Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013947

Physical Location & Seq

Genomic Coordinates Reverse (-)

37882008 .. 37885105

Gene Structure 3098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51010.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGCAGGGCAGCGCTCTTGCTCTGTCTCCTTCCACCCCATTTATGAAACCTCCATGTCGAATTCCAAGCTATAAACTCTCTCACCTTCCAGCCTTGACTTCTTTACCACAACTCCACCGTATCAGTTCAGTTCAGAGACTTCACTGGCAAACAGCTTTTGGCACATTTTCTTCTTCTTATTCTTCCTCTTTCAATGCTGAAATCCCTGCCTCCTTCCTTTCCTCAAATAGTAGATGCGATAGTTTTAAGGTCAGGGCCGCTCAGCCTGCTACTCCGGGGCCTGAGAGTGCCGGGGAGGCTTCAGAATCAAGTGGATTGGCTCGAACTTTGCAGCTCGGTGCCATGTTTGGAATTTGGTACCTTTTAAACATTTACTTCAACATCTACAACAAACAGGTTCTGAAAGTCTATCCGTTTCCAGCCACGGTTACAGCCTTTCAGTTTGCCTGTGGGACTGTCATGATCATCCTGATGTGGACTCTAAACCTCTACCCCAGACCGAAGATCACTCGCTCACAGCTTGCAACAATTCTACCACTGGCTGTGGCGCATACGATGGGAAACCTATTGACTAACATCAGTCTCGGGAAAGTTACTGTTTCATTCACTCACACGATCAAAGCTATGGAGCCCTTCTTCACCGTCCTATTCTCAGCCCTCTTGCTTGCAGAGAGGCCAACTATCTGGGTGGTTTCTTCTCTTGTACCAATTGTAAGTGGAGTTGCATTGGCGTCCTTCACAGAGGCCTCTTTCAATTGGATTGGCTTTGGTAGTGCAATGGCTTCTAATATCACTAACCAGTCACGTAATGTACTCAGCAAGAAGTTCATGGCCAAGAAAGAGGAGTGCCTGGACAATATCAATCTCTTTTCAGTGATAACCATCATTTCCTTCATATTGTTGCTTCCTTCTGCTATTCTCTTGGAAGGCGTTAAATTTAGTCCTTCATACCTGCAATCTGCTGCAAACCAAGGATTGAACATCAAAGAGTTGTGTGTGAGGTCGCTTCTGGCTGGTTTCTGCTTCCACACTTACCAGCAGGTCTCGTATATGATACTACAGATGGTTTCACCAGTCACACACGCAGTTGGGAACTGTGTGAAGCGAGTGGTGGTCATAGTCTCCTCAGTCATTTTCTTCCAAACACCGGTCTCACCCATAAACTCCCTCGGAACTGCTATGGCTCTTGCTGGAGTCTTCTTGTATTCAAGAGCCAAGAGAATTAAGCCAAAGCCCAAGGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009670 GO:0015075 GO:0015121 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022804 GO:0022857 GO:0034220 GO:0035436 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

416

Amino Acids

45.27

Weight (kDa)

9.87

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	110 - 353	1.2e-90	Triose-phosphate Transporter family
EamA	PF00892	129 - 245	7.3e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01550 AT3G01550
fragaria_vesca	FvH4_6g51010 FvH4_6g51010
malus_domestica	MD09G1029600.v1.1
prunus_persica	Prupe.3G287800_v2.0.a1 Prupe.3G287800_v2.0.a1
pyrus_communis	pycom111g02360
rosa_chinensis	RchiOBHm_Chr2g0172541
rosa_laevigata	RLG00000022114
rosa_multiflora	Rmu_sc0000912.1_g000007
rosa_rugosa	Rorug02G0559700.1
rosa_samantha	Rh2AG635800 Rh2BG649200 Rh2CG616000 Rh2DG663600
rosa_wichuraiana	Rw2G052600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	960, 1030
Acc65I	GGTACC	1 cut(s)	357
AccB1I	GGYRCC	2 cut(s)	338, 357
AccBSI	CCGCTC	1 cut(s)	260
AciI	CCGC	1 cut(s)	258
AcoI	YGGCCR	1 cut(s)	831
AcsI	RAATTY	3 cut(s)	60, 351, 935
AcuI	CTGAAG	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	731
AfaI	GTAC	3 cut(s)	359, 705, 813
AfeI	AGCGCT	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	1147
AgeI	ACCGGT	1 cut(s)	1147
AgsI	TTSAA	5 cut(s)	193, 379, 754, 979, 1209
AjnI	CCWGG	1 cut(s)	849
AluBI	AGCT	5 cut(s)	69, 155, 334, 520, 623
AluI	AGCT	5 cut(s)	69, 155, 334, 520, 623
Alw26I	GTCTC	6 cut(s)	30, 130, 587, 1048, 1126, 1156
AlwNI	CAGNNNCTG	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	584
Aor51HI	AGCGCT	1 cut(s)	13
AoxI	GGCC	5 cut(s)	255, 278, 674, 744, 831
ApeKI	GCWGC	4 cut(s)	9, 331, 962, 1241
ApoI	RAATTY	3 cut(s)	60, 351, 935
AsiGI	ACCGGT	1 cut(s)	1147
Asp718I	GGTACC	1 cut(s)	357
AspLEI	GCGC	2 cut(s)	14, 550
AspS9I	GGNCC	2 cut(s)	255, 278
AsuC2I	CCSGG	2 cut(s)	276, 292
AsuHPI	GGTGA	4 cut(s)	74, 631, 1062, 1146
AvaI	CYCGRG	1 cut(s)	584
BalI	TGGCCA	1 cut(s)	833
BanI	GGYRCC	2 cut(s)	338, 357
BanII	GRGCYC	1 cut(s)	633
BbsI	GAAGAC	1 cut(s)	1189
BbvI	GCAGC	4 cut(s)	21, 343, 949, 1228
BccI	CCATC	3 cut(s)	550, 890, 1057
BciT130I	CCWGG	1 cut(s)	851
BclI	TGATCA	1 cut(s)	462
BcnI	CCSGG	2 cut(s)	276, 292
BcoDI	GTCTC	6 cut(s)	30, 130, 587, 1048, 1126, 1156
BfmI	CTRYAG	1 cut(s)	1058
BfoI	RGCGCY	1 cut(s)	15
BfuAI	ACCTGC	2 cut(s)	960, 1030
BglI	GCCNNNNNGGC	1 cut(s)	296
BisI	GCNGC	5 cut(s)	10, 258, 332, 963, 1242
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	5 cut(s)	11, 259, 333, 964, 1243
Bme1390I	CCNGG	3 cut(s)	276, 292, 851
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	2 cut(s)	255, 278
BmiI	GGNNCC	4 cut(s)	279, 340, 359, 630
BmrFI	CCNGG	3 cut(s)	276, 292, 851
BmsI	GCATC	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	1189
BpmI	CTGGAG	1 cut(s)	1212
Bpu1102I	GCTNAGC	1 cut(s)	261
BpuMI	CCSGG	2 cut(s)	276, 292
BsaAI	YACGTR	1 cut(s)	806
BsaBI	GATNNNNATC	1 cut(s)	881
BsaHI	GRCGYC	1 cut(s)	731
BsaI	GGTCTC	2 cut(s)	1048, 1156
BsaJI	CCNNGG	6 cut(s)	275, 291, 423, 970, 1168, 1236
BsaWI	WCCGGW	1 cut(s)	1147
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	1147
Bse118I	RCCGGY	1 cut(s)	1147
Bse1I	ACTGG	4 cut(s)	149, 543, 799, 1073
Bse3DI	GCAATG	1 cut(s)	783
Bse8I	GATNNNNATC	1 cut(s)	881
BseBI	CCWGG	1 cut(s)	851
BseDI	CCNNGG	6 cut(s)	275, 291, 423, 970, 1168, 1236
BseGI	GGATG	1 cut(s)	465
BseJI	GATNNNNATC	1 cut(s)	881
BseLI	CCNNNNNNNGG	1 cut(s)	1147
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	5 cut(s)	273, 275, 666, 829, 1140
BseNI	ACTGG	4 cut(s)	149, 543, 799, 1073
BseRI	GAGGAG	2 cut(s)	857, 1114
BseXI	GCAGC	4 cut(s)	21, 343, 949, 1228
BshFI	GGCC	5 cut(s)	257, 280, 676, 746, 833
BshNI	GGYRCC	2 cut(s)	338, 357
BshTI	ACCGGT	1 cut(s)	1147
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	3 cut(s)	275, 291, 1148
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	1 cut(s)	1147
BsmAI	GTCTC	6 cut(s)	30, 130, 587, 1048, 1126, 1156
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	5 cut(s)	257, 280, 676, 746, 833
Bso31I	GGTCTC	2 cut(s)	1048, 1156
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	3 cut(s)	462, 504, 615
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	5 cut(s)	257, 280, 676, 746, 833
BspCNI	CTCAG	5 cut(s)	274, 274, 665, 828, 1139
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	4 cut(s)	279, 340, 359, 630
BspMI	ACCTGC	2 cut(s)	960, 1030
BspT107I	GGYRCC	2 cut(s)	338, 357
BspTNI	GGTCTC	2 cut(s)	1048, 1156
BsrBI	CCGCTC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	783
BsrFI	RCCGGY	1 cut(s)	1147
BsrI	ACTGG	4 cut(s)	149, 543, 799, 1073
BssAI	RCCGGY	1 cut(s)	1147
BssECI	CCNNGG	6 cut(s)	275, 291, 423, 970, 1168, 1236
BssMI	GATC	3 cut(s)	462, 504, 615
BssNI	GRCGYC	1 cut(s)	731
BssT1I	CCWWGG	2 cut(s)	970, 1236
Bst2UI	CCWGG	1 cut(s)	851
Bst4CI	ACNGT	6 cut(s)	119, 427, 457, 598, 643, 1097
BstACI	GRCGYC	1 cut(s)	731
BstBAI	YACGTR	1 cut(s)	806
BstC8I	GCNNGC	3 cut(s)	267, 522, 666
BstDEI	CTNAG	5 cut(s)	261, 282, 652, 815, 1126
BstDSI	CCRYGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	465
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 550
BstKTI	GATC	3 cut(s)	465, 507, 618
BstMAI	GTCTC	6 cut(s)	30, 130, 587, 1048, 1126, 1156
BstMBI	GATC	3 cut(s)	462, 504, 615
BstMWI	GCNNNNNNNGC	2 cut(s)	266, 296
BstNI	CCWGG	1 cut(s)	851
BstSCI	CCNGG	3 cut(s)	274, 290, 849
BstSFI	CTRYAG	1 cut(s)	1058
BstV1I	GCAGC	4 cut(s)	21, 343, 949, 1228
BstV2I	GAAGAC	1 cut(s)	1189
BstXI	CCANNNNNNTGG	1 cut(s)	684
BsuRI	GGCC	5 cut(s)	257, 280, 676, 746, 833
BtgI	CCRYGG	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	465
BtsIMutI	CAGTG	3 cut(s)	142, 536, 879
BveI	ACCTGC	2 cut(s)	960, 1030
Cac8I	GCNNGC	3 cut(s)	267, 522, 666
CaiI	CAGNNNCTG	1 cut(s)	400
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	2 cut(s)	14, 550
Cfr10I	RCCGGY	1 cut(s)	1147
Cfr13I	GGNCC	2 cut(s)	255, 278
CseI	GACGC	1 cut(s)	720
Csp6I	GTAC	3 cut(s)	358, 704, 812
CspAI	ACCGGT	1 cut(s)	1147
CviAII	CATG	4 cut(s)	54, 343, 460, 829
CviQI	GTAC	3 cut(s)	358, 704, 812
DdeI	CTNAG	5 cut(s)	261, 282, 652, 815, 1126
DpnI	GATC	3 cut(s)	464, 506, 617
DpnII	GATC	3 cut(s)	462, 504, 615
DraI	TTTAAA	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	831
Eco130I	CCWWGG	2 cut(s)	970, 1236
Eco147I	AGGCCT	1 cut(s)	746
Eco24I	GRGCYC	1 cut(s)	633
Eco31I	GGTCTC	2 cut(s)	1048, 1156
Eco47III	AGCGCT	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	849
EcoT14I	CCWWGG	2 cut(s)	970, 1236
EcoT38I	GRGCYC	1 cut(s)	633
ErhI	CCWWGG	2 cut(s)	970, 1236
FaeI	CATG	4 cut(s)	57, 346, 463, 832
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	4 cut(s)	53, 342, 459, 828
FbaI	TGATCA	1 cut(s)	462
Fnu4HI	GCNGC	5 cut(s)	10, 258, 332, 963, 1242
FokI	GGATG	1 cut(s)	452
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	5 cut(s)	10, 258, 332, 963, 1242
GlaI	GCGC	2 cut(s)	13, 549
GluI	GCNGC	5 cut(s)	10, 258, 332, 963, 1242
GsuI	CTGGAG	1 cut(s)	1212
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	5 cut(s)	257, 280, 676, 746, 833
HapII	CCGG	3 cut(s)	275, 291, 1148
HgaI	GACGC	1 cut(s)	720
HhaI	GCGC	2 cut(s)	14, 550
Hin1I	GRCGYC	1 cut(s)	731
Hin1II	CATG	4 cut(s)	57, 346, 463, 832
Hin6I	GCGC	2 cut(s)	12, 548
HinP1I	GCGC	2 cut(s)	12, 548
HinfI	GANTC	3 cut(s)	305, 478, 1194
HpaII	CCGG	3 cut(s)	275, 291, 1148
HphI	GGTGA	4 cut(s)	74, 631, 1062, 1146
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	4 cut(s)	135, 304, 402, 1172
Hpy188III	TCNNGA	4 cut(s)	460, 469, 586, 1209
Hpy8I	GTNNAC	1 cut(s)	477
HpyAV	CCTTC	9 cut(s)	39, 95, 223, 643, 745, 901, 918, 920, 954
HpyCH4III	ACNGT	6 cut(s)	119, 427, 457, 598, 643, 1097
HpyCH4IV	ACGT	1 cut(s)	805
HpyCH4V	TGCA	8 cut(s)	4, 331, 524, 668, 725, 776, 955, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	266, 296
HpyF3I	CTNAG	5 cut(s)	261, 282, 652, 815, 1126
HpySE526I	ACGT	1 cut(s)	805
Hsp92I	GRCGYC	1 cut(s)	731
Hsp92II	CATG	4 cut(s)	57, 346, 463, 832
HspAI	GCGC	2 cut(s)	12, 548
KpnI	GGTACC	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	462, 504, 615
LmnI	GCTCC	1 cut(s)	628
Lsp1109I	GCAGC	4 cut(s)	21, 343, 949, 1228
LweI	GCATC	1 cut(s)	224
MaeII	ACGT	1 cut(s)	805
MaeIII	GTNAC	4 cut(s)	427, 592, 801, 1075
MalI	GATC	3 cut(s)	464, 506, 617
MbiI	CCGCTC	1 cut(s)	260
MboI	GATC	3 cut(s)	462, 504, 615
MboII	GAAGA	8 cut(s)	162, 165, 174, 514, 628, 687, 1129, 1189
MfeI	CAATTG	2 cut(s)	708, 754
MhlI	GDGCHC	1 cut(s)	633
MlsI	TGGCCA	1 cut(s)	833
MluCI	AATT	7 cut(s)	60, 351, 528, 708, 754, 935, 1221
MluNI	TGGCCA	1 cut(s)	833
MlyI	GAGTC	2 cut(s)	472, 1203
Mox20I	TGGCCA	1 cut(s)	833
MscI	TGGCCA	1 cut(s)	833
MseI	TTAA	5 cut(s)	246, 365, 933, 1224, 1246
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	833
MspI	CCGG	3 cut(s)	275, 291, 1148
MspR9I	CCNGG	3 cut(s)	276, 292, 851
MunI	CAATTG	2 cut(s)	708, 754
MvaI	CCWGG	1 cut(s)	851
MwoI	GCNNNNNNNGC	2 cut(s)	266, 296
NciI	CCSGG	2 cut(s)	276, 292
NdeII	GATC	3 cut(s)	462, 504, 615
NlaIII	CATG	4 cut(s)	57, 346, 463, 832
NlaIV	GGNNCC	4 cut(s)	279, 340, 359, 630
NmuCI	GTSAC	2 cut(s)	801, 1075
PagI	TCATGA	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	746
PfeI	GAWTC	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	1147
PkrI	GCNGC	5 cut(s)	11, 259, 333, 964, 1243
PleI	GAGTC	2 cut(s)	472, 1202
PpsI	GAGTC	2 cut(s)	472, 1202
Ppu21I	YACGTR	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	849
PspGI	CCWGG	1 cut(s)	849
PspN4I	GGNNCC	4 cut(s)	279, 340, 359, 630
PspPI	GGNCC	2 cut(s)	255, 278
PstNI	CAGNNNCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	359, 705, 813
RsaNI	GTAC	3 cut(s)	358, 704, 812
RseI	CAYNNNNRTG	1 cut(s)	470
SaqAI	TTAA	5 cut(s)	246, 365, 933, 1224, 1246
SatI	GCNGC	5 cut(s)	10, 258, 332, 963, 1242
Sau3AI	GATC	3 cut(s)	462, 504, 615
Sau96I	GGNCC	2 cut(s)	255, 278
SchI	GAGTC	2 cut(s)	472, 1203
ScrFI	CCNGG	3 cut(s)	276, 292, 851
SduI	GDGCHC	1 cut(s)	633
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	1058
SmiMI	CAYNNNNRTG	1 cut(s)	470
Sse9I	AATT	7 cut(s)	60, 351, 528, 708, 754, 935, 1221
SseBI	AGGCCT	1 cut(s)	746
SsiI	CCGC	1 cut(s)	258
StuI	AGGCCT	1 cut(s)	746
StyD4I	CCNGG	3 cut(s)	274, 290, 849
StyI	CCWWGG	2 cut(s)	970, 1236
TaaI	ACNGT	6 cut(s)	119, 427, 457, 598, 643, 1097
TaiI	ACGT	1 cut(s)	808
TaqI	TCGA	2 cut(s)	58, 322
TaqII	GACCGA	1 cut(s)	514
TasI	AATT	7 cut(s)	60, 351, 528, 708, 754, 935, 1221
TatI	WGTACW	1 cut(s)	811
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	5 cut(s)	246, 365, 933, 1224, 1246
Tru9I	TTAA	5 cut(s)	246, 365, 933, 1224, 1246
TscAI	CASTG	3 cut(s)	149, 543, 879
TseFI	GTSAC	2 cut(s)	801, 1075
TseI	GCWGC	4 cut(s)	9, 331, 962, 1241
Tsp45I	GTSAC	2 cut(s)	801, 1075
TspDTI	ATGAA	5 cut(s)	59, 591, 817, 883, 936
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	3 cut(s)	149, 543, 879
XapI	RAATTY	3 cut(s)	60, 351, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.