Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013947

Physical Location & Seq

Genomic Coordinates Reverse (-)

216805 .. 219136

Gene Structure 2332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G01550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGTTCGCTCTCACATTTCTAAATCCAAATCCAAGACTTCCATCTCCATTGTTCCTTGCCAAGTCTACTCCTGAATCAGCGTTGAGCAGAAGAAGCAGAGCTTTTTCATCTTCTAACTCTTATCCTTGGAGACCGAACCTTAGATTTAATGGCTTCAAGCTCAAGTCAGCTACAGTTCCGGAGAATGTGGAAGGAGGAGATTTGGAATCTGGAAGTTTGGTTAAAGGGTTGAAGCTAGGAGGCATGTTTGGAGTTTGGTACCTTCTCAATATCTACTACAACATTTTCAACAAACAGGTACTTAGGGTTTATCCATATCCAGCGACTGTAACAGCATTTCAATTAGGGTGTGGAACGTTGATGATTGCTATAATGTGGCTCCTTAAACTCCATCCACGCCCCAAATTTTCTCCTTCTCAGTTTACGGTGATCGTACAACTAGCAGTAGCTCACACGTTAGGGAACTTGTTAACAAATGTGAGCTTAGGAAGAGTAAATGTCTCTTTCACCCACACTATCAAAGCAATGGAGCCTTTCTTCACCGTCTTGCTTTCTGTTCTCTTGCTCGGTGAGTGGCCGAGTCTGTGGATTGTTTGTTCGTTGTTACCTATTGTCGCTGGAGTCTCTTTAGCATCTTTCACAGAAGCTTCTTTCAATTGGATTGGTTTCTGCAGTGCAATGGCTTCTAATGTGACGAATCAATCACGCAATGTCCTCAGTAAAAAATTCATGGTTGGAAAGGACGCTTTGGACAACATCAACCTTTTCTCTATAATAACCATTATCTCCTTTATCTTACTGGTTCCTTTAGCAATCCTCATCGATGGGTTCAAGGTTACTCCTTCGCATTTACAAGTAGCAACAAGCCAGGGTTTGTCGGTAAAAGAGTTTTGCATCATGTCTCTACTTGCTGGTGTTTGCTTGCATAGCTACCAACAGGTATCGTATATGATATTGGAGATGGTGTCTCCAGTAACACACTCTGTAGGGAACTGCGTGAAGCGTGTGGTGGTTATTACATCATCCATTCTTTTCTTCAAAACTCCAGTCTCACCTCTTAACTCTATAGGTACCGCGACTGCACTAGCTGGAGTATATTTGTACAGCAGAGCCAAACGAGTCCAAGTCAAACCAAATCCAAAAATGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0008643 GO:0015075 GO:0015120 GO:0015121 GO:0015144 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015713 GO:0015714 GO:0015718 GO:0015748 GO:0015849 GO:0022804 GO:0022857 GO:0034219 GO:0034220 GO:0042873 GO:0042879 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1901505 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

383

Amino Acids

42.05

Weight (kDa)

9.89

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	77 - 364	3.7e-116	Triose-phosphate Transporter family
EamA	PF00892	93 - 212	9.1e-14	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01550 AT3G01550
fragaria_vesca	FvH4_6g51010 FvH4_6g51010
malus_domestica	MD09G1029600.v1.1
prunus_persica	Prupe.3G287800_v2.0.a1 Prupe.3G287800_v2.0.a1
pyrus_communis	pycom111g02360
rosa_chinensis	RchiOBHm_Chr2g0172541
rosa_laevigata	RLG00000022114
rosa_multiflora	Rmu_sc0000912.1_g000007
rosa_rugosa	Rorug02G0559700.1
rosa_samantha	Rh2AG635800 Rh2BG649200 Rh2CG616000 Rh2DG663600
rosa_wichuraiana	Rw2G052600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	258, 1070
AccB1I	GGYRCC	2 cut(s)	258, 1070
AccI	GTMKAC	1 cut(s)	65
AccII	CGCG	1 cut(s)	1076
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	1 cut(s)	1074
AclI	AACGTT	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	575
AcsI	RAATTY	2 cut(s)	404, 725
AfaI	GTAC	5 cut(s)	260, 300, 435, 1072, 1103
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	7 cut(s)	157, 232, 289, 341, 655, 832, 1039
AjnI	CCWGG	1 cut(s)	867
AloI	GAACNNNNNNTCC	2 cut(s)	580, 612
AluBI	AGCT	9 cut(s)	101, 160, 170, 235, 449, 483, 647, 930, 1088
AluI	AGCT	9 cut(s)	101, 160, 170, 235, 449, 483, 647, 930, 1088
Alw26I	GTCTC	6 cut(s)	124, 505, 628, 906, 972, 1054
AlwNI	CAGNNNCTG	1 cut(s)	326
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	1 cut(s)	575
ApoI	RAATTY	2 cut(s)	404, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	1032, 1064
Asp718I	GGTACC	2 cut(s)	258, 1070
AsuHPI	GGTGA	5 cut(s)	439, 499, 532, 581, 1044
BanI	GGYRCC	2 cut(s)	258, 1070
BccI	CCATC	4 cut(s)	49, 399, 818, 955
BciT130I	CCWGG	1 cut(s)	869
BcoDI	GTCTC	6 cut(s)	124, 505, 628, 906, 972, 1054
BfaI	CTAG	3 cut(s)	236, 440, 1085
BfmI	CTRYAG	4 cut(s)	171, 670, 984, 1065
Bme1390I	CCNGG	1 cut(s)	869
BmiI	GGNNCC	5 cut(s)	260, 380, 531, 804, 1072
BmrFI	CCNGG	1 cut(s)	869
BmsI	GCATC	2 cut(s)	641, 903
BpmI	CTGGAG	4 cut(s)	639, 954, 1029, 1110
Bpu10I	CCTNAGC	1 cut(s)	484
BpuEI	CTTGAG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	822
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	125, 868
BsaWI	WCCGGW	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	950, 980
Bse1I	ACTGG	3 cut(s)	804, 971, 1046
Bse3DI	GCAATG	3 cut(s)	531, 684, 715
BseAI	TCCGGA	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	869
BseCI	ATCGAT	1 cut(s)	822
BseDI	CCNNGG	2 cut(s)	125, 868
BseGI	GGATG	2 cut(s)	391, 1022
BseMI	GCAATG	3 cut(s)	531, 684, 715
BseMII	CTCAG	2 cut(s)	431, 730
BseNI	ACTGG	3 cut(s)	804, 971, 1046
BseRI	GAGGAG	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	1065
Bsh1236I	CGCG	1 cut(s)	1076
BshFI	GGCC	1 cut(s)	577
BshNI	GGYRCC	2 cut(s)	258, 1070
BshVI	ATCGAT	1 cut(s)	822
BsiSI	CCGG	1 cut(s)	179
BsmAI	GTCTC	6 cut(s)	124, 505, 628, 906, 972, 1054
BsnI	GGCC	1 cut(s)	577
Bso31I	GGTCTC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	1101
Bsp143I	GATC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	1074
BspANI	GGCC	1 cut(s)	577
BspCNI	CTCAG	2 cut(s)	430, 729
BspDI	ATCGAT	1 cut(s)	822
BspEI	TCCGGA	1 cut(s)	178
BspFNI	CGCG	1 cut(s)	1076
BspLI	GGNNCC	5 cut(s)	260, 380, 531, 804, 1072
BspMAI	CTGCAG	1 cut(s)	674
BspT107I	GGYRCC	2 cut(s)	258, 1070
BspTNI	GGTCTC	1 cut(s)	124
BsrDI	GCAATG	3 cut(s)	531, 684, 715
BsrGI	TGTACA	1 cut(s)	1101
BsrI	ACTGG	3 cut(s)	804, 971, 1046
BssECI	CCNNGG	2 cut(s)	125, 868
BssMI	GATC	1 cut(s)	429
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	869
Bst4CI	ACNGT	4 cut(s)	175, 328, 427, 544
Bst6I	CTCTTC	1 cut(s)	484
BstAUI	TGTACA	1 cut(s)	1101
BstC8I	GCNNGC	1 cut(s)	923
BstDEI	CTNAG	5 cut(s)	140, 302, 417, 484, 716
BstF5I	GGATG	2 cut(s)	391, 1022
BstFNI	CGCG	1 cut(s)	1076
BstKTI	GATC	1 cut(s)	432
BstMAI	GTCTC	6 cut(s)	124, 505, 628, 906, 972, 1054
BstMBI	GATC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 927
BstNI	CCWGG	1 cut(s)	869
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	867
BstSFI	CTRYAG	4 cut(s)	171, 670, 984, 1065
BstUI	CGCG	1 cut(s)	1076
Bsu15I	ATCGAT	1 cut(s)	822
BsuRI	GGCC	1 cut(s)	577
BsuTUI	ATCGAT	1 cut(s)	822
BtsCI	GGATG	2 cut(s)	391, 1022
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	1 cut(s)	923
CaiI	CAGNNNCTG	1 cut(s)	326
ClaI	ATCGAT	1 cut(s)	822
CseI	GACGC	1 cut(s)	752
Csp6I	GTAC	5 cut(s)	259, 299, 434, 1071, 1102
CviAII	CATG	3 cut(s)	244, 730, 898
CviQI	GTAC	5 cut(s)	259, 299, 434, 1071, 1102
DdeI	CTNAG	5 cut(s)	140, 302, 417, 484, 716
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
EaeI	YGGCCR	1 cut(s)	575
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	125
Eco31I	GGTCTC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	867
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	3 cut(s)	247, 733, 901
FalI	AAGNNNNNCTT	2 cut(s)	85, 117
FatI	CATG	3 cut(s)	243, 729, 897
FblI	GTMKAC	1 cut(s)	65
FokI	GGATG	2 cut(s)	378, 1009
FspBI	CTAG	3 cut(s)	236, 440, 1085
GsuI	CTGGAG	4 cut(s)	639, 954, 1029, 1110
HaeIII	GGCC	1 cut(s)	577
HapII	CCGG	1 cut(s)	179
HgaI	GACGC	1 cut(s)	752
Hin1II	CATG	3 cut(s)	247, 733, 901
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	6 cut(s)	74, 206, 580, 621, 697, 1119
HpaI	GTTAAC	1 cut(s)	471
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	5 cut(s)	439, 499, 532, 581, 1044
Hpy166II	GTNNAC	3 cut(s)	66, 423, 471
Hpy188III	TCNNGA	4 cut(s)	71, 179, 210, 1149
Hpy8I	GTNNAC	3 cut(s)	66, 423, 471
HpyAV	CCTTC	4 cut(s)	185, 272, 423, 852
HpyCH4III	ACNGT	4 cut(s)	175, 328, 427, 544
HpyCH4IV	ACGT	2 cut(s)	356, 455
HpyCH4V	TGCA	5 cut(s)	672, 677, 894, 925, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 927
HpyF3I	CTNAG	5 cut(s)	140, 302, 417, 484, 716
HpySE526I	ACGT	2 cut(s)	356, 455
Hsp92II	CATG	3 cut(s)	247, 733, 901
Kpn2I	TCCGGA	1 cut(s)	178
KpnI	GGTACC	2 cut(s)	262, 1074
KspAI	GTTAAC	1 cut(s)	471
Kzo9I	GATC	1 cut(s)	429
LmnI	GCTCC	2 cut(s)	384, 529
LweI	GCATC	2 cut(s)	641, 903
MaeI	CTAG	3 cut(s)	236, 440, 1085
MaeII	ACGT	2 cut(s)	356, 455
MaeIII	GTNAC	5 cut(s)	328, 603, 691, 835, 973
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	5 cut(s)	102, 102, 501, 529, 1027
MfeI	CAATTG	1 cut(s)	655
MluCI	AATT	4 cut(s)	341, 404, 655, 725
MlyI	GAGTC	3 cut(s)	589, 630, 1128
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	5 cut(s)	188, 233, 725, 827, 1065
MroI	TCCGGA	1 cut(s)	178
MseI	TTAA	5 cut(s)	147, 222, 384, 470, 1059
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	869
MunI	CAATTG	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	869
MvnI	CGCG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	2 cut(s)	93, 927
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	3 cut(s)	247, 733, 901
NlaIV	GGNNCC	5 cut(s)	260, 380, 531, 804, 1072
NmeAIII	GCCGAG	1 cut(s)	603
NmuCI	GTSAC	1 cut(s)	691
NspI	RCATGY	1 cut(s)	247
PfeI	GAWTC	3 cut(s)	74, 206, 697
PleI	GAGTC	3 cut(s)	588, 629, 1127
PpsI	GAGTC	3 cut(s)	588, 629, 1127
Psp1406I	AACGTT	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	867
PspGI	CCWGG	1 cut(s)	867
PspN4I	GGNNCC	5 cut(s)	260, 380, 531, 804, 1072
PstI	CTGCAG	1 cut(s)	674
PstNI	CAGNNNCTG	1 cut(s)	326
RsaI	GTAC	5 cut(s)	260, 300, 435, 1072, 1103
RsaNI	GTAC	5 cut(s)	259, 299, 434, 1071, 1102
SaqAI	TTAA	5 cut(s)	147, 222, 384, 470, 1059
Sau3AI	GATC	1 cut(s)	429
SchI	GAGTC	3 cut(s)	589, 630, 1128
ScrFI	CCNGG	1 cut(s)	869
SfaNI	GCATC	2 cut(s)	641, 903
SfcI	CTRYAG	4 cut(s)	171, 670, 984, 1065
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	4 cut(s)	341, 404, 655, 725
SsiI	CCGC	1 cut(s)	1074
SspMI	CTAG	3 cut(s)	236, 440, 1085
StyD4I	CCNGG	1 cut(s)	867
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	4 cut(s)	175, 328, 427, 544
TaiI	ACGT	2 cut(s)	359, 458
TaqI	TCGA	1 cut(s)	822
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	4 cut(s)	341, 404, 655, 725
TatI	WGTACW	1 cut(s)	1101
TfiI	GAWTC	3 cut(s)	74, 206, 697
Tru1I	TTAA	5 cut(s)	147, 222, 384, 470, 1059
Tru9I	TTAA	5 cut(s)	147, 222, 384, 470, 1059
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	1 cut(s)	691
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	2 cut(s)	96, 718
TspRI	CASTG	1 cut(s)	679
XapI	RAATTY	2 cut(s)	404, 725
XceI	RCATGY	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	65
XspI	CTAG	3 cut(s)	236, 440, 1085

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.