Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013947

Physical Location & Seq

Genomic Coordinates Reverse (-)

86104624 .. 86107286

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG635800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGCAGAGCAGTGCGATTGCTCTGTCTCCTTCCACCCCATTTCTAAAACCTCCATGTCGAATCCCAAGCTGTAAACTCTCTCAACTTTCAGCCTCGACTTGTTTTACACAACTTCACCGTATCAGTTCTATTCAGAGACTTTACTGGCAAACAGCTTTTGGCACGTTTTCTACTTCTTCCTCTTTCAACGCTGAAATCCCTGCCTCCTTCCTTTCCGTAAACCGAAGTAATGATAGTTTGAAGGTCAGGGCTGCTCAGGCTGCTGCTCCGGGGCCTGAGAGTGCCGGGGAGGCTCCAGAATCAAGTGGATTGGCTCGAACTTTGCAGCTCGGTGCCATGTTTGGAATTTGGTACCTGTTGAACATTTACTTCAACATCTACAACAAACAGGTTCTGAAAGTCTATCCATTTCCAGCCACGGTTACAGCCTTTCAGTTTGCCTGTGGGACTGTCATGATTATCCTGATGTGGACTCTAAACCTCTACCCCAGACCGAAGATCACTCGCTCACAGCTTGCAGCAATTCTACCACTGGCTGTGACGCACACAATGGGAAACCTATTGACCAACATCAGTATCGGGAAAGTTGCTGTTTCATTCACTCACACGATCAAATCTATGGAGCCCTTCTTCACTGTCCTATTCTCAGCCCTCTTGCTTGCAGAGAGGCCAACTATCTGGGTGGTTTCTTCTCTTGTACCAATTGTAGGTGGAGTTGCATTGGCGTCCTTCACAGAGGCCTCTTTTAATTGGATTGGCTTTGGTAGTGCAATGGCTTCTAATATCACTAACCAGTCGCGTAATGTACTCAGCAAGAAGCTCATGGTCAAGAAAGAGGAATCTTTGGACAATATTAATCTCTTCTCAGTGATAACCATCATTTCTTTCATACTGTTGCTTCCTTCTACTATTCTCTTGGAAGGCGTTAAATTTAGTCCTTCATACCTGCAATCCGCTGCAAACCAAGGATTGAACATCAAAGAGTTGTGTGTGAGATCACTTCTGGCTGGTTTCTGCTTCCACACTTACCAGCAGGTCTCGTATATGATACTGCAGATGGTATCACCAGTCACACATGCGGTAGGGAACTGTGTGAAGCGAGTGGTGGTCATAGTCTCCTCAGTCATCTTCTTCCAAACACCGGTCTCACCCATAAACTCCCTCGGAACTGCTATGGCTCTTGCCGGAGTCTTCTTATATTCAAAAGCCAAGAGAATTAAGCCAAAGCCCAAGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009670 GO:0015075 GO:0015121 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022804 GO:0022857 GO:0034220 GO:0035436 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

413

Amino Acids

44.92

Weight (kDa)

9.87

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	108 - 401	3.9e-122	Triose-phosphate Transporter family
EamA	PF00892	127 - 243	5.4e-11	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01550 AT3G01550
fragaria_vesca	FvH4_6g51010 FvH4_6g51010
malus_domestica	MD09G1029600.v1.1
prunus_persica	Prupe.3G287800_v2.0.a1 Prupe.3G287800_v2.0.a1
pyrus_communis	pycom111g02360
rosa_chinensis	RchiOBHm_Chr2g0172541
rosa_laevigata	RLG00000022114
rosa_multiflora	Rmu_sc0000912.1_g000007
rosa_rugosa	Rorug02G0559700.1
rosa_samantha	Rh2AG635800 Rh2BG649200 Rh2CG616000 Rh2DG663600
rosa_wichuraiana	Rw2G052600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	954, 1024
Acc65I	GGTACC	1 cut(s)	351
AccB1I	GGYRCC	2 cut(s)	332, 351
AccII	CGCG	1 cut(s)	799
AciI	CCGC	2 cut(s)	954, 1079
AcsI	RAATTY	2 cut(s)	345, 929
AcyI	GRCGYC	1 cut(s)	725
AfaI	GTAC	3 cut(s)	353, 699, 807
AfiI	CCNNNNNNNGG	2 cut(s)	707, 1141
AgeI	ACCGGT	1 cut(s)	1141
AgsI	TTSAA	6 cut(s)	187, 241, 361, 373, 973, 1203
AluBI	AGCT	5 cut(s)	69, 155, 328, 514, 820
AluI	AGCT	5 cut(s)	69, 155, 328, 514, 820
Alw26I	GTCTC	5 cut(s)	30, 130, 1042, 1120, 1150
AlwNI	CAGNNNCTG	1 cut(s)	394
AoxI	GGCC	3 cut(s)	272, 668, 738
ApeKI	GCWGC	7 cut(s)	251, 260, 263, 325, 518, 956, 1235
ApoI	RAATTY	2 cut(s)	345, 929
AseI	ATTAAT	1 cut(s)	855
AsiGI	ACCGGT	1 cut(s)	1141
Asp718I	GGTACC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	2 cut(s)	270, 286
AsuHPI	GGTGA	3 cut(s)	107, 1056, 1140
BaeI	ACNNNNGTAYC	2 cut(s)	559, 592
BanI	GGYRCC	2 cut(s)	332, 351
BanII	GRGCYC	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	1183
BbvI	GCAGC	7 cut(s)	238, 247, 250, 337, 530, 943, 1222
BccI	CCATC	2 cut(s)	884, 1051
BcnI	CCSGG	2 cut(s)	270, 286
BcoDI	GTCTC	5 cut(s)	30, 130, 1042, 1120, 1150
BfmI	CTRYAG	1 cut(s)	1052
BfuAI	ACCTGC	2 cut(s)	954, 1024
BglI	GCCNNNNNGGC	1 cut(s)	290
BisI	GCNGC	7 cut(s)	252, 261, 264, 326, 519, 957, 1236
BlsI	GCNGC	7 cut(s)	253, 262, 265, 327, 520, 958, 1237
Bme1390I	CCNGG	2 cut(s)	270, 286
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	5 cut(s)	273, 294, 334, 353, 624
BmrFI	CCNGG	2 cut(s)	270, 286
BpiI	GAAGAC	1 cut(s)	1183
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	255
BpuMI	CCSGG	2 cut(s)	270, 286
BsaBI	GATNNNNATC	1 cut(s)	875
BsaHI	GRCGYC	1 cut(s)	725
BsaI	GGTCTC	2 cut(s)	1042, 1150
BsaJI	CCNNGG	6 cut(s)	269, 285, 417, 964, 1162, 1230
BsaWI	WCCGGW	1 cut(s)	1141
Bsc4I	CCNNNNNNNGG	2 cut(s)	707, 1141
Bse118I	RCCGGY	1 cut(s)	1141
Bse1I	ACTGG	4 cut(s)	149, 537, 793, 1067
Bse3DI	GCAATG	1 cut(s)	777
Bse8I	GATNNNNATC	1 cut(s)	875
BseDI	CCNNGG	6 cut(s)	269, 285, 417, 964, 1162, 1230
BseJI	GATNNNNATC	1 cut(s)	875
BseLI	CCNNNNNNNGG	2 cut(s)	707, 1141
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	6 cut(s)	267, 269, 660, 823, 879, 1134
BseNI	ACTGG	4 cut(s)	149, 537, 793, 1067
BseRI	GAGGAG	1 cut(s)	1108
BseXI	GCAGC	7 cut(s)	238, 247, 250, 337, 530, 943, 1222
Bsh1236I	CGCG	1 cut(s)	799
BshFI	GGCC	3 cut(s)	274, 670, 740
BshNI	GGYRCC	2 cut(s)	332, 351
BshTI	ACCGGT	1 cut(s)	1141
BsiSI	CCGG	4 cut(s)	269, 285, 1142, 1185
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	2 cut(s)	707, 1141
BsmAI	GTCTC	5 cut(s)	30, 130, 1042, 1120, 1150
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	3 cut(s)	274, 670, 740
Bso31I	GGTCTC	2 cut(s)	1042, 1150
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp143I	GATC	3 cut(s)	498, 609, 995
BspACI	CCGC	2 cut(s)	954, 1079
BspANI	GGCC	3 cut(s)	274, 670, 740
BspCNI	CTCAG	6 cut(s)	268, 268, 659, 822, 878, 1133
BspFNI	CGCG	1 cut(s)	799
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	5 cut(s)	273, 294, 334, 353, 624
BspMAI	CTGCAG	1 cut(s)	1056
BspMI	ACCTGC	2 cut(s)	954, 1024
BspT107I	GGYRCC	2 cut(s)	332, 351
BspTNI	GGTCTC	2 cut(s)	1042, 1150
BsrDI	GCAATG	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	1141
BsrI	ACTGG	4 cut(s)	149, 537, 793, 1067
BssAI	RCCGGY	1 cut(s)	1141
BssECI	CCNNGG	6 cut(s)	269, 285, 417, 964, 1162, 1230
BssMI	GATC	3 cut(s)	498, 609, 995
BssNI	GRCGYC	1 cut(s)	725
BssT1I	CCWWGG	2 cut(s)	964, 1230
Bst4CI	ACNGT	6 cut(s)	119, 421, 451, 637, 894, 1091
Bst6I	CTCTTC	1 cut(s)	866
BstACI	GRCGYC	1 cut(s)	725
BstC8I	GCNNGC	2 cut(s)	516, 660
BstDEI	CTNAG	6 cut(s)	255, 276, 646, 809, 865, 1120
BstDSI	CCRYGG	1 cut(s)	417
BstFNI	CGCG	1 cut(s)	799
BstKTI	GATC	3 cut(s)	501, 612, 998
BstMAI	GTCTC	5 cut(s)	30, 130, 1042, 1120, 1150
BstMBI	GATC	3 cut(s)	498, 609, 995
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 260, 290
BstNSI	RCATGY	1 cut(s)	1079
BstSCI	CCNGG	2 cut(s)	268, 284
BstSFI	CTRYAG	1 cut(s)	1052
BstUI	CGCG	1 cut(s)	799
BstV1I	GCAGC	7 cut(s)	238, 247, 250, 337, 530, 943, 1222
BstV2I	GAAGAC	1 cut(s)	1183
BstXI	CCANNNNNNTGG	1 cut(s)	678
BsuRI	GGCC	3 cut(s)	274, 670, 740
BtgI	CCRYGG	1 cut(s)	417
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	4 cut(s)	16, 530, 633, 873
BveI	ACCTGC	2 cut(s)	954, 1024
Cac8I	GCNNGC	2 cut(s)	516, 660
CaiI	CAGNNNCTG	1 cut(s)	394
CciI	TCATGA	1 cut(s)	453
Cfr10I	RCCGGY	1 cut(s)	1141
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	2 cut(s)	550, 714
Csp6I	GTAC	3 cut(s)	352, 698, 806
CspAI	ACCGGT	1 cut(s)	1141
CviAII	CATG	5 cut(s)	54, 337, 454, 823, 1076
CviQI	GTAC	3 cut(s)	352, 698, 806
DdeI	CTNAG	6 cut(s)	255, 276, 646, 809, 865, 1120
DpnI	GATC	3 cut(s)	500, 611, 997
DpnII	GATC	3 cut(s)	498, 609, 995
Eam1104I	CTCTTC	1 cut(s)	866
EarI	CTCTTC	1 cut(s)	866
Eco130I	CCWWGG	2 cut(s)	964, 1230
Eco147I	AGGCCT	1 cut(s)	740
Eco24I	GRGCYC	1 cut(s)	627
Eco31I	GGTCTC	2 cut(s)	1042, 1150
EcoO109I	RGGNCCY	1 cut(s)	272
EcoT14I	CCWWGG	2 cut(s)	964, 1230
EcoT38I	GRGCYC	1 cut(s)	627
ErhI	CCWWGG	2 cut(s)	964, 1230
FaeI	CATG	5 cut(s)	57, 340, 457, 826, 1079
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	5 cut(s)	53, 336, 453, 822, 1075
Fnu4HI	GCNGC	7 cut(s)	252, 261, 264, 326, 519, 957, 1236
FriOI	GRGCYC	1 cut(s)	627
Fsp4HI	GCNGC	7 cut(s)	252, 261, 264, 326, 519, 957, 1236
GluI	GCNGC	7 cut(s)	252, 261, 264, 326, 519, 957, 1236
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	3 cut(s)	274, 670, 740
HapII	CCGG	4 cut(s)	269, 285, 1142, 1185
HgaI	GACGC	2 cut(s)	550, 714
Hin1I	GRCGYC	1 cut(s)	725
Hin1II	CATG	5 cut(s)	57, 340, 457, 826, 1079
HinfI	GANTC	5 cut(s)	60, 299, 472, 839, 1188
HpaII	CCGG	4 cut(s)	269, 285, 1142, 1185
HphI	GGTGA	3 cut(s)	107, 1056, 1140
Hpy166II	GTNNAC	3 cut(s)	74, 220, 471
Hpy188I	TCNGA	3 cut(s)	135, 396, 1166
Hpy188III	TCNNGA	5 cut(s)	296, 454, 463, 580, 829
Hpy8I	GTNNAC	3 cut(s)	74, 220, 471
HpyAV	CCTTC	8 cut(s)	39, 217, 235, 637, 739, 912, 914, 948
HpyCH4III	ACNGT	6 cut(s)	119, 421, 451, 637, 894, 1091
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	9 cut(s)	4, 325, 518, 662, 719, 770, 949, 959, 1054
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 260, 290
HpyF3I	CTNAG	6 cut(s)	255, 276, 646, 809, 865, 1120
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	725
Hsp92II	CATG	5 cut(s)	57, 340, 457, 826, 1079
KpnI	GGTACC	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	498, 609, 995
LmnI	GCTCC	3 cut(s)	271, 298, 622
Lsp1109I	GCAGC	7 cut(s)	238, 247, 250, 337, 530, 943, 1222
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	3 cut(s)	421, 538, 1069
MalI	GATC	3 cut(s)	500, 611, 997
MboI	GATC	3 cut(s)	498, 609, 995
MboII	GAAGA	8 cut(s)	168, 508, 622, 681, 853, 1120, 1123, 1183
MfeI	CAATTG	1 cut(s)	702
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	6 cut(s)	345, 522, 702, 748, 929, 1215
MlyI	GAGTC	2 cut(s)	466, 1197
MseI	TTAA	4 cut(s)	747, 855, 927, 1218
MspA1I	CMGCKG	1 cut(s)	956
MspI	CCGG	4 cut(s)	269, 285, 1142, 1185
MspR9I	CCNGG	2 cut(s)	270, 286
MunI	CAATTG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	799
MwoI	GCNNNNNNNGC	3 cut(s)	257, 260, 290
NciI	CCSGG	2 cut(s)	270, 286
NdeII	GATC	3 cut(s)	498, 609, 995
NlaIII	CATG	5 cut(s)	57, 340, 457, 826, 1079
NlaIV	GGNNCC	5 cut(s)	273, 294, 334, 353, 624
NmuCI	GTSAC	2 cut(s)	538, 1069
NspI	RCATGY	1 cut(s)	1079
PagI	TCATGA	1 cut(s)	453
PceI	AGGCCT	1 cut(s)	740
PfeI	GAWTC	3 cut(s)	60, 299, 839
PinAI	ACCGGT	1 cut(s)	1141
PkrI	GCNGC	7 cut(s)	253, 262, 265, 327, 520, 958, 1237
PleI	GAGTC	2 cut(s)	466, 1196
PpsI	GAGTC	2 cut(s)	466, 1196
PshBI	ATTAAT	1 cut(s)	855
PspN4I	GGNNCC	5 cut(s)	273, 294, 334, 353, 624
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	1056
PstNI	CAGNNNCTG	1 cut(s)	394
RsaI	GTAC	3 cut(s)	353, 699, 807
RsaNI	GTAC	3 cut(s)	352, 698, 806
SaqAI	TTAA	4 cut(s)	747, 855, 927, 1218
SatI	GCNGC	7 cut(s)	252, 261, 264, 326, 519, 957, 1236
Sau3AI	GATC	3 cut(s)	498, 609, 995
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	2 cut(s)	466, 1197
ScrFI	CCNGG	2 cut(s)	270, 286
SduI	GDGCHC	1 cut(s)	627
SfcI	CTRYAG	1 cut(s)	1052
Sse9I	AATT	6 cut(s)	345, 522, 702, 748, 929, 1215
SseBI	AGGCCT	1 cut(s)	740
SsiI	CCGC	2 cut(s)	954, 1079
SspI	AATATT	1 cut(s)	853
StuI	AGGCCT	1 cut(s)	740
StyD4I	CCNGG	2 cut(s)	268, 284
StyI	CCWWGG	2 cut(s)	964, 1230
TaaI	ACNGT	6 cut(s)	119, 421, 451, 637, 894, 1091
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	58, 95, 316
TaqII	GACCGA	1 cut(s)	508
TasI	AATT	6 cut(s)	345, 522, 702, 748, 929, 1215
TatI	WGTACW	1 cut(s)	805
TfiI	GAWTC	3 cut(s)	60, 299, 839
Tru1I	TTAA	4 cut(s)	747, 855, 927, 1218
Tru9I	TTAA	4 cut(s)	747, 855, 927, 1218
TscAI	CASTG	4 cut(s)	16, 537, 640, 873
TseFI	GTSAC	2 cut(s)	538, 1069
TseI	GCWGC	7 cut(s)	251, 260, 263, 325, 518, 956, 1235
Tsp45I	GTSAC	2 cut(s)	538, 1069
TspDTI	ATGAA	3 cut(s)	585, 877, 930
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	4 cut(s)	16, 537, 640, 873
VspI	ATTAAT	1 cut(s)	855
XapI	RAATTY	2 cut(s)	345, 929
XceI	RCATGY	1 cut(s)	1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.