Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013947

Physical Location & Seq

Genomic Coordinates Forward (+)

1819068 .. 1822008

Gene Structure 2941 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1029600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCAGAGCACTGCGCTTGCTCTGGCTCCTTCCACCTCGTTTCTCAAACCTCCGGGTCGAAAATCTATCCCTAAAGCCACTCAGCTTTCAACCTTGACGTCCTTGATACAAGACAGTTTGACTAAAGTTCACAGGCTTTCATGGCAAACACCTCTTTACACGTTTTCTTCTTCCAATGCTTCCTTCCTTTTCTCAAATCACAGATATGATCATTTGAAGGTCAGGGCTGCTTCTGTTCCCGGGAGTGCTGACGAGGCCTCGAAACAGAGCGAGCTGGTTAAGACCTTTCAGCTTGGTTCAATGTTTGGAATTTGGTACCTTTTGAATATTTACTTCAACATCTACAACAAACAGGTTCTGAAAGTCTATCCATTTCCAGCAACGGTCACAGCGTTTCAGTTCGGCTGCGGGACTGTGATGATTATCCTGATGTGGGCTCTTAACCTCCACCCCAGACCAAAACTCACTCGCTCACAGCTTGCAGCAATTCTTCCACTGGCAGTGGCACACACAATGGGGAACTTATTGACTAACGTTAGTCTTGGGAAAGTTGCTGTTTCTTTCACTCACACAATCAAAGCTATGGAGCCGTTCTTCACAGTTGTATTCTCTGCTCTTTTGCTTGCGGAGATGCCGAATATTTGGGTTGTTGCTTCTCTTGTACCAATTGTAGGCGGAGTGGCATTGGTATCCTTCACCGAGGCCTCTTTTAACTGGATTGGTTTTGGTAGTGCAATGGCCTCTAATGTTACGAACCAATCACGTAATGTACTCAGCAAGAAGTTCATGGTTAAGAAAGAGGAATCTTTGGACAATATCAATCTCTTCTCAGTGATAACTATCATTTCCTTCATCCTGTTGGTTCCTTCGGCAATCCTCTTGGAAGGCGTTAAATTTACTCCTGCATACCTGCAGTCTGCTGCAAACCAAGGATTGAACATCAAAGAGTTATGCGTGAGATCACTTCTGGCTGGCTTCTGCTTCCACACTTACCAGCAGGTGTCCTATATGATACTGCAGATGGTTTCACCGGTGACTCACGCAGTCGGGAACTGTGTGAAGCGTGTGGTGGTGATAGTCTCCTCAGTCATCTTCTTCCAAACACCCGTCTCACCGATAAACTCCCTCGGGACTGCTATTGCTCTTGCTGGAGTGTTCTTGTATTCAAGAGCCAAGAGAACAAAGCCAAAGCCCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009670 GO:0015075 GO:0015121 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022804 GO:0022857 GO:0034220 GO:0035436 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

400

Amino Acids

43.67

Weight (kDa)

9.96

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	97 - 389	7.3e-122	Triose-phosphate Transporter family
EamA	PF00892	115 - 231	4.6e-12	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01550 AT3G01550
fragaria_vesca	FvH4_6g51010 FvH4_6g51010
malus_domestica	MD09G1029600.v1.1
prunus_persica	Prupe.3G287800_v2.0.a1 Prupe.3G287800_v2.0.a1
pyrus_communis	pycom111g02360
rosa_chinensis	RchiOBHm_Chr2g0172541
rosa_laevigata	RLG00000022114
rosa_multiflora	Rmu_sc0000912.1_g000007
rosa_rugosa	Rorug02G0559700.1
rosa_samantha	Rh2AG635800 Rh2BG649200 Rh2CG616000 Rh2DG663600
rosa_wichuraiana	Rw2G052600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	988
AatII	GACGTC	1 cut(s)	101
Acc36I	ACCTGC	2 cut(s)	918, 988
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	315
AciI	CCGC	3 cut(s)	408, 626, 675
AclI	AACGTT	1 cut(s)	534
AcsI	RAATTY	2 cut(s)	309, 893
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	3 cut(s)	317, 663, 771
AfiI	CCNNNNNNNGG	2 cut(s)	433, 671
AflIII	ACRYGT	1 cut(s)	159
AgeI	ACCGGT	1 cut(s)	1030
AgsI	TTSAA	7 cut(s)	90, 217, 300, 325, 337, 937, 1167
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	5 cut(s)	85, 274, 292, 478, 581
AluI	AGCT	5 cut(s)	85, 274, 292, 478, 581
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	1084, 1114
AlwNI	CAGNNNCTG	1 cut(s)	358
Ama87I	CYCGRG	2 cut(s)	239, 1127
AoxI	GGCC	3 cut(s)	255, 702, 738
ApeKI	GCWGC	4 cut(s)	227, 405, 482, 920
ApoI	RAATTY	2 cut(s)	309, 893
AsiGI	ACCGGT	1 cut(s)	1030
Asp718I	GGTACC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	16
AsuC2I	CCSGG	3 cut(s)	54, 240, 241
AsuHPI	GGTGA	5 cut(s)	688, 1020, 1045, 1084, 1104
AvaI	CYCGRG	2 cut(s)	239, 1127
BanI	GGYRCC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	439
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	4 cut(s)	214, 392, 494, 907
BccI	CCATC	1 cut(s)	1015
BceAI	ACGGC	1 cut(s)	574
BciVI	GTATCC	1 cut(s)	700
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	3 cut(s)	54, 240, 241
BcoDI	GTCTC	2 cut(s)	1084, 1114
BfmI	CTRYAG	2 cut(s)	911, 1016
BfuAI	ACCTGC	2 cut(s)	918, 988
BfuI	GTATCC	1 cut(s)	700
BisI	GCNGC	4 cut(s)	228, 406, 483, 921
BlsI	GCNGC	4 cut(s)	229, 407, 484, 922
Bme1390I	CCNGG	3 cut(s)	54, 240, 241
BmeT110I	CYCGRG	2 cut(s)	239, 1127
BmiI	GGNNCC	4 cut(s)	27, 317, 588, 864
BmrFI	CCNGG	3 cut(s)	54, 240, 241
BmrI	ACTGGG	1 cut(s)	1188
BmsI	GCATC	1 cut(s)	621
BmuI	ACTGGG	1 cut(s)	1188
BpmI	CTGGAG	1 cut(s)	1170
BpuMI	CCSGG	3 cut(s)	54, 240, 241
BsaAI	YACGTR	1 cut(s)	764
BsaBI	GATNNNNATC	2 cut(s)	422, 839
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	4 cut(s)	239, 699, 928, 1126
BsaWI	WCCGGW	1 cut(s)	1030
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 671
Bse118I	RCCGGY	1 cut(s)	1030
Bse1I	ACTGG	3 cut(s)	501, 719, 1194
Bse3DI	GCAATG	1 cut(s)	741
Bse8I	GATNNNNATC	2 cut(s)	422, 839
BseDI	CCNNGG	4 cut(s)	239, 699, 928, 1126
BseGI	GGATG	1 cut(s)	852
BseJI	GATNNNNATC	2 cut(s)	422, 839
BseLI	CCNNNNNNNGG	2 cut(s)	433, 671
BseMI	GCAATG	1 cut(s)	741
BseMII	CTCAG	4 cut(s)	95, 787, 843, 1098
BseNI	ACTGG	3 cut(s)	501, 719, 1194
BseRI	GAGGAG	1 cut(s)	1072
BseXI	GCAGC	4 cut(s)	214, 392, 494, 907
BshFI	GGCC	3 cut(s)	257, 704, 740
BshNI	GGYRCC	1 cut(s)	315
BshTI	ACCGGT	1 cut(s)	1030
BsiHKAI	GWGCWC	1 cut(s)	11
BsiHKCI	CYCGRG	2 cut(s)	239, 1127
BsiSI	CCGG	3 cut(s)	53, 240, 1031
BslFI	GGGAC	2 cut(s)	424, 1144
BslI	CCNNNNNNNGG	2 cut(s)	433, 671
BsmAI	GTCTC	2 cut(s)	1084, 1114
BsmBI	CGTCTC	1 cut(s)	1114
BsmFI	GGGAC	2 cut(s)	424, 1144
BsnI	GGCC	3 cut(s)	257, 704, 740
BsoBI	CYCGRG	2 cut(s)	239, 1127
Bsp1286I	GDGCHC	2 cut(s)	11, 439
Bsp143I	GATC	2 cut(s)	208, 959
BspACI	CCGC	3 cut(s)	408, 626, 675
BspANI	GGCC	3 cut(s)	257, 704, 740
BspCNI	CTCAG	4 cut(s)	94, 786, 842, 1097
BspLI	GGNNCC	4 cut(s)	27, 317, 588, 864
BspMAI	CTGCAG	2 cut(s)	915, 1020
BspMI	ACCTGC	2 cut(s)	918, 988
BspT107I	GGYRCC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	741
BsrFI	RCCGGY	1 cut(s)	1030
BsrI	ACTGG	3 cut(s)	501, 719, 1194
BssAI	RCCGGY	1 cut(s)	1030
BssECI	CCNNGG	4 cut(s)	239, 699, 928, 1126
BssMI	GATC	2 cut(s)	208, 959
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	928
Bst4CI	ACNGT	5 cut(s)	116, 385, 415, 601, 1055
Bst6I	CTCTTC	1 cut(s)	830
BstACI	GRCGYC	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	764
BstC8I	GCNNGC	5 cut(s)	18, 272, 480, 624, 973
BstDEI	CTNAG	4 cut(s)	81, 773, 829, 1084
BstF5I	GGATG	1 cut(s)	852
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	2 cut(s)	211, 962
BstMAI	GTCTC	2 cut(s)	1084, 1114
BstMBI	GATC	2 cut(s)	208, 959
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 254
BstSCI	CCNGG	3 cut(s)	52, 238, 239
BstSFI	CTRYAG	2 cut(s)	911, 1016
BstV1I	GCAGC	4 cut(s)	214, 392, 494, 907
BsuI	GTATCC	1 cut(s)	700
BsuRI	GGCC	3 cut(s)	257, 704, 740
BtsCI	GGATG	1 cut(s)	852
BtsI	GCAGTG	2 cut(s)	9, 507
BtsIMutI	CAGTG	4 cut(s)	9, 494, 507, 837
BveI	ACCTGC	2 cut(s)	918, 988
Cac8I	GCNNGC	5 cut(s)	18, 272, 480, 624, 973
CaiI	CAGNNNCTG	1 cut(s)	358
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	1030
Cfr9I	CCCGGG	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	316, 662, 770
CspAI	ACCGGT	1 cut(s)	1030
CviAII	CATG	2 cut(s)	141, 787
CviQI	GTAC	3 cut(s)	316, 662, 770
DdeI	CTNAG	4 cut(s)	81, 773, 829, 1084
DpnI	GATC	2 cut(s)	210, 961
DpnII	GATC	2 cut(s)	208, 959
Eam1104I	CTCTTC	1 cut(s)	830
EarI	CTCTTC	1 cut(s)	830
EciI	GGCGGA	1 cut(s)	690
Eco130I	CCWWGG	1 cut(s)	928
Eco147I	AGGCCT	2 cut(s)	257, 704
Eco24I	GRGCYC	1 cut(s)	439
Eco88I	CYCGRG	2 cut(s)	239, 1127
EcoT14I	CCWWGG	1 cut(s)	928
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	928
Esp3I	CGTCTC	1 cut(s)	1114
FaeI	CATG	2 cut(s)	144, 790
FaiI	YATR	8 cut(s)	142, 207, 584, 788, 907, 952, 1008, 1010
FaqI	GGGAC	2 cut(s)	424, 1144
FatI	CATG	2 cut(s)	140, 786
FauI	CCCGC	1 cut(s)	401
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	4 cut(s)	228, 406, 483, 921
FokI	GGATG	1 cut(s)	839
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	4 cut(s)	228, 406, 483, 921
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	4 cut(s)	228, 406, 483, 921
GsuI	CTGGAG	1 cut(s)	1170
HaeIII	GGCC	3 cut(s)	257, 704, 740
HapII	CCGG	3 cut(s)	53, 240, 1031
HhaI	GCGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	144, 790
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	2 cut(s)	803, 1036
HpaII	CCGG	3 cut(s)	53, 240, 1031
HphI	GGTGA	5 cut(s)	688, 1020, 1045, 1084, 1104
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	360
Hpy188III	TCNNGA	4 cut(s)	427, 1048, 1129, 1167
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	7 cut(s)	39, 193, 211, 703, 859, 876, 878
HpyCH4III	ACNGT	5 cut(s)	116, 385, 415, 601, 1055
HpyCH4IV	ACGT	4 cut(s)	98, 161, 534, 763
HpyCH4V	TGCA	7 cut(s)	4, 482, 734, 905, 913, 923, 1018
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 254
HpyF3I	CTNAG	4 cut(s)	81, 773, 829, 1084
HpySE526I	ACGT	4 cut(s)	98, 161, 534, 763
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	144, 790
HspAI	GCGC	1 cut(s)	14
KpnI	GGTACC	1 cut(s)	319
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	2 cut(s)	208, 959
LmnI	GCTCC	2 cut(s)	31, 586
Lsp1109I	GCAGC	4 cut(s)	214, 392, 494, 907
LweI	GCATC	1 cut(s)	621
MaeII	ACGT	4 cut(s)	98, 161, 534, 763
MaeIII	GTNAC	3 cut(s)	385, 748, 1033
MalI	GATC	2 cut(s)	210, 961
MboI	GATC	2 cut(s)	208, 959
MboII	GAAGA	7 cut(s)	159, 162, 482, 586, 817, 1084, 1087
MfeI	CAATTG	1 cut(s)	666
MhlI	GDGCHC	2 cut(s)	11, 439
MluCI	AATT	4 cut(s)	309, 486, 666, 893
MlyI	GAGTC	1 cut(s)	1030
MseI	TTAA	5 cut(s)	279, 441, 711, 792, 891
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	3 cut(s)	53, 240, 1031
MspR9I	CCNGG	3 cut(s)	54, 240, 241
MunI	CAATTG	1 cut(s)	666
MwoI	GCNNNNNNNGC	2 cut(s)	142, 254
NciI	CCSGG	3 cut(s)	54, 240, 241
NdeII	GATC	2 cut(s)	208, 959
NlaIII	CATG	2 cut(s)	144, 790
NlaIV	GGNNCC	4 cut(s)	27, 317, 588, 864
NmuCI	GTSAC	2 cut(s)	385, 1033
PaqCI	CACCTGC	1 cut(s)	988
PceI	AGGCCT	2 cut(s)	257, 704
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	803
PinAI	ACCGGT	1 cut(s)	1030
PkrI	GCNGC	4 cut(s)	229, 407, 484, 922
PleI	GAGTC	1 cut(s)	1030
PpsI	GAGTC	1 cut(s)	1030
Ppu21I	YACGTR	1 cut(s)	764
Psp1406I	AACGTT	1 cut(s)	534
PspN4I	GGNNCC	4 cut(s)	27, 317, 588, 864
PstI	CTGCAG	2 cut(s)	915, 1020
PstNI	CAGNNNCTG	1 cut(s)	358
RsaI	GTAC	3 cut(s)	317, 663, 771
RsaNI	GTAC	3 cut(s)	316, 662, 770
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	5 cut(s)	279, 441, 711, 792, 891
SatI	GCNGC	4 cut(s)	228, 406, 483, 921
Sau3AI	GATC	2 cut(s)	208, 959
SchI	GAGTC	1 cut(s)	1030
ScrFI	CCNGG	3 cut(s)	54, 240, 241
SduI	GDGCHC	2 cut(s)	11, 439
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	2 cut(s)	911, 1016
SgrAI	CRCCGGYG	1 cut(s)	1030
SmaI	CCCGGG	1 cut(s)	241
SmiMI	CAYNNNNRTG	1 cut(s)	204
Sse9I	AATT	4 cut(s)	309, 486, 666, 893
SseBI	AGGCCT	2 cut(s)	257, 704
SsiI	CCGC	3 cut(s)	408, 626, 675
SspI	AATATT	2 cut(s)	328, 640
StuI	AGGCCT	2 cut(s)	257, 704
StyD4I	CCNGG	3 cut(s)	52, 238, 239
StyI	CCWWGG	1 cut(s)	928
TaaI	ACNGT	5 cut(s)	116, 385, 415, 601, 1055
TaiI	ACGT	4 cut(s)	101, 164, 537, 766
TaqI	TCGA	2 cut(s)	58, 260
TasI	AATT	4 cut(s)	309, 486, 666, 893
TatI	WGTACW	1 cut(s)	769
TfiI	GAWTC	1 cut(s)	803
Tru1I	TTAA	5 cut(s)	279, 441, 711, 792, 891
Tru9I	TTAA	5 cut(s)	279, 441, 711, 792, 891
TscAI	CASTG	4 cut(s)	16, 501, 507, 837
TseFI	GTSAC	2 cut(s)	385, 1033
TseI	GCWGC	4 cut(s)	227, 405, 482, 920
Tsp45I	GTSAC	2 cut(s)	385, 1033
TspDTI	ATGAA	3 cut(s)	129, 775, 841
TspMI	CCCGGG	1 cut(s)	239
TspRI	CASTG	4 cut(s)	16, 501, 507, 837
XapI	RAATTY	2 cut(s)	309, 893
XmaI	CCCGGG	1 cut(s)	239
ZraI	GACGTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.