RLG00000007488

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018324
Physical Location & Seq
Reverse (-)
17443296 .. 17444876
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007488

Sequence Viewer

Length: 315 bp
ATGGACGATATCTCGTCAGCATACGGATCATCACCTTATGGTGATGTTAGCCACCAAAATGAGGCTTATGCCTGGGAAAGCAATAAAGAATATTCACGCAAAACGTCGTCTTTAAGCTTCAAAAATTCAGAGATCAAGAGACAACGTCGAGTGGCCAAATACAAGTCATATTGTGTCCAAACCAAATTGAAGAGTGCCATAAAGAATGGGAGCAGTACTGCCGTCATCATCTTCGTCCTCGGCGACGGAGCCACTCTCCACGGGCTGCTCACCTCCGTCGACATCGCCACCACAATGACGTTGACAATCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.43

Weight (kDa)

9.27

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 41 - 70 7.6e-10 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018324)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47480 AT3G62640
fragaria_vesca FvH4_4g19290
prunus_persica Prupe.1G125500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0424301
rosa_laevigata RLG00000007488
rosa_roxburghii Rroxscaffold_5G00366260
rosa_samantha Rh4CG268700 Rh4DG252300
rosa_wichuraiana Rw4G021780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 279
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 153
AcsI RAATTY 1 cut(s) 124
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 2 cut(s) 121, 190
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 1 cut(s) 117
AluI AGCT 1 cut(s) 117
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 34
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 124
AsuHPI GGTGA 3 cut(s) 24, 53, 262
BalI TGGCCA 1 cut(s) 155
BbvI GCAGC 1 cut(s) 252
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 133
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
BmcAI AGTACT 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 73
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BsaJI CCNNGG 3 cut(s) 72, 238, 259
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 3 cut(s) 72, 238, 259
BseLI CCNNNNNNNGG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 26, 132
BspANI GGCC 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 72, 238, 259
BssMI GATC 2 cut(s) 26, 132
Bst2UI CCWGG 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 185
BstDSI CCRYGG 1 cut(s) 259
BstKTI GATC 2 cut(s) 29, 135
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 26, 132
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 252
BsuRI GGCC 1 cut(s) 155
BtgI CCRYGG 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 268
Csp6I GTAC 1 cut(s) 216
CviJI RGCY 6 cut(s) 51, 65, 117, 155, 251, 265
CviKI_1 RGCY 6 cut(s) 51, 65, 117, 155, 251, 265
CviQI GTAC 1 cut(s) 216
DpnI GATC 2 cut(s) 28, 134
DpnII GATC 2 cut(s) 26, 132
EaeI YGGCCR 1 cut(s) 153
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco32I GATATC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 71
EcoRV GATATC 1 cut(s) 10
FaiI YATR 5 cut(s) 22, 39, 69, 169, 200
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 266
Fsp4HI GCNGC 1 cut(s) 266
GluI GCNGC 1 cut(s) 266
HaeIII GGCC 1 cut(s) 155
HincII GTYRAC 2 cut(s) 280, 303
HindII GTYRAC 2 cut(s) 280, 303
HindIII AAGCTT 1 cut(s) 115
HphI GGTGA 3 cut(s) 24, 53, 262
Hpy166II GTNNAC 2 cut(s) 280, 303
Hpy188I TCNGA 2 cut(s) 130, 314
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 2 cut(s) 280, 303
Hpy99I CGWCG 4 cut(s) 109, 150, 248, 281
HpyCH4IV ACGT 3 cut(s) 104, 145, 299
HpySE526I ACGT 3 cut(s) 104, 145, 299
Kzo9I GATC 2 cut(s) 26, 132
LmnI GCTCC 2 cut(s) 210, 248
LpnPI CCDG 2 cut(s) 58, 85
Lsp1109I GCAGC 1 cut(s) 252
MaeII ACGT 3 cut(s) 104, 145, 299
MalI GATC 2 cut(s) 28, 134
MboI GATC 2 cut(s) 26, 132
MboII GAAGA 2 cut(s) 202, 223
MlsI TGGCCA 1 cut(s) 155
MluCI AATT 2 cut(s) 124, 185
MluNI TGGCCA 1 cut(s) 155
MnlI CCTC 3 cut(s) 55, 248, 283
Mox20I TGGCCA 1 cut(s) 155
MscI TGGCCA 1 cut(s) 155
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 2 cut(s) 57, 293
Msp20I TGGCCA 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
NdeII GATC 2 cut(s) 26, 132
NlaIV GGNNCC 1 cut(s) 250
NmeAIII GCCGAG 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PflFI GACNNNGTC 1 cut(s) 144
PkrI GCNGC 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 250
PsyI GACNNNGTC 1 cut(s) 144
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
RseI CAYNNNNRTG 2 cut(s) 57, 293
SalI GTCGAC 1 cut(s) 278
SaqAI TTAA 1 cut(s) 113
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 2 cut(s) 26, 132
ScaI AGTACT 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 73
SetI ASST 6 cut(s) 37, 107, 119, 148, 275, 302
SmiMI CAYNNNNRTG 2 cut(s) 57, 293
Sse9I AATT 2 cut(s) 124, 185
SspI AATATT 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 71
TaiI ACGT 3 cut(s) 107, 148, 302
TaqI TCGA 2 cut(s) 148, 279
TasI AATT 2 cut(s) 124, 185
TatI WGTACW 1 cut(s) 215
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TseI GCWGC 1 cut(s) 265
TspGWI ACGGA 3 cut(s) 39, 261, 265
Tth111I GACNNNGTC 1 cut(s) 144
XapI RAATTY 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 279
ZrmI AGTACT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.