Rh4CG268700

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0018324
Physical Location & Seq
Forward (+)
52323581 .. 52324565
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG268700.1

Sequence Viewer

Length: 486 bp
ATGGAACACAAACGCTCTTTGATTCTCAATCTAATTTGTTCTATCCTCGTCACATCCTCGCAAAGACCAGCGCTATTTAATCTATTGCCTAATTTGAACAGCTCGAGTTCCTCTATAAAATCATTTCCAAGTTTTTTTTTTCTCTCCCATGTCTTGACGAGTATCTATCTTTTTGTTCCTCTCTCTCTCTCTCATTTGCTCGTCAACCTTAACCGGCCGGCGAGAATGATGAGAGAGATGGACGATATCTCGTCAGCATACGGATCATCACCTTATGGTGATGTTAGCCACCAAAATGAGGCTTATGCGTGGGAAAGCAATAAAGAGTATTCACGCAAAACGTCGTCTTTAAGCTTCAAAAATTCAGAGATCAAGAGACAACGTCGAGTGGCCAAATACAAGTCATATTGTGTCCAAACCAAATTGAAGAGTGCCATAAAGAATGGGGTTCGTTGGTTTAGAAACAAGTATTCTTCGGTCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

161

Amino Acids

18.5

Weight (kDa)

10.09

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 120 - 161 1.4e-14 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47480 AT3G62640
fragaria_vesca FvH4_4g19290
prunus_persica Prupe.1G125500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0424301
rosa_laevigata RLG00000007488
rosa_roxburghii Rroxscaffold_5G00366260
rosa_samantha Rh4CG268700 Rh4DG252300
rosa_wichuraiana Rw4G021780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 271
AcoI YGGCCR 2 cut(s) 215, 390
AcsI RAATTY 1 cut(s) 361
AfeI AGCGCT 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 298
AgsI TTSAA 3 cut(s) 97, 358, 427
AluBI AGCT 2 cut(s) 102, 354
AluI AGCT 2 cut(s) 102, 354
Alw26I GTCTC 1 cut(s) 370
AlwI GGATC 1 cut(s) 271
Ama87I CYCGRG 1 cut(s) 103
Aor51HI AGCGCT 1 cut(s) 72
AoxI GGCC 2 cut(s) 215, 390
ApoI RAATTY 1 cut(s) 361
AspLEI GCGC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 261, 290
AvaI CYCGRG 1 cut(s) 103
BalI TGGCCA 1 cut(s) 392
BccI CCATC 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 370
BfoI RGCGCY 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse118I RCCGGY 2 cut(s) 213, 217
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 298
BseX3I CGGCCG 1 cut(s) 215
Bsh1285I CGRYCG 2 cut(s) 218, 480
BshFI GGCC 2 cut(s) 217, 392
BsiEI CGRYCG 2 cut(s) 218, 480
BsiHKCI CYCGRG 1 cut(s) 103
BsiSI CCGG 2 cut(s) 214, 218
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 370
BsnI GGCC 2 cut(s) 217, 392
BsoBI CYCGRG 1 cut(s) 103
Bsp143I GATC 2 cut(s) 263, 369
BspANI GGCC 2 cut(s) 217, 392
BspPI GGATC 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 213, 217
BssAI RCCGGY 2 cut(s) 213, 217
BssMI GATC 2 cut(s) 263, 369
Bst6I CTCTTC 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 219
BstF5I GGATG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 74
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 2 cut(s) 266, 372
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 2 cut(s) 263, 369
BstMCI CGRYCG 2 cut(s) 218, 480
BstZI CGGCCG 1 cut(s) 215
BsuRI GGCC 2 cut(s) 217, 392
BtsCI GGATG 1 cut(s) 53
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 2 cut(s) 213, 217
CviAII CATG 1 cut(s) 149
CviJI RGCY 6 cut(s) 102, 217, 288, 302, 354, 392
CviKI_1 RGCY 6 cut(s) 102, 217, 288, 302, 354, 392
DpnI GATC 2 cut(s) 265, 371
DpnII GATC 2 cut(s) 263, 369
EaeI YGGCCR 2 cut(s) 215, 390
EagI CGGCCG 1 cut(s) 215
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EclXI CGGCCG 1 cut(s) 215
Eco32I GATATC 1 cut(s) 247
Eco47III AGCGCT 1 cut(s) 72
Eco52I CGGCCG 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 103
EcoRV GATATC 1 cut(s) 247
FaeI CATG 1 cut(s) 152
FaiI YATR 7 cut(s) 116, 150, 259, 276, 306, 406, 437
FatI CATG 1 cut(s) 148
FokI GGATG 1 cut(s) 40
GlaI GCGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 74
HaeIII GGCC 2 cut(s) 217, 392
HapII CCGG 2 cut(s) 214, 218
HhaI GCGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 152
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 1 cut(s) 22
HpaII CCGG 2 cut(s) 214, 218
HphI GGTGA 2 cut(s) 261, 290
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 367
Hpy188III TCNNGA 2 cut(s) 154, 373
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 2 cut(s) 346, 387
HpyCH4IV ACGT 2 cut(s) 341, 382
HpySE526I ACGT 2 cut(s) 341, 382
Hsp92II CATG 1 cut(s) 152
HspAI GCGC 1 cut(s) 71
KroI GCCGGC 1 cut(s) 217
KroNI GCCGGC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 263, 369
LpnPI CCDG 3 cut(s) 81, 227, 231
MaeII ACGT 2 cut(s) 341, 382
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 265, 371
MboI GATC 2 cut(s) 263, 369
MboII GAAGA 2 cut(s) 439, 465
MlsI TGGCCA 1 cut(s) 392
MluCI AATT 4 cut(s) 33, 91, 361, 422
MluNI TGGCCA 1 cut(s) 392
MnlI CCTC 5 cut(s) 56, 67, 121, 189, 292
Mox20I TGGCCA 1 cut(s) 392
MroNI GCCGGC 1 cut(s) 217
MscI TGGCCA 1 cut(s) 392
MseI TTAA 4 cut(s) 78, 210, 350, 484
MslI CAYNNNNRTG 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 392
MspI CCGG 2 cut(s) 214, 218
NaeI GCCGGC 1 cut(s) 219
NdeII GATC 2 cut(s) 263, 369
NgoMIV GCCGGC 1 cut(s) 217
NlaIII CATG 1 cut(s) 152
NmuCI GTSAC 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 103
PdiI GCCGGC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 22
PflFI GACNNNGTC 1 cut(s) 381
PspXI VCTCGAGB 1 cut(s) 103
PsyI GACNNNGTC 1 cut(s) 381
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 4 cut(s) 78, 210, 350, 484
Sau3AI GATC 2 cut(s) 263, 369
SetI ASST 6 cut(s) 104, 210, 274, 344, 356, 385
Sfr274I CTCGAG 1 cut(s) 103
SlaI CTCGAG 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 4 cut(s) 33, 91, 361, 422
TaiI ACGT 2 cut(s) 344, 385
TaqI TCGA 2 cut(s) 104, 385
TaqII GACCGA 1 cut(s) 466
TasI AATT 4 cut(s) 33, 91, 361, 422
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 4 cut(s) 78, 210, 350, 484
Tru9I TTAA 4 cut(s) 78, 210, 350, 484
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 276
Tth111I GACNNNGTC 1 cut(s) 381
XapI RAATTY 1 cut(s) 361
XhoI CTCGAG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.