s) 58, 96
BstMBI GATC 2 cut(s) 55, 93
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 2 cut(s) 167, 230
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 1 cut(s) 23
BtsI GCAGTG 1 cut(s) 122
BtsIMutI CAGTG 1 cut(s) 122
BtuMI TCGCGA 1 cut(s) 230
CseI GACGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 25
CviJI RGCY 1 cut(s) 242
CviKI_1 RGCY 1 cut(s) 242
CviQI GTAC 1 cut(s) 25
DpnI GATC 2 cut(s) 57, 95
DpnII GATC 2 cut(s) 55, 93
Eam1104I CTCTTC 2 cut(s) 206, 215
EarI CTCTTC 2 cut(s) 206, 215
EciI GGCGGA 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 105
FaiI YATR 2 cut(s) 237, 246
FaqI GGGAC 1 cut(s) 115
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 128, 150
FokI GGATG 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 128, 150
GluI GCNGC 2 cut(s) 128, 150
HapII CCGG 1 cut(s) 137
HgaI GACGC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 4 cut(s) 103, 183, 225, 285
HpaII CCGG 1 cut(s) 137
Hpy188I TCNGA 7 cut(s) 39, 60, 93, 188, 290, 315, 332
Hpy188III TCNNGA 4 cut(s) 11, 73, 107, 229
Hpy99I CGWCG 2 cut(s) 172, 175
HpyAV CCTTC 3 cut(s) 58, 150, 248
HpyCH4III ACNGT 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
Kzo9I GATC 2 cut(s) 55, 93
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 1 cut(s) 150
LweI GCATC 1 cut(s) 190
MaeIII GTNAC 2 cut(s) 8, 120
MalI GATC 2 cut(s) 57, 95
MboI GATC 2 cut(s) 55, 93
MboII GAAGA 4 cut(s) 223, 229, 232, 289
MflI RGATCY 1 cut(s) 93
MluI ACGCGT 1 cut(s) 165
MlyI GAGTC 1 cut(s) 97
MnlI CCTC 6 cut(s) 54, 126, 141, 182, 207, 225
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 3 cut(s) 194, 264, 297
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 138
MvnI CGCG 2 cut(s) 167, 230
MwoI GCNNNNNNNGC 1 cut(s) 133
NciI CCSGG 1 cut(s) 138
NdeII GATC 2 cut(s) 55, 93
NmuCI GTSAC 2 cut(s) 8, 120
NruI TCGCGA 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 3 cut(s) 183, 225, 285
PkrI GCNGC 2 cut(s) 129, 151
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PsuI RGATCY 1 cut(s) 93
RruI TCGCGA 1 cut(s) 230
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SaqAI TTAA 3 cut(s) 194, 264, 297
SatI GCNGC 2 cut(s) 128, 150
Sau3AI GATC 2 cut(s) 55, 93
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 138
SetI ASST 4 cut(s) 193, 236, 244, 259
SfaNI GCATC 1 cut(s) 190
SsiI CCGC 5 cut(s) 128, 134, 149, 152, 203
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 269
TauI GCSGC 2 cut(s) 130, 152
TfiI GAWTC 3 cut(s) 183, 225, 285
Tru1I TTAA 3 cut(s) 194, 264, 297
Tru9I TTAA 3 cut(s) 194, 264, 297
TscAI CASTG 1 cut(s) 129
TseFI GTSAC 2 cut(s) 8, 120
Tsp45I GTSAC 2 cut(s) 8, 120
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.