Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013947

Physical Location & Seq

Genomic Coordinates Reverse (-)

25947060 .. 25949251

Gene Structure 2192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G287800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

GGCACTGCGCTTACTCTGTCTCCTTCCACCTCATTTCTCAAACCTCCGTGTCGAAACCCTATCCCTAAACCCTCTCAACTTTCGGCTTCAACGTCTTTGATTCAACTTGACAATCTCACTTGTGTCCATAGGCTCTCATGGCAAACACTTTTTTACACAATTTCTTCTTCATCTTCTTCTTTTCCGAGCTTCAATAAAATCTCTGCTTCCTTCCTTTTCTCGAGTCAAAGATATGATAATTTGAAGGTCAGGGCTGCTCCCGAGACTGCTGAAGAGGCTTCGAATCCGAGCAGGATGGTTAAGACTTTGCAGCTTGGTGCTTTGTTTGGAATTTGGTACCTTTTGAATATTTACTTCAACATCTACAACAAACAGGTTCTGAAAGTCTATCCGTTTCCAGCAACGATGACGGCGTTTCAGTTGGGCTGCGGGACTATGATGATTTTGTTGATGTGGGCTTTTAACCTCTACCCCAAGCCAAACATCACTCGCTCACAGCTTGGAGCAATTGTACCGCTGGCTGTGGCACATACAATGGGCAGCCTATTGACTAACATCAGTCTTGGGAAAGTTGCCGTTTCCTTCACTCACACAATCAAAGCCATGGAGCCCTTCTTCACGGTCCTGTTCTCTGCCCTCTTACTTGCAGAGAGGCCGACTGTCTGGGTGGTTTCTTCTCTTGTGCCAATTGTAGGTGGAGTGGCATTGGCATCCTTCACCGAGGCCTCTTTTAATTGGATTGGTTTCAGCAGCGCAATGGCCTCTAATCTTACTAACCAATCGCGTAATGTACTCAGCAAGAAGCTCATGGTTAAGGTGGAATCTTTGGACAATATCAATCTCTTCTCAGTGATAACTATCATTTCCTTCATCCTGTTGGTTCCTTCGGCGATTCTCTTGGAAGGCGTTAAATTTACTCCTGCATACCTGCATTCAGCTGCAAGCCAAGGATTGAATGTCAGAGAGTTATGCGTGAGATCTCTTCTGGCTGGGTTCTGCTTCCACACTTATCAGCAGGTGTCTTATAAGATACTGGAGATGGTATCGCCGGTGACTCACTCAGTAGGGAACTGTGTGAAGCGTGTGGTGGTGATAGTCTCCTCAGTCATCTTCTTCCAAACACCCGTCTCGCCCATAAATTCTCTCGGGACTGGTCTGGCTCTTGCTGGAGTCGTCTTGTATTCAAGAGCAAAGACAATAAAGCCAAAGCCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009670 GO:0015075 GO:0015121 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022804 GO:0022857 GO:0034220 GO:0035436 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

406

Amino Acids

44.2

Weight (kDa)

9.81

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01550 AT3G01550
fragaria_vesca	FvH4_6g51010 FvH4_6g51010
malus_domestica	MD09G1029600.v1.1
prunus_persica	Prupe.3G287800_v2.0.a1 Prupe.3G287800_v2.0.a1
pyrus_communis	pycom111g02360
rosa_chinensis	RchiOBHm_Chr2g0172541
rosa_laevigata	RLG00000022114
rosa_multiflora	Rmu_sc0000912.1_g000007
rosa_rugosa	Rorug02G0559700.1
rosa_samantha	Rh2AG635800 Rh2BG649200 Rh2CG616000 Rh2DG663600
rosa_wichuraiana	Rw2G052600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1026
AarI	CACCTGC	1 cut(s)	1006
Acc36I	ACCTGC	2 cut(s)	936, 1006
Acc65I	GGTACC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	336
AccII	CGCG	1 cut(s)	784
AciI	CCGC	2 cut(s)	429, 515
AcsI	RAATTY	3 cut(s)	330, 911, 1138
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	3 cut(s)	338, 513, 792
AfiI	CCNNNNNNNGG	1 cut(s)	692
AgsI	TTSAA	8 cut(s)	90, 104, 193, 244, 346, 358, 955, 1185
AluBI	AGCT	5 cut(s)	189, 313, 499, 805, 938
AluI	AGCT	5 cut(s)	189, 313, 499, 805, 938
Alw26I	GTCTC	4 cut(s)	24, 257, 1102, 1132
AlwNI	CAGNNNCTG	1 cut(s)	379
Ama87I	CYCGRG	3 cut(s)	220, 260, 1145
AoxI	GGCC	3 cut(s)	653, 723, 759
ApeKI	GCWGC	6 cut(s)	254, 310, 426, 540, 750, 938
ApoI	RAATTY	3 cut(s)	330, 911, 1138
Asp718I	GGTACC	1 cut(s)	336
AspLEI	GCGC	2 cut(s)	10, 755
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	3 cut(s)	709, 1063, 1102
AsuII	TTCGAA	1 cut(s)	281
AvaI	CYCGRG	3 cut(s)	220, 260, 1145
AvaII	GGWCC	1 cut(s)	622
BanI	GGYRCC	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	612
BbvI	GCAGC	6 cut(s)	241, 322, 413, 552, 762, 925
BccI	CCATC	2 cut(s)	289, 1033
BceAI	ACGGC	2 cut(s)	426, 560
BcoDI	GTCTC	4 cut(s)	24, 257, 1102, 1132
BfuAI	ACCTGC	2 cut(s)	936, 1006
BglII	AGATCT	1 cut(s)	977
BisI	GCNGC	6 cut(s)	255, 311, 427, 541, 751, 939
BlsI	GCNGC	6 cut(s)	256, 312, 428, 542, 752, 940
Bme18I	GGWCC	1 cut(s)	622
BmeT110I	CYCGRG	3 cut(s)	220, 260, 1145
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	3 cut(s)	338, 609, 882
BmsI	GCATC	1 cut(s)	719
BpmI	CTGGAG	2 cut(s)	1055, 1188
Bpu14I	TTCGAA	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	857
BsaJI	CCNNGG	3 cut(s)	603, 720, 946
BsaXI	ACNNNNNCTCC	3 cut(s)	34, 495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	692
Bse118I	RCCGGY	1 cut(s)	1048
Bse1I	ACTGG	2 cut(s)	1038, 1156
Bse3DI	GCAATG	1 cut(s)	762
Bse8I	GATNNNNATC	1 cut(s)	857
BseDI	CCNNGG	3 cut(s)	603, 720, 946
BseGI	GGATG	3 cut(s)	300, 710, 870
BseJI	GATNNNNATC	1 cut(s)	857
BseLI	CCNNNNNNNGG	1 cut(s)	692
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	4 cut(s)	808, 861, 1074, 1116
BseNI	ACTGG	2 cut(s)	1038, 1156
BseRI	GAGGAG	1 cut(s)	1090
BseXI	GCAGC	6 cut(s)	241, 322, 413, 552, 762, 925
BseYI	CCCAGC	1 cut(s)	989
Bsh1236I	CGCG	1 cut(s)	784
BshFI	GGCC	3 cut(s)	655, 725, 761
BshNI	GGYRCC	1 cut(s)	336
BsiHKCI	CYCGRG	3 cut(s)	220, 260, 1145
BsiSI	CCGG	1 cut(s)	1049
BslFI	GGGAC	2 cut(s)	445, 1162
BslI	CCNNNNNNNGG	1 cut(s)	692
BsmAI	GTCTC	4 cut(s)	24, 257, 1102, 1132
BsmBI	CGTCTC	1 cut(s)	1132
BsmFI	GGGAC	2 cut(s)	445, 1162
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	3 cut(s)	655, 725, 761
BsoBI	CYCGRG	3 cut(s)	220, 260, 1145
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	1 cut(s)	977
Bsp19I	CCATGG	1 cut(s)	603
BspACI	CCGC	2 cut(s)	429, 515
BspANI	GGCC	3 cut(s)	655, 725, 761
BspCNI	CTCAG	4 cut(s)	807, 860, 1073, 1115
BspFNI	CGCG	1 cut(s)	784
BspLI	GGNNCC	3 cut(s)	338, 609, 882
BspMI	ACCTGC	2 cut(s)	936, 1006
BspT104I	TTCGAA	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	762
BsrFI	RCCGGY	1 cut(s)	1048
BsrI	ACTGG	2 cut(s)	1038, 1156
BssAI	RCCGGY	1 cut(s)	1048
BssECI	CCNNGG	3 cut(s)	603, 720, 946
BssMI	GATC	1 cut(s)	977
BssT1I	CCWWGG	2 cut(s)	603, 946
Bst4CI	ACNGT	3 cut(s)	622, 661, 1073
Bst6I	CTCTTC	3 cut(s)	267, 848, 987
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	519, 943
BstDEI	CTNAG	4 cut(s)	794, 847, 1060, 1102
BstDSI	CCRYGG	1 cut(s)	603
BstF5I	GGATG	3 cut(s)	300, 710, 870
BstFNI	CGCG	1 cut(s)	784
BstHHI	GCGC	2 cut(s)	10, 755
BstKTI	GATC	1 cut(s)	980
BstMAI	GTCTC	4 cut(s)	24, 257, 1102, 1132
BstMBI	GATC	1 cut(s)	977
BstMWI	GCNNNNNNNGC	2 cut(s)	139, 275
BstUI	CGCG	1 cut(s)	784
BstV1I	GCAGC	6 cut(s)	241, 322, 413, 552, 762, 925
BstX2I	RGATCY	1 cut(s)	977
BstYI	RGATCY	1 cut(s)	977
BsuRI	GGCC	3 cut(s)	655, 725, 761
BtgI	CCRYGG	1 cut(s)	603
BtsCI	GGATG	3 cut(s)	300, 710, 870
BtsIMutI	CAGTG	1 cut(s)	855
BveI	ACCTGC	2 cut(s)	936, 1006
Cac8I	GCNNGC	2 cut(s)	519, 943
CaiI	CAGNNNCTG	1 cut(s)	379
CfoI	GCGC	2 cut(s)	10, 755
Cfr10I	RCCGGY	1 cut(s)	1048
Cfr13I	GGNCC	1 cut(s)	622
Csp6I	GTAC	3 cut(s)	337, 512, 791
CviAII	CATG	3 cut(s)	138, 604, 808
CviQI	GTAC	3 cut(s)	337, 512, 791
DdeI	CTNAG	4 cut(s)	794, 847, 1060, 1102
DpnI	GATC	1 cut(s)	979
DpnII	GATC	1 cut(s)	977
Eam1104I	CTCTTC	3 cut(s)	267, 848, 987
EarI	CTCTTC	3 cut(s)	267, 848, 987
Eco130I	CCWWGG	2 cut(s)	603, 946
Eco147I	AGGCCT	1 cut(s)	725
Eco24I	GRGCYC	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	622
Eco57I	CTGAAG	1 cut(s)	291
Eco88I	CYCGRG	3 cut(s)	220, 260, 1145
EcoT14I	CCWWGG	2 cut(s)	603, 946
EcoT38I	GRGCYC	1 cut(s)	612
ErhI	CCWWGG	2 cut(s)	603, 946
Esp3I	CGTCTC	1 cut(s)	1132
FaeI	CATG	3 cut(s)	141, 607, 811
FaqI	GGGAC	2 cut(s)	445, 1162
FatI	CATG	3 cut(s)	137, 603, 807
FauI	CCCGC	1 cut(s)	422
Fnu4HI	GCNGC	6 cut(s)	255, 311, 427, 541, 751, 939
FokI	GGATG	3 cut(s)	307, 697, 857
FriOI	GRGCYC	1 cut(s)	612
Fsp4HI	GCNGC	6 cut(s)	255, 311, 427, 541, 751, 939
GlaI	GCGC	2 cut(s)	9, 754
GluI	GCNGC	6 cut(s)	255, 311, 427, 541, 751, 939
GsaI	CCCAGC	1 cut(s)	993
GsuI	CTGGAG	2 cut(s)	1055, 1188
HaeIII	GGCC	3 cut(s)	655, 725, 761
HapII	CCGG	1 cut(s)	1049
HhaI	GCGC	2 cut(s)	10, 755
Hin1II	CATG	3 cut(s)	141, 607, 811
Hin6I	GCGC	2 cut(s)	8, 753
HinP1I	GCGC	2 cut(s)	8, 753
HinfI	GANTC	7 cut(s)	100, 223, 283, 821, 892, 1054, 1170
HpaII	CCGG	1 cut(s)	1049
HphI	GGTGA	3 cut(s)	709, 1063, 1102
Hpy188I	TCNGA	4 cut(s)	186, 288, 381, 962
Hpy188III	TCNNGA	4 cut(s)	220, 260, 1147, 1185
HpyAV	CCTTC	9 cut(s)	33, 220, 238, 592, 622, 724, 877, 894, 896
HpyCH4III	ACNGT	3 cut(s)	622, 661, 1073
HpyCH4IV	ACGT	1 cut(s)	92
HpyCH4V	TGCA	5 cut(s)	310, 647, 923, 931, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	139, 275
HpyF3I	CTNAG	4 cut(s)	794, 847, 1060, 1102
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	3 cut(s)	141, 607, 811
HspAI	GCGC	2 cut(s)	8, 753
KpnI	GGTACC	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	977
LmnI	GCTCC	3 cut(s)	262, 503, 607
Lsp1109I	GCAGC	6 cut(s)	241, 322, 413, 552, 762, 925
LweI	GCATC	1 cut(s)	719
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	1051
MalI	GATC	1 cut(s)	979
MboI	GATC	1 cut(s)	977
MfeI	CAATTG	2 cut(s)	507, 687
MflI	RGATCY	1 cut(s)	977
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	9 cut(s)	159, 238, 330, 507, 687, 733, 911, 1138, 1213
MlyI	GAGTC	3 cut(s)	232, 1048, 1179
MseI	TTAA	6 cut(s)	300, 462, 732, 813, 909, 1216
MspA1I	CMGCKG	2 cut(s)	517, 938
MspI	CCGG	1 cut(s)	1049
MunI	CAATTG	2 cut(s)	507, 687
Mva1269I	GAATGC	1 cut(s)	931
MvnI	CGCG	1 cut(s)	784
MwoI	GCNNNNNNNGC	2 cut(s)	139, 275
NcoI	CCATGG	1 cut(s)	603
NdeII	GATC	1 cut(s)	977
NlaIII	CATG	3 cut(s)	141, 607, 811
NlaIV	GGNNCC	3 cut(s)	338, 609, 882
NmuCI	GTSAC	1 cut(s)	1051
NspV	TTCGAA	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	220
PaqCI	CACCTGC	1 cut(s)	1006
PceI	AGGCCT	1 cut(s)	725
PcsI	WCGNNNNNNNCGW	2 cut(s)	89, 410
PctI	GAATGC	1 cut(s)	931
PfeI	GAWTC	4 cut(s)	100, 283, 821, 892
PkrI	GCNGC	6 cut(s)	256, 312, 428, 542, 752, 940
PleI	GAGTC	3 cut(s)	231, 1048, 1178
PpsI	GAGTC	3 cut(s)	231, 1048, 1178
PsiI	TTATAA	1 cut(s)	1026
PspFI	CCCAGC	1 cut(s)	989
PspN4I	GGNNCC	3 cut(s)	338, 609, 882
PspPI	GGNCC	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	977
PvuII	CAGCTG	1 cut(s)	938
RsaI	GTAC	3 cut(s)	338, 513, 792
RsaNI	GTAC	3 cut(s)	337, 512, 791
SaqAI	TTAA	6 cut(s)	300, 462, 732, 813, 909, 1216
SatI	GCNGC	6 cut(s)	255, 311, 427, 541, 751, 939
Sau3AI	GATC	1 cut(s)	977
Sau96I	GGNCC	1 cut(s)	622
SchI	GAGTC	3 cut(s)	232, 1048, 1179
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	1 cut(s)	719
Sfr274I	CTCGAG	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	281
SgrAI	CRCCGGYG	1 cut(s)	1048
SinI	GGWCC	1 cut(s)	622
SlaI	CTCGAG	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	9 cut(s)	159, 238, 330, 507, 687, 733, 911, 1138, 1213
SseBI	AGGCCT	1 cut(s)	725
SsiI	CCGC	2 cut(s)	429, 515
SspI	AATATT	1 cut(s)	349
StuI	AGGCCT	1 cut(s)	725
StyI	CCWWGG	2 cut(s)	603, 946
TaaI	ACNGT	3 cut(s)	622, 661, 1073
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	52, 221, 281
TasI	AATT	9 cut(s)	159, 238, 330, 507, 687, 733, 911, 1138, 1213
TatI	WGTACW	1 cut(s)	790
TfiI	GAWTC	4 cut(s)	100, 283, 821, 892
Tru1I	TTAA	6 cut(s)	300, 462, 732, 813, 909, 1216
Tru9I	TTAA	6 cut(s)	300, 462, 732, 813, 909, 1216
TscAI	CASTG	1 cut(s)	855
TseFI	GTSAC	1 cut(s)	1051
TseI	GCWGC	6 cut(s)	254, 310, 426, 540, 750, 938
Tsp45I	GTSAC	1 cut(s)	1051
TspDTI	ATGAA	2 cut(s)	159, 859
TspGWI	ACGGA	2 cut(s)	36, 381
TspRI	CASTG	1 cut(s)	855
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	3 cut(s)	330, 911, 1138
XhoI	CTCGAG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.