Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013947

Physical Location & Seq

Genomic Coordinates Reverse (-)

79219840 .. 79222500

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG616000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCAGAGCAGTGCGATTGCTCTGTCTCCTTCCACCCCATTTCTAAAATCTCCATGTCGAATCCCGAGCTGTAAATTCTCTCAACTTTCAGCCTCGACTTGTTTTACACAACTTCACCGTATCAGTTCTATTCAGAGACTTTACTGGCAAACAGCTTTTGGCACGTTTTCTACTTCTTCTTCCTCTTTAAATGCTGAAATCCCTGCCTCCTTCCTTTCCGTAAACCGAAGTTATGATAGTTTGAAGGTCAGGGCTGCTCAGGCTGCTGCTCCGGGGCCTGAGAGTGCTGGGGAGGCTCCAGAATCAAGTGGATTGGCTCGAACTTTGCAGCTCGGTGCCATGTTTGGAATTTGGTACCTGTTGAACATTTACTTCAACATCTACAACAAACAGGTTCTGAAAGTCTATCCATTTCCAGCCACGGTTACAGCCTTTCAGTTTGCCTGTGGGACTGTCATGATTATCCTGATGTGGACTCTAAACCTCTACCCCAGACCGAAGATCACTCGCTCACAGCTTGCAGCAATTCTACCACTGGCTGTGACGCACACGATGGGAAACCTATTGACCAACATCAGTATCGGGAAAGTTGCTGTTTCATTCACTCACACGATCAAATCTATGGAGCCCTTCTTCACTGTCCTATTCTCAGCCCTCTTGCTTGCAGAGGTGGAGTTGCATTGGCGTCCTTCACAGAGGCCTCTTTTAATTGGTAACGGACGATTCACAGTTGTCTCTCATCAGAACTTAACAGCTTCGCTGGAAACACAAATTTTATACACCTTTGACAGGAATGAATCTTTGGACAATATCAATCTCTTCTCAGTGATAACCATCATTTCTTTCATACTGTTGCTTCCTTCTACTATTCTCTTGGAAGGCGTTAAATTTAGTCCTTCATACCTGCAATCCGCTGCAAACCAAGGATTGAACATCAAAGAGTTGTGTGTGAGATCACTTCTGGCTGGTTTCTGCTTCCACACTTACCAGCAGGTCTCGTATATGATACTGCAGATGGTATCACCAGTCACACATGCGGTAGGGAACTGTGTGAAGCGAGTGGTGGTCATAGTCTCCTCAGTCATCTTCTTCCAAACACCGGTCTCACCCATAAACTCCCTCGGAACTGCTATGGCTCTTGCCGGAGTCTTCTTATATTCAAGAGCCAAGAGAATTAAGCCAAAGCCCAAGGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009670 GO:0015075 GO:0015121 GO:0015291 GO:0015297 GO:0015301 GO:0015318 GO:0015355 GO:0015605 GO:0015711 GO:0015714 GO:0015717 GO:0015718 GO:0015748 GO:0015849 GO:0022804 GO:0022857 GO:0034220 GO:0035436 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071917 GO:0089721 GO:0089722 GO:0098656 GO:0099516 GO:1901264 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPT

Protein Analysis

399

Amino Acids

43.84

Weight (kDa)

9.77

Isoelectric Point (pI)

48.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPT	PF03151	109 - 224	4.3e-45	Triose-phosphate Transporter family
EamA	PF00892	128 - 223	6.5e-07	EamA-like transporter family
TPT	PF03151	264 - 387	2.6e-44	Triose-phosphate Transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01550 AT3G01550
fragaria_vesca	FvH4_6g51010 FvH4_6g51010
malus_domestica	MD09G1029600.v1.1
prunus_persica	Prupe.3G287800_v2.0.a1 Prupe.3G287800_v2.0.a1
pyrus_communis	pycom111g02360
rosa_chinensis	RchiOBHm_Chr2g0172541
rosa_laevigata	RLG00000022114
rosa_multiflora	Rmu_sc0000912.1_g000007
rosa_rugosa	Rorug02G0559700.1
rosa_samantha	Rh2AG635800 Rh2BG649200 Rh2CG616000 Rh2DG663600
rosa_wichuraiana	Rw2G052600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	912, 982
Acc65I	GGTACC	1 cut(s)	354
AccB1I	GGYRCC	2 cut(s)	335, 354
AciI	CCGC	2 cut(s)	912, 1037
AcsI	RAATTY	4 cut(s)	74, 348, 771, 887
AcyI	GRCGYC	1 cut(s)	685
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	2 cut(s)	789, 1099
AgeI	ACCGGT	1 cut(s)	1099
AgsI	TTSAA	5 cut(s)	244, 364, 376, 931, 1161
AjuI	GAANNNNNNNTTGG	2 cut(s)	785, 817
AluBI	AGCT	5 cut(s)	69, 155, 331, 517, 755
AluI	AGCT	5 cut(s)	69, 155, 331, 517, 755
Alw26I	GTCTC	6 cut(s)	30, 130, 739, 1000, 1078, 1108
AlwNI	CAGNNNCTG	1 cut(s)	397
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	2 cut(s)	275, 698
ApeKI	GCWGC	7 cut(s)	254, 263, 266, 328, 521, 914, 1193
ApoI	RAATTY	4 cut(s)	74, 348, 771, 887
AsiGI	ACCGGT	1 cut(s)	1099
Asp718I	GGTACC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	3 cut(s)	107, 1014, 1098
AvaI	CYCGRG	1 cut(s)	64
BaeI	ACNNNNGTAYC	2 cut(s)	562, 595
BanI	GGYRCC	2 cut(s)	335, 354
BanII	GRGCYC	1 cut(s)	630
BbsI	GAAGAC	1 cut(s)	1141
BbvI	GCAGC	7 cut(s)	241, 250, 253, 340, 533, 901, 1180
BccI	CCATC	3 cut(s)	547, 842, 1009
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	6 cut(s)	30, 130, 739, 1000, 1078, 1108
BfmI	CTRYAG	1 cut(s)	1010
BfuAI	ACCTGC	2 cut(s)	912, 982
BisI	GCNGC	7 cut(s)	255, 264, 267, 329, 522, 915, 1194
BlsI	GCNGC	7 cut(s)	256, 265, 268, 330, 523, 916, 1195
Bme1390I	CCNGG	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	5 cut(s)	276, 297, 337, 356, 627
BmrFI	CCNGG	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	1141
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	833
BsaHI	GRCGYC	1 cut(s)	685
BsaI	GGTCTC	2 cut(s)	1000, 1108
BsaJI	CCNNGG	5 cut(s)	272, 420, 922, 1120, 1188
BsaWI	WCCGGW	1 cut(s)	1099
Bsc4I	CCNNNNNNNGG	2 cut(s)	789, 1099
Bse118I	RCCGGY	1 cut(s)	1099
Bse1I	ACTGG	3 cut(s)	149, 540, 1025
Bse8I	GATNNNNATC	1 cut(s)	833
BseDI	CCNNGG	5 cut(s)	272, 420, 922, 1120, 1188
BseJI	GATNNNNATC	1 cut(s)	833
BseLI	CCNNNNNNNGG	2 cut(s)	789, 1099
BseMII	CTCAG	5 cut(s)	270, 272, 663, 837, 1092
BseNI	ACTGG	3 cut(s)	149, 540, 1025
BseRI	GAGGAG	1 cut(s)	1066
BseXI	GCAGC	7 cut(s)	241, 250, 253, 340, 533, 901, 1180
BseYI	CCCAGC	1 cut(s)	287
BshFI	GGCC	2 cut(s)	277, 700
BshNI	GGYRCC	2 cut(s)	335, 354
BshTI	ACCGGT	1 cut(s)	1099
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	3 cut(s)	272, 1100, 1143
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	2 cut(s)	789, 1099
BsmAI	GTCTC	6 cut(s)	30, 130, 739, 1000, 1078, 1108
BsmFI	GGGAC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	277, 700
Bso31I	GGTCTC	2 cut(s)	1000, 1108
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	630
Bsp143I	GATC	3 cut(s)	501, 612, 953
BspACI	CCGC	2 cut(s)	912, 1037
BspANI	GGCC	2 cut(s)	277, 700
BspCNI	CTCAG	5 cut(s)	271, 271, 662, 836, 1091
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	5 cut(s)	276, 297, 337, 356, 627
BspMAI	CTGCAG	1 cut(s)	1014
BspMI	ACCTGC	2 cut(s)	912, 982
BspT107I	GGYRCC	2 cut(s)	335, 354
BspTNI	GGTCTC	2 cut(s)	1000, 1108
BsrFI	RCCGGY	1 cut(s)	1099
BsrI	ACTGG	3 cut(s)	149, 540, 1025
BssAI	RCCGGY	1 cut(s)	1099
BssECI	CCNNGG	5 cut(s)	272, 420, 922, 1120, 1188
BssMI	GATC	3 cut(s)	501, 612, 953
BssNI	GRCGYC	1 cut(s)	685
BssT1I	CCWWGG	2 cut(s)	922, 1188
Bst4CI	ACNGT	7 cut(s)	119, 424, 454, 640, 730, 852, 1049
Bst6I	CTCTTC	1 cut(s)	824
BstACI	GRCGYC	1 cut(s)	685
BstC8I	GCNNGC	2 cut(s)	519, 663
BstDEI	CTNAG	5 cut(s)	258, 279, 649, 823, 1078
BstDSI	CCRYGG	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	787
BstKTI	GATC	3 cut(s)	504, 615, 956
BstMAI	GTCTC	6 cut(s)	30, 130, 739, 1000, 1078, 1108
BstMBI	GATC	3 cut(s)	501, 612, 953
BstMWI	GCNNNNNNNGC	3 cut(s)	260, 263, 293
BstNSI	RCATGY	1 cut(s)	1037
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	1010
BstV1I	GCAGC	7 cut(s)	241, 250, 253, 340, 533, 901, 1180
BstV2I	GAAGAC	1 cut(s)	1141
BsuRI	GGCC	2 cut(s)	277, 700
BtgI	CCRYGG	1 cut(s)	420
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	4 cut(s)	16, 533, 636, 831
BveI	ACCTGC	2 cut(s)	912, 982
Cac8I	GCNNGC	2 cut(s)	519, 663
CaiI	CAGNNNCTG	1 cut(s)	397
CciI	TCATGA	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	1099
Cfr13I	GGNCC	1 cut(s)	275
CseI	GACGC	2 cut(s)	553, 674
Csp6I	GTAC	1 cut(s)	355
CspAI	ACCGGT	1 cut(s)	1099
CviAII	CATG	4 cut(s)	54, 340, 457, 1034
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	5 cut(s)	258, 279, 649, 823, 1078
DpnI	GATC	3 cut(s)	503, 614, 955
DpnII	GATC	3 cut(s)	501, 612, 953
DraI	TTTAAA	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	824
EarI	CTCTTC	1 cut(s)	824
Eco130I	CCWWGG	2 cut(s)	922, 1188
Eco147I	AGGCCT	1 cut(s)	700
Eco24I	GRGCYC	1 cut(s)	630
Eco31I	GGTCTC	2 cut(s)	1000, 1108
Eco88I	CYCGRG	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	787
EcoO109I	RGGNCCY	1 cut(s)	275
EcoT14I	CCWWGG	2 cut(s)	922, 1188
EcoT38I	GRGCYC	1 cut(s)	630
ErhI	CCWWGG	2 cut(s)	922, 1188
FaeI	CATG	4 cut(s)	57, 343, 460, 1037
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	4 cut(s)	53, 339, 456, 1033
Fnu4HI	GCNGC	7 cut(s)	255, 264, 267, 329, 522, 915, 1194
FriOI	GRGCYC	1 cut(s)	630
Fsp4HI	GCNGC	7 cut(s)	255, 264, 267, 329, 522, 915, 1194
GluI	GCNGC	7 cut(s)	255, 264, 267, 329, 522, 915, 1194
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	277, 700
HapII	CCGG	3 cut(s)	272, 1100, 1143
HgaI	GACGC	2 cut(s)	553, 674
Hin1I	GRCGYC	1 cut(s)	685
Hin1II	CATG	4 cut(s)	57, 343, 460, 1037
HinfI	GANTC	6 cut(s)	60, 302, 475, 723, 797, 1146
HpaII	CCGG	3 cut(s)	272, 1100, 1143
HphI	GGTGA	3 cut(s)	107, 1014, 1098
Hpy166II	GTNNAC	2 cut(s)	223, 474
Hpy188I	TCNGA	4 cut(s)	135, 399, 744, 1124
Hpy188III	TCNNGA	6 cut(s)	64, 299, 457, 466, 583, 1161
Hpy8I	GTNNAC	2 cut(s)	223, 474
HpyAV	CCTTC	8 cut(s)	39, 220, 238, 640, 699, 870, 872, 906
HpyCH4III	ACNGT	7 cut(s)	119, 424, 454, 640, 730, 852, 1049
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	8 cut(s)	4, 328, 521, 665, 679, 907, 917, 1012
HpyF10VI	GCNNNNNNNGC	3 cut(s)	260, 263, 293
HpyF3I	CTNAG	5 cut(s)	258, 279, 649, 823, 1078
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	685
Hsp92II	CATG	4 cut(s)	57, 343, 460, 1037
KpnI	GGTACC	1 cut(s)	358
Kzo9I	GATC	3 cut(s)	501, 612, 953
LmnI	GCTCC	3 cut(s)	274, 301, 625
Lsp1109I	GCAGC	7 cut(s)	241, 250, 253, 340, 533, 901, 1180
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	4 cut(s)	424, 541, 713, 1027
MalI	GATC	3 cut(s)	503, 614, 955
MboI	GATC	3 cut(s)	501, 612, 953
MboII	GAAGA	8 cut(s)	168, 171, 511, 625, 811, 1078, 1081, 1141
MhlI	GDGCHC	1 cut(s)	630
MluCI	AATT	7 cut(s)	74, 348, 525, 708, 771, 887, 1173
MlyI	GAGTC	2 cut(s)	469, 1155
MseI	TTAA	5 cut(s)	188, 707, 749, 885, 1176
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	3 cut(s)	272, 1100, 1143
MspR9I	CCNGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	260, 263, 293
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	3 cut(s)	501, 612, 953
NlaIII	CATG	4 cut(s)	57, 343, 460, 1037
NlaIV	GGNNCC	5 cut(s)	276, 297, 337, 356, 627
NmuCI	GTSAC	2 cut(s)	541, 1027
NspI	RCATGY	1 cut(s)	1037
PagI	TCATGA	1 cut(s)	456
PceI	AGGCCT	1 cut(s)	700
PfeI	GAWTC	4 cut(s)	60, 302, 723, 797
PinAI	ACCGGT	1 cut(s)	1099
PkrI	GCNGC	7 cut(s)	256, 265, 268, 330, 523, 916, 1195
PleI	GAGTC	2 cut(s)	469, 1154
PpsI	GAGTC	2 cut(s)	469, 1154
PspFI	CCCAGC	1 cut(s)	287
PspN4I	GGNNCC	5 cut(s)	276, 297, 337, 356, 627
PspPI	GGNCC	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	1014
PstNI	CAGNNNCTG	1 cut(s)	397
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SaqAI	TTAA	5 cut(s)	188, 707, 749, 885, 1176
SatI	GCNGC	7 cut(s)	255, 264, 267, 329, 522, 915, 1194
Sau3AI	GATC	3 cut(s)	501, 612, 953
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	2 cut(s)	469, 1155
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	630
SfcI	CTRYAG	1 cut(s)	1010
Sse9I	AATT	7 cut(s)	74, 348, 525, 708, 771, 887, 1173
SseBI	AGGCCT	1 cut(s)	700
SsiI	CCGC	2 cut(s)	912, 1037
StuI	AGGCCT	1 cut(s)	700
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	2 cut(s)	922, 1188
TaaI	ACNGT	7 cut(s)	119, 424, 454, 640, 730, 852, 1049
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	3 cut(s)	58, 95, 319
TaqII	GACCGA	1 cut(s)	511
TasI	AATT	7 cut(s)	74, 348, 525, 708, 771, 887, 1173
TfiI	GAWTC	4 cut(s)	60, 302, 723, 797
Tru1I	TTAA	5 cut(s)	188, 707, 749, 885, 1176
Tru9I	TTAA	5 cut(s)	188, 707, 749, 885, 1176
TscAI	CASTG	4 cut(s)	16, 540, 643, 831
TseFI	GTSAC	2 cut(s)	541, 1027
TseI	GCWGC	7 cut(s)	254, 263, 266, 328, 521, 914, 1193
Tsp45I	GTSAC	2 cut(s)	541, 1027
TspDTI	ATGAA	4 cut(s)	588, 810, 835, 888
TspGWI	ACGGA	2 cut(s)	208, 732
TspRI	CASTG	4 cut(s)	16, 540, 643, 831
XagI	CCTNNNNNAGG	1 cut(s)	787
XapI	RAATTY	4 cut(s)	74, 348, 771, 887
XceI	RCATGY	1 cut(s)	1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.