Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013947

Physical Location & Seq

Genomic Coordinates Reverse (-)

81041447 .. 81044100

Gene Structure 2654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022114

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCAGAGCAGTGTCATTGCTCTGTCTCCTTCCACCCCATTTCTAAAACCTCCATGTCGAATCCCGAGCTGTAAACTCTCTCAACTTTCAGCCTCAACTTGTTTTACACAACTTCACCGTATCAGTTCTATTCATAGACTTTACTGGCAAACAGCTTTTGGCACGTTTTCTACTTCTTCCTCTTTCAATACTGAAATCCCTGCCTCCTTCCTTTCCTCAAACCGATGTTATGATAGTTTGAAGGTCAGGGCTGCTCAGGCTGCTGCTCCGGGGCCCGAGAGCACCGGGGAGGCTTCAGAATCAAGTGGATTGGCTTCAACTTTGCAGCTCGGTGCCATGTTTGGAATTTGGTACCTTTTGAACATTTACTTCAACATCTACAACAAACAGGTTCTGAAAGTCTATCCATTTCCAGCCACGGTTACAGCCTTCCAGTTTGCCTGTGGGACTGTCATGATTATCCTGATGTGGGCTCTAAACCTCTACTCCAGACCGAAGATCACTCGCTCACAGCTTGCAGCAATTCTACCACTGGCTGTGGCGCACACGATGGGAAACCTATTGACCAACGTCAGTATCGGGAAAGTTGCTGTTTCATTCACTCACACGATCAAAGCTATGGAGCCCTTCTTCACTGTCCTATTCTCAGCCCTCTTGATTGGCTTTGGTAGTGCAATGGCTTCTAATATCACTAACCAGTCGCGTAATGTACTCAGCAAGAAGTTAATGGTCAAGAAAGAGGAATCTTTGGACAATATCAATCTCTTCTCAGTGATAACCATCATTTCTTTCATACTGTTGCTTCCTTCTGCTATTCTCTTGGAAGGCGTTAAATTTAGTCCTTCATACCTACAATCCGCTGCAAACCAAGGATTGAACATCAAAGAGTTGTGTGTGAGATCACTTCTGGCTGGTTTCTGCTTCCACACTTACCAGCAGGTCTCGTACATGATACTGCAGATGGTATCACCAGTCACACATGCAGTAGGGAACTGTGTGAAGCGAGTGGTGGTTATAGTTTCCTCAGTCATCTTCTTCCAAACACCGGTCTCACCCATAAACTCCCTTGGAACTGCTATTGCTCTTGCCGGAGTCTTCTTATATTCGAGAGCCAAGAGAATTAAGCCAAAGCCCAAGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009670 GO:0015075 GO:0015121 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022804 GO:0022857 GO:0034220 GO:0035436 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

382

Amino Acids

41.47

Weight (kDa)

9.82

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	108 - 221	1.6e-44	Triose-phosphate Transporter family
TPT	PF03151	219 - 369	5.9e-57	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01550 AT3G01550
fragaria_vesca	FvH4_6g51010 FvH4_6g51010
malus_domestica	MD09G1029600.v1.1
prunus_persica	Prupe.3G287800_v2.0.a1 Prupe.3G287800_v2.0.a1
pyrus_communis	pycom111g02360
rosa_chinensis	RchiOBHm_Chr2g0172541
rosa_laevigata	RLG00000022114
rosa_multiflora	Rmu_sc0000912.1_g000007
rosa_rugosa	Rorug02G0559700.1
rosa_samantha	Rh2AG635800 Rh2BG649200 Rh2CG616000 Rh2DG663600
rosa_wichuraiana	Rw2G052600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	928
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	2 cut(s)	332, 351
AccII	CGCG	1 cut(s)	703
AciI	CCGC	1 cut(s)	858
AcsI	RAATTY	2 cut(s)	345, 833
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	3 cut(s)	353, 711, 947
AfiI	CCNNNNNNNGG	2 cut(s)	469, 1045
AgeI	ACCGGT	1 cut(s)	1045
AgsI	TTSAA	6 cut(s)	187, 241, 318, 361, 373, 877
AluBI	AGCT	5 cut(s)	69, 155, 328, 514, 617
AluI	AGCT	5 cut(s)	69, 155, 328, 514, 617
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	3 cut(s)	30, 946, 1054
AlwNI	CAGNNNCTG	1 cut(s)	394
Ama87I	CYCGRG	2 cut(s)	64, 275
AoxI	GGCC	1 cut(s)	272
ApaI	GGGCCC	1 cut(s)	276
ApeKI	GCWGC	7 cut(s)	251, 260, 263, 325, 518, 860, 1139
ApoI	RAATTY	2 cut(s)	345, 833
AsiGI	ACCGGT	1 cut(s)	1045
Asp718I	GGTACC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	2 cut(s)	272, 273
AsuC2I	CCSGG	2 cut(s)	270, 286
AsuHPI	GGTGA	3 cut(s)	107, 960, 1044
AvaI	CYCGRG	2 cut(s)	64, 275
BaeGI	GKGCMC	1 cut(s)	276
BaeI	ACNNNNGTAYC	2 cut(s)	559, 592
BanI	GGYRCC	2 cut(s)	332, 351
BanII	GRGCYC	3 cut(s)	276, 475, 627
BbsI	GAAGAC	1 cut(s)	1087
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	7 cut(s)	238, 247, 250, 337, 530, 847, 1126
BccI	CCATC	3 cut(s)	544, 788, 955
BcnI	CCSGG	2 cut(s)	270, 286
BcoDI	GTCTC	3 cut(s)	30, 946, 1054
BfmI	CTRYAG	1 cut(s)	956
BfuAI	ACCTGC	1 cut(s)	928
BisI	GCNGC	7 cut(s)	252, 261, 264, 326, 519, 861, 1140
BlsI	GCNGC	7 cut(s)	253, 262, 265, 327, 520, 862, 1141
Bme1390I	CCNGG	2 cut(s)	270, 286
BmeT110I	CYCGRG	2 cut(s)	64, 275
BmgT120I	GGNCC	2 cut(s)	272, 273
BmiI	GGNNCC	5 cut(s)	273, 274, 334, 353, 624
BmrFI	CCNGG	2 cut(s)	270, 286
BoxI	GACNNNNGTC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	1087
BpmI	CTGGAG	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	255
BpuMI	CCSGG	2 cut(s)	270, 286
BsaBI	GATNNNNATC	1 cut(s)	779
BsaI	GGTCTC	2 cut(s)	946, 1054
BsaJI	CCNNGG	6 cut(s)	269, 285, 417, 868, 1066, 1134
BsaWI	WCCGGW	1 cut(s)	1045
BsaXI	ACNNNNNCTCC	2 cut(s)	470, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	469, 1045
Bse118I	RCCGGY	1 cut(s)	1045
Bse1I	ACTGG	5 cut(s)	149, 433, 537, 697, 971
Bse3DI	GCAATG	2 cut(s)	15, 681
Bse8I	GATNNNNATC	1 cut(s)	779
BseDI	CCNNGG	6 cut(s)	269, 285, 417, 868, 1066, 1134
BseJI	GATNNNNATC	1 cut(s)	779
BseLI	CCNNNNNNNGG	2 cut(s)	469, 1045
BseMI	GCAATG	2 cut(s)	15, 681
BseMII	CTCAG	5 cut(s)	269, 660, 727, 783, 1038
BseNI	ACTGG	5 cut(s)	149, 433, 537, 697, 971
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	7 cut(s)	238, 247, 250, 337, 530, 847, 1126
Bsh1236I	CGCG	1 cut(s)	703
BshFI	GGCC	1 cut(s)	274
BshNI	GGYRCC	2 cut(s)	332, 351
BshTI	ACCGGT	1 cut(s)	1045
BsiHKAI	GWGCWC	1 cut(s)	284
BsiHKCI	CYCGRG	2 cut(s)	64, 275
BsiSI	CCGG	4 cut(s)	269, 285, 1046, 1089
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	469, 1045
BsmAI	GTCTC	3 cut(s)	30, 946, 1054
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	1 cut(s)	274
Bso31I	GGTCTC	2 cut(s)	946, 1054
BsoBI	CYCGRG	2 cut(s)	64, 275
Bsp120I	GGGCCC	1 cut(s)	272
Bsp1286I	GDGCHC	4 cut(s)	276, 284, 475, 627
Bsp143I	GATC	3 cut(s)	498, 609, 899
BspACI	CCGC	1 cut(s)	858
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	5 cut(s)	268, 659, 726, 782, 1037
BspFNI	CGCG	1 cut(s)	703
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	5 cut(s)	273, 274, 334, 353, 624
BspMAI	CTGCAG	1 cut(s)	960
BspMI	ACCTGC	1 cut(s)	928
BspT107I	GGYRCC	2 cut(s)	332, 351
BspTNI	GGTCTC	2 cut(s)	946, 1054
BsrDI	GCAATG	2 cut(s)	15, 681
BsrFI	RCCGGY	1 cut(s)	1045
BsrI	ACTGG	5 cut(s)	149, 433, 537, 697, 971
BssAI	RCCGGY	1 cut(s)	1045
BssECI	CCNNGG	6 cut(s)	269, 285, 417, 868, 1066, 1134
BssMI	GATC	3 cut(s)	498, 609, 899
BssT1I	CCWWGG	3 cut(s)	868, 1066, 1134
Bst4CI	ACNGT	6 cut(s)	119, 421, 451, 637, 798, 995
Bst6I	CTCTTC	1 cut(s)	770
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	5 cut(s)	255, 646, 713, 769, 1024
BstDSI	CCRYGG	1 cut(s)	417
BstFNI	CGCG	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	3 cut(s)	501, 612, 902
BstMAI	GTCTC	3 cut(s)	30, 946, 1054
BstMBI	GATC	3 cut(s)	498, 609, 899
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 260
BstNSI	RCATGY	1 cut(s)	983
BstPAI	GACNNNNGTC	1 cut(s)	569
BstSCI	CCNGG	2 cut(s)	268, 284
BstSFI	CTRYAG	1 cut(s)	956
BstSLI	GKGCMC	1 cut(s)	276
BstUI	CGCG	1 cut(s)	703
BstV1I	GCAGC	7 cut(s)	238, 247, 250, 337, 530, 847, 1126
BstV2I	GAAGAC	1 cut(s)	1087
BsuRI	GGCC	1 cut(s)	274
BtgI	CCRYGG	1 cut(s)	417
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	4 cut(s)	16, 530, 633, 777
BveI	ACCTGC	1 cut(s)	928
Cac8I	GCNNGC	1 cut(s)	516
CaiI	CAGNNNCTG	1 cut(s)	394
CciI	TCATGA	1 cut(s)	453
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	1 cut(s)	1045
Cfr13I	GGNCC	2 cut(s)	272, 273
Csp6I	GTAC	3 cut(s)	352, 710, 946
CspAI	ACCGGT	1 cut(s)	1045
CviAII	CATG	5 cut(s)	54, 337, 454, 949, 980
CviQI	GTAC	3 cut(s)	352, 710, 946
DdeI	CTNAG	5 cut(s)	255, 646, 713, 769, 1024
DpnI	GATC	3 cut(s)	500, 611, 901
DpnII	GATC	3 cut(s)	498, 609, 899
Eam1104I	CTCTTC	1 cut(s)	770
EarI	CTCTTC	1 cut(s)	770
Eco130I	CCWWGG	3 cut(s)	868, 1066, 1134
Eco24I	GRGCYC	3 cut(s)	276, 475, 627
Eco31I	GGTCTC	2 cut(s)	946, 1054
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	2 cut(s)	64, 275
EcoO109I	RGGNCCY	1 cut(s)	272
EcoT14I	CCWWGG	3 cut(s)	868, 1066, 1134
EcoT38I	GRGCYC	3 cut(s)	276, 475, 627
ErhI	CCWWGG	3 cut(s)	868, 1066, 1134
FaeI	CATG	5 cut(s)	57, 340, 457, 952, 983
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	5 cut(s)	53, 336, 453, 948, 979
Fnu4HI	GCNGC	7 cut(s)	252, 261, 264, 326, 519, 861, 1140
FriOI	GRGCYC	3 cut(s)	276, 475, 627
Fsp4HI	GCNGC	7 cut(s)	252, 261, 264, 326, 519, 861, 1140
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	7 cut(s)	252, 261, 264, 326, 519, 861, 1140
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	4 cut(s)	269, 285, 1046, 1089
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	5 cut(s)	57, 340, 457, 952, 983
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HinfI	GANTC	4 cut(s)	60, 299, 743, 1092
HpaII	CCGG	4 cut(s)	269, 285, 1046, 1089
HphI	GGTGA	3 cut(s)	107, 960, 1044
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	298, 396
Hpy188III	TCNNGA	8 cut(s)	64, 454, 463, 489, 580, 655, 733, 1107
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	8 cut(s)	39, 217, 235, 439, 637, 816, 818, 852
HpyCH4III	ACNGT	6 cut(s)	119, 421, 451, 637, 798, 995
HpyCH4IV	ACGT	2 cut(s)	164, 570
HpyCH4V	TGCA	7 cut(s)	4, 325, 518, 674, 863, 958, 983
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 260
HpyF3I	CTNAG	5 cut(s)	255, 646, 713, 769, 1024
HpySE526I	ACGT	2 cut(s)	164, 570
Hsp92II	CATG	5 cut(s)	57, 340, 457, 952, 983
HspAI	GCGC	1 cut(s)	542
KpnI	GGTACC	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	498, 609, 899
LmnI	GCTCC	2 cut(s)	271, 622
Lsp1109I	GCAGC	7 cut(s)	238, 247, 250, 337, 530, 847, 1126
MaeII	ACGT	2 cut(s)	164, 570
MaeIII	GTNAC	2 cut(s)	421, 973
MalI	GATC	3 cut(s)	500, 611, 901
MboI	GATC	3 cut(s)	498, 609, 899
MboII	GAAGA	7 cut(s)	168, 508, 622, 757, 1024, 1027, 1087
MhlI	GDGCHC	4 cut(s)	276, 284, 475, 627
MluCI	AATT	4 cut(s)	345, 522, 833, 1119
MlyI	GAGTC	1 cut(s)	1101
MseI	TTAA	3 cut(s)	725, 831, 1122
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	4 cut(s)	269, 285, 1046, 1089
MspR9I	CCNGG	2 cut(s)	270, 286
MvnI	CGCG	1 cut(s)	703
MwoI	GCNNNNNNNGC	2 cut(s)	257, 260
NciI	CCSGG	2 cut(s)	270, 286
NdeII	GATC	3 cut(s)	498, 609, 899
NlaIII	CATG	5 cut(s)	57, 340, 457, 952, 983
NlaIV	GGNNCC	5 cut(s)	273, 274, 334, 353, 624
NmuCI	GTSAC	1 cut(s)	973
NspI	RCATGY	1 cut(s)	983
PagI	TCATGA	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	60, 299, 743
PinAI	ACCGGT	1 cut(s)	1045
PkrI	GCNGC	7 cut(s)	253, 262, 265, 327, 520, 862, 1141
PleI	GAGTC	1 cut(s)	1100
PpsI	GAGTC	1 cut(s)	1100
PshAI	GACNNNNGTC	1 cut(s)	569
PspN4I	GGNNCC	5 cut(s)	273, 274, 334, 353, 624
PspOMI	GGGCCC	1 cut(s)	272
PspPI	GGNCC	2 cut(s)	272, 273
PstI	CTGCAG	1 cut(s)	960
PstNI	CAGNNNCTG	1 cut(s)	394
RsaI	GTAC	3 cut(s)	353, 711, 947
RsaNI	GTAC	3 cut(s)	352, 710, 946
SaqAI	TTAA	3 cut(s)	725, 831, 1122
SatI	GCNGC	7 cut(s)	252, 261, 264, 326, 519, 861, 1140
Sau3AI	GATC	3 cut(s)	498, 609, 899
Sau96I	GGNCC	2 cut(s)	272, 273
SchI	GAGTC	1 cut(s)	1101
ScrFI	CCNGG	2 cut(s)	270, 286
SduI	GDGCHC	4 cut(s)	276, 284, 475, 627
SfcI	CTRYAG	1 cut(s)	956
Sse9I	AATT	4 cut(s)	345, 522, 833, 1119
SsiI	CCGC	1 cut(s)	858
StyD4I	CCNGG	2 cut(s)	268, 284
StyI	CCWWGG	3 cut(s)	868, 1066, 1134
TaaI	ACNGT	6 cut(s)	119, 421, 451, 637, 798, 995
TaiI	ACGT	2 cut(s)	167, 573
TaqI	TCGA	2 cut(s)	58, 1106
TaqII	GACCGA	1 cut(s)	508
TasI	AATT	4 cut(s)	345, 522, 833, 1119
TatI	WGTACW	1 cut(s)	709
TfiI	GAWTC	3 cut(s)	60, 299, 743
Tru1I	TTAA	3 cut(s)	725, 831, 1122
Tru9I	TTAA	3 cut(s)	725, 831, 1122
TscAI	CASTG	4 cut(s)	16, 537, 640, 777
TseFI	GTSAC	1 cut(s)	973
TseI	GCWGC	7 cut(s)	251, 260, 263, 325, 518, 860, 1139
Tsp45I	GTSAC	1 cut(s)	973
TspDTI	ATGAA	4 cut(s)	122, 585, 781, 834
TspRI	CASTG	4 cut(s)	16, 537, 640, 777
XapI	RAATTY	2 cut(s)	345, 833
XceI	RCATGY	1 cut(s)	983
XcmI	CCANNNNNNNNNTGG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.