Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013947

Physical Location & Seq

Genomic Coordinates Reverse (-)

80533873 .. 80536533

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G052600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCAGAGCAGTGCGATTGCTCTGTCTCCTTCCACCCCATTTCTAAAATCTCCATGTCGAATCCCGAGCTGTAAATTCTCTCAACTTTCAGCCTCGACTTGTTTTACACAACTTCACCGTATCAGTTCTATTCAGAGACTTTACTGGCAAACAGCTTTTGGCACGTTTTCTACTTCTTCTTCCTCTTTAAATGCTGAAATCCCTGCCTCCTTCCTTTCCGTAAACCGAAGTTATGATAGTTTGAAGGTCAGGGCTGCTCAGGCTGCTGCTCCGGGGCCTGAGAGTGCTGGGGAGGCTCCAGAATCAAGTGGATTGGCTCGAACTTTGCAGCTCGGTGCCATGTTTGGAATTTGGTACCTGTTGAACATTTACTTCAACATCTACAACAAACAGGTTCTGAAAGTCTATCCATTTCCAGCCACGGTTACAGCCTTTCAGTTTGCCTGTGGGACTGTCATGATTATCCTGATGTGGACTCTAAACCTCTACCCCAGACCGAAGATCACTCGCTCACAGCTTGCAGCAATTCTACCACTGGCTGTGACGCACACGATGGGAAACCTATTGACCAACATCAGTATCGGGAAAGTTGCTGTTTCATTCACTCACACGATCAAATCTATGGAGCCCTTCTTCACTGTCCTATTCTCAGCCCTCTTGCTTGCAGAGAGACCAACTATCTGGGTGGTTTCTTCTCTTGTACCAATTGTAGGTGGAGTTGCATTGGCGTCCTTCACAGAGGCCTCTTTTAATTGGATTGGCTTTGGTAGTGCAATGGCTTCTAATATCACTAACCAGTCGCGTAATGTACTCAGCAAGAAGCTCATGGTCAAGAAAGAGGAATCTTTGGACAATATCAATCTCTTCTCAGTGATAACCATCATTTCTTTCATACTGTTGCTTCCTTCTACTATTCTCTTGGAAGGCGTTAAATTTAGTCCTTCATACCTGCAATCCGCTGCAAACCAAGGATTGAACATCAAAGAGTTGTGTGTGAGATCACTTCTGGCTGGTTTCTGCTTCCACACTTACCAGCAGGTCTCGTATATGATACTGCAGATGGTATCACCAGTCACACATGCGGTAGGGAACTGTGTGAAGCGAGTGGTGGTCATAGTCTCCTCAGTCATCTTCTTCCAAACACCGGTCTCACCCATAAACTCCCTCGGAACTGCTATGGCTCTTGCCGGAGTCTTCTTATATTCAAGAGCCAAGAGAATTAAGCCAAAGCCCAAGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009670 GO:0015075 GO:0015121 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022804 GO:0022857 GO:0034220 GO:0035436 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

414

Amino Acids

45.07

Weight (kDa)

9.87

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	109 - 402	3.9e-122	Triose-phosphate Transporter family
EamA	PF00892	128 - 244	5.4e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01550 AT3G01550
fragaria_vesca	FvH4_6g51010 FvH4_6g51010
malus_domestica	MD09G1029600.v1.1
prunus_persica	Prupe.3G287800_v2.0.a1 Prupe.3G287800_v2.0.a1
pyrus_communis	pycom111g02360
rosa_chinensis	RchiOBHm_Chr2g0172541
rosa_laevigata	RLG00000022114
rosa_multiflora	Rmu_sc0000912.1_g000007
rosa_rugosa	Rorug02G0559700.1
rosa_samantha	Rh2AG635800 Rh2BG649200 Rh2CG616000 Rh2DG663600
rosa_wichuraiana	Rw2G052600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	957, 1027
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	2 cut(s)	335, 354
AccII	CGCG	1 cut(s)	802
AciI	CCGC	2 cut(s)	957, 1082
AcsI	RAATTY	3 cut(s)	74, 348, 932
AcyI	GRCGYC	1 cut(s)	728
AfaI	GTAC	3 cut(s)	356, 702, 810
AfiI	CCNNNNNNNGG	2 cut(s)	710, 1144
AgeI	ACCGGT	1 cut(s)	1144
AgsI	TTSAA	5 cut(s)	244, 364, 376, 976, 1206
AluBI	AGCT	5 cut(s)	69, 155, 331, 517, 823
AluI	AGCT	5 cut(s)	69, 155, 331, 517, 823
Alw26I	GTCTC	6 cut(s)	30, 130, 664, 1045, 1123, 1153
AlwNI	CAGNNNCTG	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	2 cut(s)	275, 741
ApeKI	GCWGC	7 cut(s)	254, 263, 266, 328, 521, 959, 1238
ApoI	RAATTY	3 cut(s)	74, 348, 932
AsiGI	ACCGGT	1 cut(s)	1144
Asp718I	GGTACC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	3 cut(s)	107, 1059, 1143
AvaI	CYCGRG	1 cut(s)	64
BaeI	ACNNNNGTAYC	2 cut(s)	562, 595
BanI	GGYRCC	2 cut(s)	335, 354
BanII	GRGCYC	1 cut(s)	630
BbsI	GAAGAC	1 cut(s)	1186
BbvI	GCAGC	7 cut(s)	241, 250, 253, 340, 533, 946, 1225
BccI	CCATC	3 cut(s)	547, 887, 1054
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	6 cut(s)	30, 130, 664, 1045, 1123, 1153
BfmI	CTRYAG	1 cut(s)	1055
BfuAI	ACCTGC	2 cut(s)	957, 1027
BisI	GCNGC	7 cut(s)	255, 264, 267, 329, 522, 960, 1239
BlsI	GCNGC	7 cut(s)	256, 265, 268, 330, 523, 961, 1240
Bme1390I	CCNGG	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	5 cut(s)	276, 297, 337, 356, 627
BmrFI	CCNGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	1186
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	878
BsaHI	GRCGYC	1 cut(s)	728
BsaI	GGTCTC	3 cut(s)	664, 1045, 1153
BsaJI	CCNNGG	5 cut(s)	272, 420, 967, 1165, 1233
BsaWI	WCCGGW	1 cut(s)	1144
Bsc4I	CCNNNNNNNGG	2 cut(s)	710, 1144
Bse118I	RCCGGY	1 cut(s)	1144
Bse1I	ACTGG	4 cut(s)	149, 540, 796, 1070
Bse3DI	GCAATG	1 cut(s)	780
Bse8I	GATNNNNATC	1 cut(s)	878
BseDI	CCNNGG	5 cut(s)	272, 420, 967, 1165, 1233
BseJI	GATNNNNATC	1 cut(s)	878
BseLI	CCNNNNNNNGG	2 cut(s)	710, 1144
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	6 cut(s)	270, 272, 663, 826, 882, 1137
BseNI	ACTGG	4 cut(s)	149, 540, 796, 1070
BseRI	GAGGAG	1 cut(s)	1111
BseXI	GCAGC	7 cut(s)	241, 250, 253, 340, 533, 946, 1225
BseYI	CCCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	802
BshFI	GGCC	2 cut(s)	277, 743
BshNI	GGYRCC	2 cut(s)	335, 354
BshTI	ACCGGT	1 cut(s)	1144
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	3 cut(s)	272, 1145, 1188
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	2 cut(s)	710, 1144
BsmAI	GTCTC	6 cut(s)	30, 130, 664, 1045, 1123, 1153
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	277, 743
Bso31I	GGTCTC	3 cut(s)	664, 1045, 1153
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	630
Bsp143I	GATC	3 cut(s)	501, 612, 998
BspACI	CCGC	2 cut(s)	957, 1082
BspANI	GGCC	2 cut(s)	277, 743
BspCNI	CTCAG	6 cut(s)	271, 271, 662, 825, 881, 1136
BspFNI	CGCG	1 cut(s)	802
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	5 cut(s)	276, 297, 337, 356, 627
BspMAI	CTGCAG	1 cut(s)	1059
BspMI	ACCTGC	2 cut(s)	957, 1027
BspT107I	GGYRCC	2 cut(s)	335, 354
BspTNI	GGTCTC	3 cut(s)	664, 1045, 1153
BsrDI	GCAATG	1 cut(s)	780
BsrFI	RCCGGY	1 cut(s)	1144
BsrI	ACTGG	4 cut(s)	149, 540, 796, 1070
BssAI	RCCGGY	1 cut(s)	1144
BssECI	CCNNGG	5 cut(s)	272, 420, 967, 1165, 1233
BssMI	GATC	3 cut(s)	501, 612, 998
BssNI	GRCGYC	1 cut(s)	728
BssT1I	CCWWGG	2 cut(s)	967, 1233
Bst4CI	ACNGT	6 cut(s)	119, 424, 454, 640, 897, 1094
Bst6I	CTCTTC	1 cut(s)	869
BstACI	GRCGYC	1 cut(s)	728
BstC8I	GCNNGC	2 cut(s)	519, 663
BstDEI	CTNAG	6 cut(s)	258, 279, 649, 812, 868, 1123
BstDSI	CCRYGG	1 cut(s)	420
BstFNI	CGCG	1 cut(s)	802
BstKTI	GATC	3 cut(s)	504, 615, 1001
BstMAI	GTCTC	6 cut(s)	30, 130, 664, 1045, 1123, 1153
BstMBI	GATC	3 cut(s)	501, 612, 998
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 263, 293
BstNSI	RCATGY	1 cut(s)	1082
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	1055
BstUI	CGCG	1 cut(s)	802
BstV1I	GCAGC	7 cut(s)	241, 250, 253, 340, 533, 946, 1225
BstV2I	GAAGAC	1 cut(s)	1186
BstXI	CCANNNNNNTGG	1 cut(s)	681
BsuRI	GGCC	2 cut(s)	277, 743
BtgI	CCRYGG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	4 cut(s)	16, 533, 636, 876
BveI	ACCTGC	2 cut(s)	957, 1027
Cac8I	GCNNGC	2 cut(s)	519, 663
CaiI	CAGNNNCTG	1 cut(s)	397
CciI	TCATGA	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	1144
Cfr13I	GGNCC	1 cut(s)	275
CseI	GACGC	2 cut(s)	553, 717
Csp6I	GTAC	3 cut(s)	355, 701, 809
CspAI	ACCGGT	1 cut(s)	1144
CviAII	CATG	5 cut(s)	54, 340, 457, 826, 1079
CviQI	GTAC	3 cut(s)	355, 701, 809
DdeI	CTNAG	6 cut(s)	258, 279, 649, 812, 868, 1123
DpnI	GATC	3 cut(s)	503, 614, 1000
DpnII	GATC	3 cut(s)	501, 612, 998
DraI	TTTAAA	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	869
EarI	CTCTTC	1 cut(s)	869
Eco130I	CCWWGG	2 cut(s)	967, 1233
Eco147I	AGGCCT	1 cut(s)	743
Eco24I	GRGCYC	1 cut(s)	630
Eco31I	GGTCTC	3 cut(s)	664, 1045, 1153
Eco88I	CYCGRG	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	275
EcoT14I	CCWWGG	2 cut(s)	967, 1233
EcoT38I	GRGCYC	1 cut(s)	630
ErhI	CCWWGG	2 cut(s)	967, 1233
FaeI	CATG	5 cut(s)	57, 343, 460, 829, 1082
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	5 cut(s)	53, 339, 456, 825, 1078
Fnu4HI	GCNGC	7 cut(s)	255, 264, 267, 329, 522, 960, 1239
FriOI	GRGCYC	1 cut(s)	630
Fsp4HI	GCNGC	7 cut(s)	255, 264, 267, 329, 522, 960, 1239
GluI	GCNGC	7 cut(s)	255, 264, 267, 329, 522, 960, 1239
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	277, 743
HapII	CCGG	3 cut(s)	272, 1145, 1188
HgaI	GACGC	2 cut(s)	553, 717
Hin1I	GRCGYC	1 cut(s)	728
Hin1II	CATG	5 cut(s)	57, 343, 460, 829, 1082
HinfI	GANTC	5 cut(s)	60, 302, 475, 842, 1191
HpaII	CCGG	3 cut(s)	272, 1145, 1188
HphI	GGTGA	3 cut(s)	107, 1059, 1143
Hpy166II	GTNNAC	2 cut(s)	223, 474
Hpy188I	TCNGA	3 cut(s)	135, 399, 1169
Hpy188III	TCNNGA	7 cut(s)	64, 299, 457, 466, 583, 832, 1206
Hpy8I	GTNNAC	2 cut(s)	223, 474
HpyAV	CCTTC	8 cut(s)	39, 220, 238, 640, 742, 915, 917, 951
HpyCH4III	ACNGT	6 cut(s)	119, 424, 454, 640, 897, 1094
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	9 cut(s)	4, 328, 521, 665, 722, 773, 952, 962, 1057
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 263, 293
HpyF3I	CTNAG	6 cut(s)	258, 279, 649, 812, 868, 1123
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	728
Hsp92II	CATG	5 cut(s)	57, 343, 460, 829, 1082
KpnI	GGTACC	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	501, 612, 998
LmnI	GCTCC	3 cut(s)	274, 301, 625
Lsp1109I	GCAGC	7 cut(s)	241, 250, 253, 340, 533, 946, 1225
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	3 cut(s)	424, 541, 1072
MalI	GATC	3 cut(s)	503, 614, 1000
MboI	GATC	3 cut(s)	501, 612, 998
MboII	GAAGA	9 cut(s)	168, 171, 511, 625, 684, 856, 1123, 1126, 1186
MfeI	CAATTG	1 cut(s)	705
MhlI	GDGCHC	1 cut(s)	630
MluCI	AATT	7 cut(s)	74, 348, 525, 705, 751, 932, 1218
MlyI	GAGTC	2 cut(s)	469, 1200
MseI	TTAA	4 cut(s)	188, 750, 930, 1221
MspA1I	CMGCKG	1 cut(s)	959
MspI	CCGG	3 cut(s)	272, 1145, 1188
MspR9I	CCNGG	1 cut(s)	273
MunI	CAATTG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	802
MwoI	GCNNNNNNNGC	3 cut(s)	260, 263, 293
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	3 cut(s)	501, 612, 998
NlaIII	CATG	5 cut(s)	57, 343, 460, 829, 1082
NlaIV	GGNNCC	5 cut(s)	276, 297, 337, 356, 627
NmuCI	GTSAC	2 cut(s)	541, 1072
NspI	RCATGY	1 cut(s)	1082
PagI	TCATGA	1 cut(s)	456
PceI	AGGCCT	1 cut(s)	743
PfeI	GAWTC	3 cut(s)	60, 302, 842
PinAI	ACCGGT	1 cut(s)	1144
PkrI	GCNGC	7 cut(s)	256, 265, 268, 330, 523, 961, 1240
PleI	GAGTC	2 cut(s)	469, 1199
PpsI	GAGTC	2 cut(s)	469, 1199
PspFI	CCCAGC	1 cut(s)	287
PspN4I	GGNNCC	5 cut(s)	276, 297, 337, 356, 627
PspPI	GGNCC	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	1059
PstNI	CAGNNNCTG	1 cut(s)	397
RsaI	GTAC	3 cut(s)	356, 702, 810
RsaNI	GTAC	3 cut(s)	355, 701, 809
SaqAI	TTAA	4 cut(s)	188, 750, 930, 1221
SatI	GCNGC	7 cut(s)	255, 264, 267, 329, 522, 960, 1239
Sau3AI	GATC	3 cut(s)	501, 612, 998
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	469, 1200
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	630
SfcI	CTRYAG	1 cut(s)	1055
Sse9I	AATT	7 cut(s)	74, 348, 525, 705, 751, 932, 1218
SseBI	AGGCCT	1 cut(s)	743
SsiI	CCGC	2 cut(s)	957, 1082
StuI	AGGCCT	1 cut(s)	743
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	2 cut(s)	967, 1233
TaaI	ACNGT	6 cut(s)	119, 424, 454, 640, 897, 1094
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	58, 95, 319
TaqII	GACCGA	1 cut(s)	511
TasI	AATT	7 cut(s)	74, 348, 525, 705, 751, 932, 1218
TatI	WGTACW	1 cut(s)	808
TfiI	GAWTC	3 cut(s)	60, 302, 842
Tru1I	TTAA	4 cut(s)	188, 750, 930, 1221
Tru9I	TTAA	4 cut(s)	188, 750, 930, 1221
TscAI	CASTG	4 cut(s)	16, 540, 643, 876
TseFI	GTSAC	2 cut(s)	541, 1072
TseI	GCWGC	7 cut(s)	254, 263, 266, 328, 521, 959, 1238
Tsp45I	GTSAC	2 cut(s)	541, 1072
TspDTI	ATGAA	3 cut(s)	588, 880, 933
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	4 cut(s)	16, 540, 643, 876
XapI	RAATTY	3 cut(s)	74, 348, 932
XceI	RCATGY	1 cut(s)	1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.